Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGATGTTGGAGGAGCCCACAAAGTTTGAAAGAAAAGACATAGACATCGTCGACACTCTTGACACTGTTCCACGTCTCCTCTGTCTCTCTCTCGTCTCTCCTCCCTCTTTCTCTCTCCTCTAACACTTGTAATTTCAAAACCCAATTTCTTCATATTTCACCACTTTTCATAGATCGTTCTCCAAATTCAGGTGTGAATTTCACTTTGTTTTTTCTTTTTCTGGGTAATCTCTAAGAAAATGAATTCAGGGGAATTTCTCAGCATTCAACCCCAAGAACTTCAATTCCCATGTATGTTCTCGTACTTCCTGCCTTAATTTCTTCAAGTTTCTGTTTTTTTTCAATTCAATTTTTAATTTTGTGTTCTTGAGTTTTGATTACATGCAGTTGAGTTGAACAAGCAGATCTCTTGTACCATGCAATTGACCAATCTTACTGACAGCTATGTTGCTTTTAAGGTACCCCAAATCAATTTTCAATTTTCAATTTTCAATTTTTGTTTTTTGGGTGAAATTTTGACTGGGTTTTATTTTCCCCCAAATTTGCAGGTGAAAACAACGAATCCTAAGAAGTATTCTGTACGGCCAAATACTGGGATTGTCTTGCCACATTCCAACCATGATCTCTTAGGTTCTTTTTCTTTCTATCTTGATTTTCAATGTTGTTAATTTCAGCTTAATTCTTCTGGGTTTGAGTCAAATTTTGTGATAATCAACAGGAATGATGAAATTTTGTCAATTAGAACCCTGGGCTCGGTCTGGAAATAATAGTCATATTATAAATACTAATTTAAGATGTTCAGAAAAAGTTGTCACATTTAAGTAATTTTGTACAGGAGTAATGTTTATGATTGGTTTTGCAAACTACTCTAAATAATTATTTCTCAAATATTGACTTAAGTTTTGTTGGGTTGGGGAATTAATTGTAGTGACAATGCAAGCACAAAAAGAAGCACCTGCTGACATGCAATGCAGAGACAAATTTCTTCTTCAGAGTGTGATTGCCAGCCCTGAAACTACCATTAAGGATATCACTTCTGATATGGTAATCCCTTTAACTATTGCCTTATCTCACTTTTTATAGCACAT TGATGTTGGAGGAGCCCACAAAGTTTGAAAGAAAAGACATAGACATCGTCGACACTCTTGACACTGTTCCACGTCTCCTCTGTCTCTCTCTCGTCTCTCCTCCCTCTTTCTCTCTCCTCTAACACTTGTAATTTCAAAACCCAATTTCTTCATATTTCACCACTTTTCATAGATCGTTCTCCAAATTCAGGTGTGAATTTCACTTTGTTTTTTCTTTTTCTGGGTAATCTCTAAGAAAATGAATTCAGGGGAATTTCTCAGCATTCAACCCCAAGAACTTCAATTCCCATTTGAGTTGAACAAGCAGATCTCTTGTACCATGCAATTGACCAATCTTACTGACAGCTATGTTGCTTTTAAGGTGAAAACAACGAATCCTAAGAAGTATTCTGTACGGCCAAATACTGGGATTGTCTTGCCACATTCCAACCATGATCTCTTAGTGACAATGCAAGCACAAAAAGAAGCACCTGCTGACATGCAATGCAGAGACAAATTTCTTCTTCAGAGTGTGATTGCCAGCCCTGAAACTACCATTAAGGATATCACTTCTGATATGGTAATCCCTTTAACTATTGCCTTATCTCACTTTTTATAGCACAT ATGAATTCAGGGGAATTTCTCAGCATTCAACCCCAAGAACTTCAATTCCCATTTGAGTTGAACAAGCAGATCTCTTGTACCATGCAATTGACCAATCTTACTGACAGCTATGTTGCTTTTAAGGTGAAAACAACGAATCCTAAGAAGTATTCTGTACGGCCAAATACTGGGATTGTCTTGCCACATTCCAACCATGATCTCTTAGTGACAATGCAAGCACAAAAAGAAGCACCTGCTGACATGCAATGCAGAGACAAATTTCTTCTTCAGAGTGTGATTGCCAGCCCTGAAACTACCATTAAGGATATCACTTCTGATATGGTAATCCCTTTAACTATTGCCTTATCTCACTTTTTATAG MNSGEFLSIQPQELQFPFELNKQISCTMQLTNLTDSYVAFKVKTTNPKKYSVRPNTGIVLPHSNHDLLVTMQAQKEAPADMQCRDKFLLQSVIASPETTIKDITSDMVIPLTIALSHFL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo21852.1 vs. NCBI nr
Match: gi|902230066|gb|KNA21696.1| (hypothetical protein SOVF_040250 [Spinacia oleracea]) HSP 1 Score: 215.3 bits (547), Expect = 5.700e-53 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
BLAST of Spo21852.1 vs. NCBI nr
Match: gi|731361098|ref|XP_010692173.1| (PREDICTED: vesicle-associated protein 1-2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 198.7 bits (504), Expect = 5.600e-48 Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 1
BLAST of Spo21852.1 vs. NCBI nr
Match: gi|1012330636|gb|KYP42149.1| (Vesicle-associated membrane protein/synaptobrevin-binding protein [Cajanus cajan]) HSP 1 Score: 171.8 bits (434), Expect = 7.300e-40 Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 1
BLAST of Spo21852.1 vs. NCBI nr
Match: gi|658035800|ref|XP_008353433.1| (PREDICTED: vesicle-associated protein 1-2-like [Malus domestica]) HSP 1 Score: 171.8 bits (434), Expect = 7.300e-40 Identity = 82/107 (76.64%), Postives = 96/107 (89.72%), Query Frame = 1
BLAST of Spo21852.1 vs. NCBI nr
Match: gi|658012741|ref|XP_008341648.1| (PREDICTED: vesicle-associated protein 1-2 [Malus domestica]) HSP 1 Score: 171.8 bits (434), Expect = 7.300e-40 Identity = 82/107 (76.64%), Postives = 96/107 (89.72%), Query Frame = 1
BLAST of Spo21852.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQ92_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_040250 PE=4 SV=1) HSP 1 Score: 215.3 bits (547), Expect = 4.000e-53 Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 1
BLAST of Spo21852.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BGD9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g018610 PE=4 SV=1) HSP 1 Score: 198.7 bits (504), Expect = 3.900e-48 Identity = 97/107 (90.65%), Postives = 102/107 (95.33%), Query Frame = 1
BLAST of Spo21852.1 vs. UniProtKB/TrEMBL
Match: A0A151RHW4_CAJCA (Vesicle-associated membrane protein/synaptobrevin-binding protein OS=Cajanus cajan GN=KK1_036463 PE=4 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 5.100e-40 Identity = 82/107 (76.64%), Postives = 95/107 (88.79%), Query Frame = 1
BLAST of Spo21852.1 vs. UniProtKB/TrEMBL
Match: A0A0B2R252_GLYSO (Vesicle-associated protein 1-2 OS=Glycine soja GN=glysoja_046566 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 8.600e-40 Identity = 82/107 (76.64%), Postives = 94/107 (87.85%), Query Frame = 1
BLAST of Spo21852.1 vs. UniProtKB/TrEMBL
Match: I1JKU6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G032100 PE=4 SV=1) HSP 1 Score: 171.0 bits (432), Expect = 8.600e-40 Identity = 82/107 (76.64%), Postives = 94/107 (87.85%), Query Frame = 1
BLAST of Spo21852.1 vs. ExPASy Swiss-Prot
Match: VAP11_ARATH (Vesicle-associated protein 1-1 OS=Arabidopsis thaliana GN=PVA11 PE=1 SV=1) HSP 1 Score: 156.4 bits (394), Expect = 2.000e-37 Identity = 74/107 (69.16%), Postives = 91/107 (85.05%), Query Frame = 1
BLAST of Spo21852.1 vs. ExPASy Swiss-Prot
Match: VAP12_ARATH (Vesicle-associated protein 1-2 OS=Arabidopsis thaliana GN=PVA12 PE=1 SV=1) HSP 1 Score: 154.1 bits (388), Expect = 9.800e-37 Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 1
BLAST of Spo21852.1 vs. ExPASy Swiss-Prot
Match: VAP14_ARATH (Vesicle-associated protein 1-4 OS=Arabidopsis thaliana GN=PVA14 PE=2 SV=1) HSP 1 Score: 141.4 bits (355), Expect = 6.600e-33 Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1
BLAST of Spo21852.1 vs. ExPASy Swiss-Prot
Match: VAP13_ARATH (Vesicle-associated protein 1-3 OS=Arabidopsis thaliana GN=PVA13 PE=2 SV=1) HSP 1 Score: 137.9 bits (346), Expect = 7.300e-32 Identity = 67/108 (62.04%), Postives = 87/108 (80.56%), Query Frame = 1
BLAST of Spo21852.1 vs. ExPASy Swiss-Prot
Match: VAP31_ARATH (Vesicle-associated protein 3-1 OS=Arabidopsis thaliana GN=PVA31 PE=3 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 3.100e-30 Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1
BLAST of Spo21852.1 vs. TAIR (Arabidopsis)
Match: AT3G60600.1 (vesicle associated protein) HSP 1 Score: 156.4 bits (394), Expect = 1.100e-38 Identity = 74/107 (69.16%), Postives = 91/107 (85.05%), Query Frame = 1
BLAST of Spo21852.1 vs. TAIR (Arabidopsis)
Match: AT2G45140.1 (plant VAP homolog 12) HSP 1 Score: 154.1 bits (388), Expect = 5.500e-38 Identity = 74/105 (70.48%), Postives = 88/105 (83.81%), Query Frame = 1
BLAST of Spo21852.1 vs. TAIR (Arabidopsis)
Match: AT1G51270.3 (structural molecules;transmembrane receptors;structural molecules) HSP 1 Score: 141.4 bits (355), Expect = 3.700e-34 Identity = 67/105 (63.81%), Postives = 82/105 (78.10%), Query Frame = 1
BLAST of Spo21852.1 vs. TAIR (Arabidopsis)
Match: AT4G00170.1 (Plant VAMP (vesicle-associated membrane protein) family protein) HSP 1 Score: 137.9 bits (346), Expect = 4.100e-33 Identity = 67/108 (62.04%), Postives = 87/108 (80.56%), Query Frame = 1
BLAST of Spo21852.1 vs. TAIR (Arabidopsis)
Match: AT2G23830.1 (PapD-like superfamily protein) HSP 1 Score: 132.5 bits (332), Expect = 1.700e-31 Identity = 64/107 (59.81%), Postives = 82/107 (76.64%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo21852.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21852.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21852.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo21852.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
|