Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexonthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAAAAAATGTAAGTATAGTTTAGTTTCGTAAGTAATTATTAAAATATATAATTATGGTAGGCATTAAAGTTTTAATACGGTTATTAATAAACATCACTTATATGTTTTGAATTGCTTAAATATTATACGTTGTGTAATTGGATTAGTGGTCAAAGTTCTAGTTCATGAACATGAAGCTATGTGTTCAAACATTGATTAATGAAAAATAACTAACAATATGCAATATATTTTGACCAAGTGGAGTCAAGTGACCCCACTTAATATACATTGGCTCCGTCACTAGAAATATTATATATTGCACATGATGCAAAATTATCAATCATGAAACTTAAATTGTATTTCATTGATGTATTTATAAGTGGTCGTAACGCTATTCCTAATTATCCTTTAAAAAAATCTCATATTCAGAAGAAAGGACAAGAGTTTGAATATAAAAGGAGATGATATGTTGGACAAGACAAGTAACATAGGATCACTTCCTTAACTCAAGATCCCACACAAAGCAATTACACAATAATAGTAGTTCGACGTTAAATTCTCTGAGTGAACACCACAATTACCGACCCAGCGGCCAGGTATCTTGTTTAATAAACTCTAATTAGTAACAATATTTATGTTATTTTTTCCAATATTATTATTTGTTCGTATTCATTTCTATGAATTGATCGAATTCTGCTGATCTGATTAGCTTCTTAATAACGTTAAAAATCGGGCCGGGATTTTCAAGCTATAGCTATTAGCTAGCTTTCGGGCCGGACTTGGGTTTTGGGTCGTTCATACCTGCACAGCTGCACTTGTTTCGAGCTGTATCAAAGAGGTCGGGTCATTTTTTTGTCAACTCTAGCTAATACACATAACATGTACGATGTCTATTAAACAAATGAATAGTTATTGAAACATAATAATGTTTGTTAATGTTAGTAGAAAATCATGGCAAAGTAAAATAAGTAAATAATGTTAAAAGTGCAACTATTTAAAAATGAAGGTAGTATTAATATGTAATGTGCGTATATTGTATGTAATTGTTCGGGGTGTGAAATCGGTGGGCCTTGAAATTCCCAGAAATCCATTTGGATTTTGGAAGTTGGAATTGCGTATCGGTAAGGTTATGTTCTATTCGACTTATTTTGACTTATTTAAGACAAAATAAATTCAGATAAGTTCATATAATATAATTTCAGAAAAAATAAGTTCTTTTCAGACAATTTTACACACAAATAAGTTTATTTCAGATAAAATAGGTTCAGATAAGTTAATACTTCATATAAGTTCAAATGAGTCCAGTTAAGTTCGGATGATATAAGTTCTGATAAGTTCAGATAATGTGAGTTAAGATAAGTTCATATTAGTTCAGCCAAAATAAGTCGGATATAACGGAGCTAGAGACAGTAACCTTGCAATATTGAGTAATTGAGTGTAGCTCGACATATTTTGCAAACAAAGAAAAAGTAGGATAAGAATCTGAAATGCTACTTCGATTCTATAGCATTGCAGCTGAATCTGATAGCATAAAAACATATACTTTCCTTAAGCTTTATGATTTAAAGAAGATTTTAATTTAGTTTTGTGGATAAAGAGCCATTAAAGACAAATAAAATACGAGCTTAGTATATTTTTTCAGTTAACATGTTTTCATTAGAGCATATTACATGTAAGAAGAAAATATGATATGGATCATCAATGGGCATAAATTACCCTTAAGTCGGGTGTACTTAATTATTTTCACGTTTCTATTGTTATGTCTATTTATCAATTGAATAAATTTTATTTTCAAGCCACCCCGATAATAACATAACACAACATGCACAACCAACAGAAAGGTATCTATCAATTGAATAAAATTTGTTTTCAAGCCACCCTTATTATTATTGCTACAACATGATGTTTTTGTTAGGCTTGTTGATACATGGAATTTATGTTCGGTTATCTATTCATTTATTTTATTTATTTTTACTAGTAGTACTTTTATTTTTCATTGAACCATCAACCTCGAAGTTGGAAAAAACAATCTTACCTTGATAAGGGTATACTTAGCTCTTTAAACTTTGGTTGATATAGTGACAACTTTTTACATTATTGATTTAATTACAGGTTTATAGCCCATATGTTTATTCAAAATTTAATGAGTTGGGTCACTTAAGTGTTACTTTTTTACTCCGTAATATTTTATAATTCAGTGTAAATGTTAATTAATTAAGTTATTGACAGACATGACAACAACAAAATGGGTTTGGTGGTGCACAGTGATAATGGTGGTGGTTATGCTACCATTGACCCATCAACAAAAGGAACAAGTTGGCAAGAAACTAGGGGCATTCACCACCGTCACATTCGAGCTCAGTAGTGGTCTTTCAGGCTACTCACAATTCTTAACAAGGTTGCGCAATGCAGTGGAAGCCCCATCCATGACTTGTGGCTTACCATCAACATTACGTACCCCGTTACGGGGCAAAGAATATGTTCACGTGGATATCAAACTTAGCAACACACAAAAGGTGAATATAGGAATAGATGTCATGGATTTATATGTGTGGGGTTATAAAGACATTTTCAATGGGAAACCTAGAGCCACTTTCTTCGGTAACACTCCTAAAGATGCCAAGGATAAACTTTTCCCAGATACGACTGTATCAAGAACTACTAAATTTCTTAGCACCTACGTGAGCCTCGAAAGGTACGCCAAAGTAGGGAGAAAGGACCTTGAATTAAAACTTAAAACCCTTGAAGATGGCATCAAAAGTGTTTACGGTAAACCAGAAAAAGAACTTGGCAACGCGGCAGAGGCTAAATTTGTTCTTATCGCCATACAAATGGTCGCGGAGGCAGCACGTTTCAAATTCATGGAGAATGGTATAGTTAACTTTGATAGCTCAAAAGCGTTCAAAAACAAAATGATAGCTTTCCAAAATGACTGGGATCCAGCCTCTCAAGCTATTCATAAAGCATCACCTAAATGCACAACTATTTCTCCGACTCTTATAATTAGTAACATCGATTATCGACAGGAGGTGAAAACAGTGGATCAAATAAAAAACGATATGGGCCTTCTCAAGTACAAAAAAAGCAACACCCCCTTATTTACATGGGCCTCCTTAAGTGAATTGCGCGCGATAATCCCAGTTTAAGTATTGCACGACTTCTGAATTACCCTTATCACTCTTAATTGTGTACGTTTGTGTATTGTGTAATGGATGTATCTTTCTACGGAGAATTTACTCTCTAATCTTGTATTTCATTGGACCATAAATAAAAAAAATAAAGGTTCATAAGAAAACAAAGGTATAATTTTGTGAATGAGAAATTCTTCATTAATGTTGGGGATTGTTGGATATTTATTTCTTATAATTAACCAATCTTCAATTATTCATAATATGAAGAAATTTTGTTTTGTCTTATCC ATGAAAAAAAATCGGCCAGACATGACAACAACAAAATGGGTTTGGTGGTGCACAGTGATAATGGTGGTGGTTATGCTACCATTGACCCATCAACAAAAGGAACAAGTTGGCAAGAAACTAGGGGCATTCACCACCGTCACATTCGAGCTCAGTAGTGGTCTTTCAGGCTACTCACAATTCTTAACAAGGTTGCGCAATGCAGTGGAAGCCCCATCCATGACTTGTGGCTTACCATCAACATTACGTACCCCGTTACGGGGCAAAGAATATGTTCACGTGGATATCAAACTTAGCAACACACAAAAGGTGAATATAGGAATAGATGTCATGGATTTATATGTGTGGGGTTATAAAGACATTTTCAATGGGAAACCTAGAGCCACTTTCTTCGGTAACACTCCTAAAGATGCCAAGGATAAACTTTTCCCAGATACGACTGTATCAAGAACTACTAAATTTCTTAGCACCTACGTGAGCCTCGAAAGGTACGCCAAAGTAGGGAGAAAGGACCTTGAATTAAAACTTAAAACCCTTGAAGATGGCATCAAAAGTGTTTACGGTAAACCAGAAAAAGAACTTGGCAACGCGGCAGAGGCTAAATTTGTTCTTATCGCCATACAAATGGTCGCGGAGGCAGCACGTTTCAAATTCATGGAGAATGGTATAGTTAACTTTGATAGCTCAAAAGCGTTCAAAAACAAAATGATAGCTTTCCAAAATGACTGGGATCCAGCCTCTCAAGCTATTCATAAAGCATCACCTAAATGCACAACTATTTCTCCGACTCTTATAATTAGTAACATCGATTATCGACAGGAGGTGAAAACAGTGGATCAAATAAAAAACGATATGGGCCTTCTCAAGTACAAAAAAAGCAACACCCCCTTATTTACATGGGCCTCCTTAAGTGAATTGCGCGCGATAATCCCAGTTTAAGTATTGCACGACTTCTGAATTACCCTTATCACTCTTAATTGTGTACGTTTGTGTATTGTGTAATGGATGTATCTTTCTACGGAGAATTTACTCTCTAATCTTGTATTTCATTGGACCATAAATAAAAAAAATAAAGGTTCATAAGAAAACAAAGGTATAATTTTGTGAATGAGAAATTCTTCATTAATGTTGGGGATTGTTGGATATTTATTTCTTATAATTAACCAATCTTCAATTATTCATAATATGAAGAAATTTTGTTTTGTCTTATCC ATGAAAAAAAATCGGCCAGACATGACAACAACAAAATGGGTTTGGTGGTGCACAGTGATAATGGTGGTGGTTATGCTACCATTGACCCATCAACAAAAGGAACAAGTTGGCAAGAAACTAGGGGCATTCACCACCGTCACATTCGAGCTCAGTAGTGGTCTTTCAGGCTACTCACAATTCTTAACAAGGTTGCGCAATGCAGTGGAAGCCCCATCCATGACTTGTGGCTTACCATCAACATTACGTACCCCGTTACGGGGCAAAGAATATGTTCACGTGGATATCAAACTTAGCAACACACAAAAGGTGAATATAGGAATAGATGTCATGGATTTATATGTGTGGGGTTATAAAGACATTTTCAATGGGAAACCTAGAGCCACTTTCTTCGGTAACACTCCTAAAGATGCCAAGGATAAACTTTTCCCAGATACGACTGTATCAAGAACTACTAAATTTCTTAGCACCTACGTGAGCCTCGAAAGGTACGCCAAAGTAGGGAGAAAGGACCTTGAATTAAAACTTAAAACCCTTGAAGATGGCATCAAAAGTGTTTACGGTAAACCAGAAAAAGAACTTGGCAACGCGGCAGAGGCTAAATTTGTTCTTATCGCCATACAAATGGTCGCGGAGGCAGCACGTTTCAAATTCATGGAGAATGGTATAGTTAACTTTGATAGCTCAAAAGCGTTCAAAAACAAAATGATAGCTTTCCAAAATGACTGGGATCCAGCCTCTCAAGCTATTCATAAAGCATCACCTAAATGCACAACTATTTCTCCGACTCTTATAATTAGTAACATCGATTATCGACAGGAGGTGAAAACAGTGGATCAAATAAAAAACGATATGGGCCTTCTCAAGTACAAAAAAAGCAACACCCCCTTATTTACATGGGCCTCCTTAAGTGAATTGCGCGCGATAATCCCAGTTTAA MKKNRPDMTTTKWVWWCTVIMVVVMLPLTHQQKEQVGKKLGAFTTVTFELSSGLSGYSQFLTRLRNAVEAPSMTCGLPSTLRTPLRGKEYVHVDIKLSNTQKVNIGIDVMDLYVWGYKDIFNGKPRATFFGNTPKDAKDKLFPDTTVSRTTKFLSTYVSLERYAKVGRKDLELKLKTLEDGIKSVYGKPEKELGNAAEAKFVLIAIQMVAEAARFKFMENGIVNFDSSKAFKNKMIAFQNDWDPASQAIHKASPKCTTISPTLIISNIDYRQEVKTVDQIKNDMGLLKYKKSNTPLFTWASLSELRAIIPV Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21765.1 vs. NCBI nr
Match: gi|902201888|gb|KNA14120.1| (hypothetical protein SOVF_110500 [Spinacia oleracea]) HSP 1 Score: 575.1 bits (1481), Expect = 7.400e-161 Identity = 290/291 (99.66%), Postives = 290/291 (99.66%), Query Frame = 1
BLAST of Spo21765.1 vs. NCBI nr
Match: gi|902201889|gb|KNA14121.1| (hypothetical protein SOVF_110510 [Spinacia oleracea]) HSP 1 Score: 425.6 bits (1093), Expect = 7.300e-116 Identity = 221/293 (75.43%), Postives = 247/293 (84.30%), Query Frame = 1
BLAST of Spo21765.1 vs. NCBI nr
Match: gi|731354502|ref|XP_010688631.1| (PREDICTED: ribosome-inactivating protein PD-L3/PD-L4-like isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 318.2 bits (814), Expect = 1.600e-83 Identity = 179/294 (60.88%), Postives = 211/294 (71.77%), Query Frame = 1
BLAST of Spo21765.1 vs. NCBI nr
Match: gi|99646716|emb|CAK22417.1| (ribosome-inactivating protein [Beta vulgaris]) HSP 1 Score: 313.5 bits (802), Expect = 4.000e-82 Identity = 177/294 (60.20%), Postives = 209/294 (71.09%), Query Frame = 1
BLAST of Spo21765.1 vs. NCBI nr
Match: gi|18149181|dbj|BAB83507.1| (ribosome-inactivating protein [Spinacia oleracea]) HSP 1 Score: 301.6 bits (771), Expect = 1.600e-78 Identity = 165/295 (55.93%), Postives = 214/295 (72.54%), Query Frame = 1
BLAST of Spo21765.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3P9_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=SOVF_110500 PE=3 SV=1) HSP 1 Score: 575.1 bits (1481), Expect = 5.200e-161 Identity = 290/291 (99.66%), Postives = 290/291 (99.66%), Query Frame = 1
BLAST of Spo21765.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R3P2_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=SOVF_110510 PE=3 SV=1) HSP 1 Score: 425.6 bits (1093), Expect = 5.100e-116 Identity = 221/293 (75.43%), Postives = 247/293 (84.30%), Query Frame = 1
BLAST of Spo21765.1 vs. UniProtKB/TrEMBL
Match: Q1H8N0_BETVU (rRNA N-glycosidase OS=Beta vulgaris GN=rip-r1 PE=2 SV=1) HSP 1 Score: 313.5 bits (802), Expect = 2.800e-82 Identity = 177/294 (60.20%), Postives = 209/294 (71.09%), Query Frame = 1
BLAST of Spo21765.1 vs. UniProtKB/TrEMBL
Match: Q8VWY2_SPIOL (rRNA N-glycosidase OS=Spinacia oleracea GN=BP31/SoRIP1 PE=2 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 1.100e-78 Identity = 165/295 (55.93%), Postives = 214/295 (72.54%), Query Frame = 1
BLAST of Spo21765.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BRN0_BETVU (rRNA N-glycosidase OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g202450 PE=3 SV=1) HSP 1 Score: 283.1 bits (723), Expect = 4.100e-73 Identity = 152/287 (52.96%), Postives = 197/287 (68.64%), Query Frame = 1
BLAST of Spo21765.1 vs. ExPASy Swiss-Prot
Match: RIPP_MIRJA (Antiviral protein MAP OS=Mirabilis jalapa PE=1 SV=2) HSP 1 Score: 120.2 bits (300), Expect = 4.100e-26 Identity = 84/237 (35.44%), Postives = 129/237 (54.43%), Query Frame = 1
BLAST of Spo21765.1 vs. ExPASy Swiss-Prot
Match: RIPA_PHYAM (Antiviral protein alpha OS=Phytolacca americana PE=1 SV=1) HSP 1 Score: 113.6 bits (283), Expect = 3.800e-24 Identity = 84/258 (32.56%), Postives = 137/258 (53.10%), Query Frame = 1
BLAST of Spo21765.1 vs. ExPASy Swiss-Prot
Match: RIPL2_PHYDI (Ribosome-inactivating protein PD-L3/PD-L4 OS=Phytolacca dioica PE=1 SV=2) HSP 1 Score: 112.1 bits (279), Expect = 1.100e-23 Identity = 82/255 (32.16%), Postives = 140/255 (54.90%), Query Frame = 1
BLAST of Spo21765.1 vs. ExPASy Swiss-Prot
Match: RIP2_PHYDI (Protein synthesis inhibitor PD-S2 OS=Phytolacca dioica PE=1 SV=2) HSP 1 Score: 109.4 bits (272), Expect = 7.200e-23 Identity = 89/260 (34.23%), Postives = 138/260 (53.08%), Query Frame = 1
BLAST of Spo21765.1 vs. ExPASy Swiss-Prot
Match: RIPL1_PHYDI (Ribosome-inactivating protein PD-L1/PD-L2 OS=Phytolacca dioica PE=1 SV=2) HSP 1 Score: 105.9 bits (263), Expect = 8.000e-22 Identity = 82/256 (32.03%), Postives = 138/256 (53.91%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21765.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo21765.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo21765.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo21765.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 0
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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