Spo21790 (gene) | SpinachBase

Overview


Name	Spo21790
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr2 : 57134877 .. 57137478 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAATTGAGTTGGTTTACAGTGCAGCATATGATCTGCACAAAAAGAAAAAGGAAAAAAAATGAAGTGTAGAATTTAAGGGTATATGTGTGTCATTTTTCGGTTTTATTTTTTTATTTTTTAACTTCTCTTTCAGAAATTGTTCTTTGTAAGGAAACCTTGAATACAGTCAAAAGGCTATGACACTGGTTTTTGTGTTGTCGTCTTCAGCCTGACGGATTAATAGAAGTGAGTTGAATGTTTCAGCTGACTATATTTTCTATGGGAAAAGCGTAACTAGGTTTTTTTTTCGTTTTTCGCTGTATATACTACGAGTACATTAGAAGACGCAAAAACAAAGTAGAAGTTTGCTGAAACACCTGAAGATTGTATGAAAGTATTAACAAAAGAAGGCGATGCATGTTTTAGCAGCTATATTAGCCACTATTTTCCTCCCACATTTTTTTTTTGTTTTTTTGTTGTGACATTCAGAAAATGAACAAAAAAAAGAAAATATTGGAAAAATAATTAATCCGTCTACCTACAAAACGTAGTCATTGAAAAGTGGCAAACTCGTCTTCAATAGTACAAAAATTATACGGAGTATACACAATACAAAACCGATTAGTACAATATTTTTGAACATGCAGGTACCATAAAATCAACACAACAAGATGGAAAAATCATATACCTTGAATACTTGAATTCAACTATGAAAAAGAAGTTCTATAGTTAATGTATCGCGTAACAATATTACACTTGCCCCTGACCTAGCTATAGCAGCTAGAAAACATGGGATGGTGGCGTAAGTGTTGGGTTTGTTTATTCTTCTTGTCAAAAAAAAAAAAAAAAACTAAGAAAAATAAGTGCAATTTGGTTTCGGTTTCATATTATAACATGTAAGAATTTTCAATTGAAAACTTTATATTAATTTTATAATTTTATAGTCTTTACTTTTAGTAACTCTTTTGCTCAATTTTTTTTTTTTTGATCTATTCAAAGAATTGGCTATTTTTCATGAACTATTATATAATAGTAAATCCGGATCGTACATAAATTTATTTTGAAATCGAATAATGGCCATGATTGACTTTACAAATCAAGGATATATCATATATATATGTATACTGAATATTTATTTACACTGCTAAAAATAAAAGAATAATTACACAGCTAAAACACAAAAGGACTATTATGGTTGCTTCTTTATACAAAGGAGAGGATGGATAGACAATTCGTGGACTATGGACCGTGGTGCACATAGAGCTACGTGCACCAAAAGAACATGTGTGCATAAGTAAAAGAACACGACACTACGGCAAAAAAACATGCGATATAATATTTCACTTTTTTTATTATAAAAATAATTTATTATTTTACTATTTATTAAAACCTAAATAAAAAAAATACTCATGTTCTTTTCTCGTAACCATATGTTCTTTCAATTATATACTGTGTTCTTTTGGTGCACGTAGCTCTATGTGCACCATGGTCCACCTTCTAAATTGCGTTGGAATATTGGCCAACGACTAGTTTTTTTTTTTAAAAAAAAATTAGATGTTGATTAACAGTTTTTTAAATGATCAACAAAATACCTTGTAAAAAATGGGGTATTTGGCTTTGAAACGCGTGCACATAAACACCATGACCCTCCTTATTAATTCCTGGTTCTTGATTACCAAACTTGTTAATGTGTGGCAAACATAGAAATATATGTGTGGGAAGCAATGTTGTTGCTTCATTATACAAAGGAGAGGATGGTTGGAATATGGGCCAACGACTAGTTTTTTTTAAAAAAATTAAATGTTGTTTAACAGTGGTATATGGTGAAAATTTTAGATAATAGAGGGGCATATGGTGAAAAAATTACGCTCACTTAACAATATAGTCACGTCATGCAAGAAAATAAAACCTCAAAAATACACAATGAATCTAAAACTACAAGGGTATTTTTGGTAAATAAAGTTAAACCTCGCGCTATTTCATGAAAAACCGATAATTAAACCCCAACTCTCTCCAAAACCCCCAATTAGCTCCTGCCTCCTCCTCCCACCTCCGGAGTTTTAATTTCCCGCCTCTTAAAATCCTCCAACAAAGTGACCATATTGTATTTGCATCACCACCACTAGTCGGCGGCGCCTCTTCCAGTGGAGGAATTCCGATCACCTCTCTTTATCTGCCGCTGCTAGTTCGACAGTGTATAGCTTCTTTTCCTCATGCATTTTCTTTATTTTTCTATTTTGTATCCATTTTTTAGGATTTTTTTGTTGATTTTGTTTGTAATTATAGAGCCAAAAGGTGTTTCAATACATTCTATTGCCTGATATGATGTTTCAAATATTGAAATCTTGTTGTTGAATATAATTCTATTGAATTTTTCGGTGGCTTTGTTTTGATGTTGTTTTTATGTCTATGTATTCTATACACAGTTCATAACTTCTGTAACCGACTCGCCGGAGTGAACCACCAGGCAAGTAGGCGACCACCGTCGGTCACTAACCTCCACATTCGTGTACAAACTACCAACCACGACAAGCAGACGAGTAGATTGAAGGCTCGCCGTCGTCGCCGATTGAAGGAGAACGCTGCTCCGGTAGAACGGAGAACGACTCAACATCTCTAA

mRNA sequence

ATGAAATTGAGTTGGTTTACAGTGCAGCATATGATCTGCACAAAAAGAAAAAGGAAAAAAAATGAAGTTGACCATATTGTATTTGCATCACCACCACTAGTCGGCGGCGCCTCTTCCAGTGGAGGAATTCCGATCACCTCTCTTTATCTGCCGCTGCTAGTTCGACAGTTTCATAACTTCTGTAACCGACTCGCCGGAGTGAACCACCAGGCAAGTAGGCGACCACCGTCGGTCACTAACCTCCACATTCGTGTACAAACTACCAACCACGACAAGCAGACGAGTAGATTGAAGGCTCGCCGTCGTCGCCGATTGAAGGAGAACGCTGCTCCGGTAGAACGGAGAACGACTCAACATCTCTAA

Coding sequence (CDS)

ATGAAATTGAGTTGGTTTACAGTGCAGCATATGATCTGCACAAAAAGAAAAAGGAAAAAAAATGAAGTTGACCATATTGTATTTGCATCACCACCACTAGTCGGCGGCGCCTCTTCCAGTGGAGGAATTCCGATCACCTCTCTTTATCTGCCGCTGCTAGTTCGACAGTTTCATAACTTCTGTAACCGACTCGCCGGAGTGAACCACCAGGCAAGTAGGCGACCACCGTCGGTCACTAACCTCCACATTCGTGTACAAACTACCAACCACGACAAGCAGACGAGTAGATTGAAGGCTCGCCGTCGTCGCCGATTGAAGGAGAACGCTGCTCCGGTAGAACGGAGAACGACTCAACATCTCTAA

Protein sequence

MKLSWFTVQHMICTKRKRKKNEVDHIVFASPPLVGGASSSGGIPITSLYLPLLVRQFHNFCNRLAGVNHQASRRPPSVTNLHIRVQTTNHDKQTSRLKARRRRRLKENAAPVERRTTQHL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21790.1	Spo21790.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo21790.1 vs. NCBI nr
BLAST of Spo21790.1 vs. UniProtKB/TrEMBL
BLAST of Spo21790.1 vs. ExPASy Swiss-Prot
BLAST of Spo21790.1 vs. TAIR (Arabidopsis)

BLAST of Spo21790.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21790.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21790.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21790.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0050896	response to stimulus
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0003677	DNA binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15703	0.70	Barchart \| Table
Spo21617	0.68	Barchart \| Table
Spo12890	0.67	Barchart \| Table
Spo01593	0.65	Barchart \| Table