Spo21909 (gene) | SpinachBase

Overview


Name	Spo21909
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Replication protein A 70 kDa DNA-binding subunit
Location	chr5 : 35361259 .. 35372571 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTCCCCAAATTGCCCTTTTTTCTTTCAATAATTACATCCTACCTCTTTATATTTAGTATACTCTAGAAACTCAGTAAGATTGTGCTCCGTTCTCTCCGCATAACCCCTTCAACTTCTCTACAAACTCAAGCTCCATCAAAATCGCAGCCATCAAGACAAACTCAAGCCCCATAAAAAAACGCAGCCATCAAGAAAACTCAAGAAAGGTAATTGTACTTTTGTTAATGAAATTTGATGTCTTCCATATTTTGTTCAATCATTCATTCATTTGTTTTGGATTCGTAAACAGAGGTAAGTGTTTCCACCTTAATTTCATTCAGATCTTAACATGCATGTGTTTATTCATTTGAAATTGGTCTAAATTTTGAGTTTTAATTAATGAGATTGATACGAAACTGAAAAGAGTATAACTTTAAGTGTTAATAATTTAATTCCTTTGTTTTTTGTTGGTCTTAATTTGATATGTATGTGCATGTTAAGAATACGATTTAGATTGTTTCTTTTTTGCAATCTGTAGAATTTTTAATATGATTTGGAACCGGGTGTGAAATATTGTCAAGTTTGCAGTGGGTGAGGAATTGGGTTTGTTTGAGGTGGAAAGGGAAGGAAGTCCGTTTCTTGTTGGAATTTCTGGGGTTTAGGAATTTTGATTTTGATTGTCATTGGTGATGACCAAGTTGCAGCAATCCAACTCCTGCAATGTAGAAAAGCTCATTCTTGTCTGAATTATACTTGTGTTTTTTTGTCTGTGATTTTTTGAGAATTAATGAAGTCTAGACCCTTTATTTTTTTTCTCTAGAAAATAAGTTGGATTATTGTTTGTGCAATTCCCAGCACTGTGGACTGGCCAGTGGAGACTAAAAGTTTGTGATGTAAGATACTAAGATGTAAGGAATGGAGAGCTAAGGGAAAAAAGAGAGTGATTAACAGGCAAAAAACAGGCTTGTTGTTGGATAAAAAAGCTATAGGAAGCTAGGAACCATCCCATCTCTTAATCTTCATCACGCTAAATAAGTAAAGGTTCACTGTATGCCTACGTGACTTTTATTATTTCTTGATGAATTATATAGGGGGTCGGAAGCCTAGCACCTAGGTACTCAGGTTGGGAATTAATTGTAAAACAGGAACATATTACAAATGGAAAAAACATTCAATGCACTTAACAGAAATCAGAAATATAAGTAAAGGAATGGAGGACATAGTACTAAAAGAAGGCTTCTCATATTGCTAGGAAATTGTGAATTACAGTGAAAAACCCTTGATTCATTGAATGATGTTGGATACTTTTCATTGCATATTTTTATGTGATGATTCAATTCAATTGTATTGAAAGTGATGGTTTATTCTTTGATTTGTAGATCATTTTACTGAGTGTTATAGTGTCCGTTTGTGTGTTATAGGAGAAATTAGGGTGTCTATGATTTTCTTTGTATAATAACACTTTAAGAGTTATTTCCTACGAACAAGGTTGGACCTTTTTTATAAAAATAAAATAAAATCTCTGATGGTCTGTTTATTGACCTTCTTTCTATTGATTGACCTAAAATGCTTATGTTGATTGACCGAAGTAGAAACCTAAACTGCATAAACTACAATGACACCATCAATCAATCAACGGTGATAGATTTCTTAACCTTCCTAAGCCATTTGTGAAAGACCATTCAAAAGAAAAGACAATTGGTTCACCATAAAACTCACCCTAATCCTCCCATTTAAAAAACAACCAAATTATCTGGAGTTATATTTTTTGATCCAAAATCCAAAATTATATATGTTGTTTTGTCCACATTATTCGAATTTCCTAAAATTATTTTTTTATTTCTCCCTAAAAAAATGATGTTTACTAACAGATTTTCTATTATAAGTGCATGTATGTAGGTCACAAAATACACGGAAGAGGTGAAAACGACAAGCTTTTAAGATCGAGGCTTGTGGGCTCATATTTGTATAAAGATCTTATCATTGGTGTTACAAGTCCTGAAAATAACTGGTATCAAGTTGTTTCACATTCTTGGAGTTTTAATTTAATTTCCAGCTTGTTTAATAAATCAAAGTTTTGTGTTAAGTAGTTTATTTCAGTTTTACTCATTATTTTTATTGTTGGTTATATAATACTTTGCTTTATTTATTTGAGATTTAATGGTTTTCCAAGGTTATCTATACCTAGTATTTAAAAAATGAAACCATAGGTTAGAATGTGATATGTAATCATATGTTATAATGTGACATGTGTCTTCACATCACAATCTTCTATTAAAAAAAAGAGACAAAAATCAAATACATCATCATTAATGTACATGTCCTCGTGTTTAAAGAGGGAAAACTCAAAAGACTTCCCCTCAAAAAAAAAAAAAACCTGAAAAAACTAAAAGACATTCATACAAATAAATAATCATAATTTAATGAGCTAAGTTAAATTGTTATTAATATTTCATAACAATAACATTAATAAACATTAGTTCTTACTAAATAGAAGGCATAAGAAGCTAAACATCTTGCCAGGATGAGCCATCAACTTCTCATCTTCAATGCACTCCTTAAAAATAAATTGACTATCCACGTACCATTTTCGTTACATCACTTGTACAATTAACTATATATAATCACACATTTTCAGAGGTAATGTGTGTTTACTTTATGTGTCTATTCTTTTTTTTTATATGGCTAAATATCAATTTTCGTCAATTTATTATGATTATTTTAATAACCGTTTGTTTTTATAGACATTATATTATATGCTACATTTTCATCACCTTTGATTGTTCTCACTAAATTTTGTTAGATTAACTTAGTAATAACCTTAACACATACAAAATGTGATTTTATTTATTTATAACTTACATTAAACAAAAAATTACGAATACACATAAATAATCTAAAATTTCATAATATCTAAGTTATTGTATGTCGAGTAACGTAACTATGTAAATTCTTATAAAACTTTACAAAATGCTCCCGTGCATTGCACGAGTCAAAATGCTAGTTAAGCTTGAATAAGGAGTCAATCTAGAAGTCTCATCTTAAAGTGTTCTTTATTAATAAATAAATATTGTGAGTTTTGAGAAGTGGAACAACAAAACATCAAACTGTGCCATTATTTTAAATATATACGTGATAATAAATTTTTTGATTTCTACTTACTACTTGTTCTTATTATGTAGTAGACATACACACATAGAACTTCACCTCCGAACTATCTCTTCCCATCCAACAAAGGAATTAGGTATGGCGACTCCTTTAGAGAAAAGATTAAAATTAAATGAATATAAGAGAAAATGGTATGCCGATTTATCTGAGGAAAGAAAAGTGGAAATTAGAAAAAGACGACGAGAAGCTTATCATAACAAGAAAAAATTGAAAAACCAAATTATTATAAATGATGAGAACGAAAATGACGCTCAAATAATCAGTGCTAAAAAAAGCGTCTATAATATAGACCAACCTAAAACATTAAGACGTGAAGATATAGTTGAAATTGAAAAAACTAAAGGAAAGACTCAAGTGACATTTTTCGGCATCTTTGAGGCAGGTTAGTTTAATTAATATTCTACTATAAGTCCTTTTACTTATAATATTTCACAGGGAAGAAATTTTAAAATTCTATATTTGGCAGGTTCAACTTCAAACACCTCACCACATAAAGCCAGTAATATACTTAATCAAAACAAAAGGAAAAAAACATGCACATGCTTGAAAAAGTCTAAGACAAAACAAGGCGATACATACACAGATGAATATTCCATTCCAACTGAGGCATATGTTATGCCTCAGCCAAAACAATGTAATCATTGTGGTGCAACGAAATTCCATCGTGAACCAAAAGGGTTTTGTTGTTCTGATGGTAAGATTGCATTGGCTAGGAATGACCCTCCATATGATCTCTATCAATTGTACACATCAAAAACAAGTGAATCTATGTTGTTTTTAAAATATATTCGCACCTTCAATAACTCATTTGCTTTTACGTCTTTCGGTGTTCGATATGATAAAGATTTATGCAAAAGAAATAAGGGCATATATACTTTTAAAGTACAGGGCCAAGTTTATCATTATATAAACGAACTATTTCCAGAAGATGAAAATCCAAAGTATTTACAACTTTATTTTTATGATCCTGAACATGAAGTCGAGAATCGAATAAACAACTCAAAACACTTAACTCCAGAAATAACAAGCTTGCTTATAGATATCTTGAAGGTGAATCCATATGGAAATTTTTTTAGAAGACTGCAAAATGTTCCAGATTTAGAAAATCACCACATTATTATAAAAACACATAATGATTTAGATCAACGTGTTTACAATCTACCCACAATGTCGCAAGTGGCTGGAATATGGATCGAAAGTAATGATCCAGAAGAGGAAAGGGAGAGAAATATTGTTGTTTATAGTCATGCAGGCCATAGTTGTAAGGTCCAATATTATTATGGTTGCTATGACCCTTTACAATATCCTTTACTATTTCCTTACGGAGAAATGGGATGGCGTCAAGGAATTAAAAAGATTGAAAAAGATAAAATGCAAACACAATCCAACGTCGATGATTTTATTAATGTAGACCAATGTGCCACACCATCTGAACTTCTACAAAAAGAAGAGACATGTAAGTCATTTTAAACAACACAAGTCTTTCTTTCTGTGTGTGTATATATATATATATATATATATATATATATATANACAACACAAGTCTTTCTTTCTGTGTGTGTGTATATATATATATATATATATATATATATATATATCCTTATAAATATATATCCTTTTTCTACCTTATAATTAATTCATAACTATTAATTAAACATTTCAGTATCCAAGAAAGGACGTGGAAAACGAAATATGGTGTCCTGTAGAGAGTATTATTGCTATAAATTACAAATAAGAAACCGTTTAATATCTATTTTGCTGCATGCTGGGCGCCTACTCCAACAATATGTTGTTGACATGTACATTAAACTTGAATCATCAAGATTAGATTTTTTCCGAAATAACCAGAATGAAATCCGAGCTGAAATTTATCAAGGAATTGTTGATAGTGTTGCAATGGGAGAAAAAAAAGCGTCTAACATAGGAAAACGAATAGTTCTACCTTCTTCCTCCATCGGAGGGTCAAGAGACATGAGAAAACGTTACATAGATTCAATGACTTTAATCCAACTATTTGGGAAACCAGATATATTCCTAACAATGACATGCAATCCAAATTGGCAAGAAATCAAACAAGAACTACGTTTTAATGATGAAGTACAAAATAGGCCAGACTTGGTTGCACGGATTTTTAAAGCAAAATTAGAAGAACTAAAGCATTTGTTGTTTAAAAATCAATTTTTTGGCCCTGTTGCAGCCTATACATATGTAATTGAATTCCAAAAAAGAGGCCTGCCACATGCTCATTTTCTTATCATTTTAAAACCAGGCCACAAAATGACTTCTGCTGAATTTTATGACAAATTTGTTTGTGCTGAACTTCCTGATCAAAATGAAAATCCTCACTTATATGCTGCCGTGGTGAAACACATGATGCATGGCCCTTGTGGAAGATTGAATCCATCTAATGCTTGTATGAATAAAGATGGAAAGTGTAAAAATAATTACCCAAAATCCTTTTGCTCTTCTACTGTTCATGGTAAAAAAATCATATGCAGTATATAGAAGAAGAGATGATGGAAAACAAGTTAAAGTAAGAGGTCAAGTCCTAGATAATAGGTGGGTTGTACCATATAATCCATATTTGCTTGTAAAGTTTGATTGTCACATTAATGTTAAAATTTGTTCAACTGTTGAGGCAGTTAAGTATTTATACAAGTACATATATAAAGGCCATGATCGTGTCGCTTTTCATGTATATTCTAATGAAACTAAAAATGAAATAGACGATATTGAGCAATATCAATCTGGTAGATGGGTTCCCCCCCNCCCCCCCCGGAAGCAATGTGGAGAATTTATAAATTCGCTTTGCATGAGATATATCCATCCGTACAAAGTTTACAATTGCACTTGGAAGGAAAACAACTTGTGACATTTCGAAATACTGACAATTTAAACATCATAGTAGAAAATGATTCATCCAAAGAAACGATGTTCACTCAATATTTTTACGTGAACAAAATGAAAAGAAATCCTAAAAACTTACTTTACAAAGAATTCCCAGAAGAGTTTGTTTGGAACTCACAATCTAAAACTTGGAACAAAAGAAGTAAAAAAAGACTAAAAAGGTTATTGGTCGTGTAGTTACAGCCAATCCCAATGAAAGGGAAAGATATTATTTACGTATACTACTAAATCATTTTGGAACATCTACATCCTTTGATGATCTCAAGACTTTAAATAATGAAAAGGCTAATACGTTTCGTGAGGCCGCATTAATGCATGGATTGCTCGATTCTGATAATAGCTTAGATTTATGTTTACAAGAAGCCACAATGTATAGAATGTCTTGTAGTTTAAGAAGACTATTTGCAACTATACTTGTTCATTGCAGTCCAAAGAATCCAAAAGAGCTATGGGAAAAATATGAAAACGCAATGAGCGAGGATTACCAACATACAAAAGCCTTTACAAAAGATCAAATAAGACACAAAGTGCTCCAAAATATAAGTTATATATTAGAATCTATGGGGAAAGAATTATCAAACTATAAATTTATAGATCATGACATCAACATTTATAACGAAGAAGAATTGTGTAAAGAAATAGAAGATGCACTACATATAAATGTACCAGAAGAGGAACTCTTAACGATAACTAAACTTAATAAAGAACAAAAACAAGCATTTGATATCATAACTAAACATATATTTTTAAACACACTGGGTGCTTTTTTCATAGATGCCCCCAGTGGAACTGGGAAAACATATTTGTATGTAGCAATTCTTGCTGCTGTGAGATCAAAAGGTTTAATAGCCCTGCCTACCGCAACTTCTGGAGTGGCGGCATCTAATCTTCCGTTTGCTAGAACAGCACACTCTAGATTCAAAATACCAATCAATATAGATGAAAACAGTTCTTGCAACATAAGCAAACAAAAAGGACTTGGAAAATTATTACGTGCTGCAAAAGTCATCATATGGGATGAGGCTACAATGGCAACAAATAAAACAATAGAAACTCTAGATCAAGTATTACAAGACATAAATTATTCCCCTCATCCTTTTGGAGGGAAAGTCGTAATATTTGGTGGCGACTTCCGTCAAGTACTTCCAGTAATACCTAAAGCATCAAAAGAAGAACTAATAGAAGCAAGCTTAGTTAGATCTAAAATATGGCACACCCTACAAAAAATAAGCCTAACAGAAAATATGAGAGCTATATTAGACCCCTCTTTCAGTGAGTATTTATTAAAGATTGGTAATGGTGAAGAAAAACCTATCTATGATGACATAATAAAATTTCCTTCTTCTATGGTAGTTCCCTATAAATATGAAATAACCTCTTTAAATCACTTGATTGAACATGTATTTCCAAATTTAGAAAAGCTTGCCTCTTCTCCCGAACTATTAATTAATCGAGCTATACTAACCCCGAAAAATAACGAAGTTGACCACATAAATGATTTGCTCATTAATAGATTTCAAGGAGAGTCATTTAAATATCATAGTTTTGATGAAATAATAGATTCAAATGAACAAGGAAATCATGAAGATTTTTTAAATAGTTTAACTCCAAATGGACTTCCCCCTTACATACTAACCTTAAAACAAAACTGCCCAATGATGCTGCTAAGAAATATTGATCCTTCAGATGGCTTATGTAACGGTACACGCTTGATTTGTCGCCAATTCTCGAAAAATGTGATCGATGCTGAAATAGCAATTGGGCCTCAACGTGGGAAAAAAGTTTTTCTTCCAAGAATTCCTCTAAAACCAAGTGAGAATGACAAATATGCTATTCCTTTTACAAGAAAACAATTCCCTATTAGGTTATGCTTTGCAATGACTATAAATAAGGCACAAGGACAAACATTAGATTACGCCGGTATTTATCTTCCCCAACCAGTTTTTTCGCATGGACAATTATATGTAGCTCTATCTCGGGTCAAAACCTCCGATAACATCAAAGTTCTTTCTATTCCAAATGAAGAGAACTCTAACAATGGCTGCACAAGAAACGTTGTGTACAAAGAAATATTAACACTTGCAAAAATTGCTTAGTTTAATATTGCATATGTATGAATTACTCCGCTTGATATATAATTCAGTATGTATAGTACTTCATTTTTTCTTTTGACATTTATGTGTACTTAATATTTAAGTTTGACTGATGTGGTCCTTATTATCCTCTTGATATTAACATCAATTCACTTATTTTTTTTTATCTTTACCAGTAACTTATGTCTATATTGTCACAAGACCATCAAAACATGTCACGCCGATGTACCTATATTAACAACGTTACTCCTCAAACAAAAAATTGGACTGTCAAAGTACGAGTTATAGAAAAGTCGTATGAACGACCATCTTTCAATGCTACCCATAAATACCAAAGGTTAATCCTCATTGATGGGCAGGTACATAAATATATTCTCCTTTTCGTGTTATGGTTTTATAGTATCAGATACTCAATCATAGACGTGGAAGTATTGTTTTAATTTGCACTTTTAATTATTCTCATGCATAGTGCCAATTGATTATTTCTCTTTGAACTCTACCCCCTCCTTCATCTGAAACATTTTCTTCTCTTTTGGCTACTTGGATCTAAAAGTCTCACTGATTTGTTTATCTTCATATGCACTCTCGTTCTCTCAAATCCATTTCTTGTCTTTTGGCTACATGGATCTAAAAGTCTCACTGATTTGTTTATCTTCATATGCACTCTGGTTCTCTCAAATCCATTTCTTGTCTTTTGGCTCCGTGGATCTAAAAATCTCACTGATTTGTCTATCTTCATATGCACTTCGTGAAACTCATTATTTTCCTGTTTTCTCAAATCCAGTGATCTGTAACAACATCTTATATGTGTCTCTTTCACCTCCATGTCTTCACAGCAGTAGTTTATTTTCCTCTTCAGTTCTAAGTCTCTGTATTCCTCTGTTAATTGTTTTTTTACTGGTTCAACAGCTTGAAGTGCCTCATTCAGTTGATTTTTTTTTCAACTCAACTACCCTACACTGCTCATTGGTCTTTTTTTTCTTCAACTCCAGTCTTTGATAACATTTATCGATATGCTTCTATTTTAGTTCAAGAACTTGGAGGCTCTCATTCAGTGTCTTCTCTTGCAACTCAATCTTCATCGGTTTATCCTTGAACTTCAAACATTGGTAACACTTAAGAATGTGCTTCTCTTTCAACTCCAAACTTTGGAAACGCTCATCAGGTCATTTCTCTTTCAACTCCAAATTTCGGGAACGCTTATGAATGTGCTTCTCTTTCAACTTCAAACTTTGGGAACGTTCATAAATATGCTCCTCTTTCAACTCCAAATTCCGGTAACACTTATCAATGTGCTTCTCTTTGCATTCCTAAATCTCGTGGTACACATCAACTTGCTGCTCCCTGAAATCCAATTCTGCAAACCTGTAATTCAATTCCTTTTCTTTTTTTTCCTACTGCTAGACAAAGTTCATCAACTCCCTTCATTAAATCATTCTCTTTAAGAATCTTATCAATTACCTTTTCTTTTAACTCCAATGTTCAGACACTTTCATTCATTTTCTTTTCTTTTAAGTTTTCTGCCAAGAGACATTCATCAATACCATTCTGTGCCAACTCCAGCCTCACATAACTCTCATTGAGTTGTTTCTCTTTCAAATCCAATCTATAAAGACGACCATTCATTTCTTTTTCTTTCGATTCTACTACTCTACACCTACCATCAACTTCCCTCTCCATCAACTCCACCTCTTTCCGACTCTCATCGATTTGCTTCTGTTTCAAATTCAATTCTCGAGCACTTTCACTCAATTCCTCTTCTTTCAAGGTCATTGCCAACAAACACTAATCAACATCTTTTTCTGTCGACTCCAGCTTTTCTCGACGCACATTCAACTCTTTCTCTTTCGATTACAACAACCAGAGACCTTCACTCAATTCATTTACTGTCAATTCATCCTTCTTCAACTCCAATTCCTTCCAACAAGCCAAAAACCCCTCATCCACTTTCCTCTCCCTCTCTTTCAACTCCTGAAACTGCTCTTGAATTCGCCTTTCCTTCATCCCTTCTTCCCGCTCCATCATTTCCTTCTCCCTCAACTGAAACACCTCATCCACATTGCAACAAGCCACAAATTGCTTCTCTCTCATCTCTAACACTCTGTACCGCTCCTCAATTTCCTTCGCCTCGACCTCGGCAAACTTCTTTCTTAACCCTTCCGACGCTTTCCTATTCTCTAGAACCTGCCTCTTCTTCGACTCAATCATCTCATACCTCTATTTTACACTAATCATCTCATACCTCTGCTTTCCACCTCTTTCTCTCGCAACTCCACAGTCTCCTCTTTTACATTAAAAGAAAGTTATAGTGTAGTTGGTTGTAAGAAGTTAAAGTCAATTCTTATTTACTACTATAGTGTAGTTGGTTGTAAGAAGATTTTGGAACTGCTAAATCAGGTAACCCATGAGTTAACTCATTCCATTCTTTAAGTTATTGGTAAGACTTACAAGGCTTTAGTATATGTGTGTAGCATACGTAATCAGTTGGAAAGAAATAAAGAGAGTTTATATATGTAGAATGCATAGGAGTAATATCCATACTATTTTTAAAAATTTTATTCATTGTGATTTCTTGTGCACGTATGGAACAAATCAGTTGGTAAGACTTACAAGAGTTTAGTTTTTTTAAGAAAAATAAAGAGAGGTCATATGTGCAGAATGCATAGGAGTAGTGTCCATACTGTGCTATTTTAAAATTTTCATTCATTGTGATTTCTTGCATATGTATGAGACTCTGATTCTTCCGTTAAGCTAACTGTTTATATCATTTGAATTACCCTAATAATAGTATGCATGGTTTGCAGGAAACACATGTTCAAGCAACTATTTTTGGTCGCGACATTGCTTCATTTGAAAGAACACTAGATGTCCTTGGCCAGTACTACATTTCAAACGCAGTAGTTAAACCCATTGCTGAAAAACATCGCATTGTGAACCACAAATATCAGTGGATAATCAGCACAAAAACTCCTGTAAGCGAGGTTCCAGACAACGAAACAGAGGATAAAAACATCCCAGCTCCTTTTAACCTCGTGCCACTCAACGAGCTTGAAAAAATAAGGATTCCACATTCCAAGTTGGTAAGAAAAATTCCAAACACATGCATTTGTCAAAATATATACAATTGCATATCAGTAACTTCCTATTTTCTCTCAGATGTTTTAG

mRNA sequence

TTTCCCCAAATTGCCCTTTTTTCTTTCAATAATTACATCCTACCTCTTTATATTTAGTATACTCTAGAAACTCAGTAAGATTGTGCTCCGTTCTCTCCGCATAACCCCTTCAACTTCTCTACAAACTCAAGCTCCATCAAAATCGCAGCCATCAAGACAAACTCAAGCCCCATAAAAAAACGCAGCCATCAAGAAAACTCAAGAAAGTGCATGTATGTAGGTCACAAAATACACGGAAGAGGTGAAAACGACAAGCTTTTAAGATCGAGGCTTGTGGGCTCATATTTGTATAAAGATCTTATCATTGGTGTTACAAGTCCTGAAAATAACTGTAACTTATGTCTATATTGTCACAAGACCATCAAAACATGTCACGCCGATGTACCTATATTAACAACGTTACTCCTCAAACAAAAAATTGGACTGTCAAAGTACGAGTTATAGAAAAGTCGTATGAACGACCATCTTTCAATGCTACCCATAAATACCAAAGGTTAATCCTCATTGATGGGCAGGAAACACATGTTCAAGCAACTATTTTTGGTCGCGACATTGCTTCATTTGAAAGAACACTAGATGTCCTTGGCCAGTACTACATTTCAAACGCAGTAGTTAAACCCATTGCTGAAAAACATCGCATTGTGAACCACAAATATCAGTGGATAATCAGCACAAAAACTCCTGTAAGCGAGGTTCCAGACAACGAAACAGAGGATAAAAACATCCCAGCTCCTTTTAACCTCGTGCCACTCAACGAGCTTGAAAAAATAAGGATTCCACATTCCAAGTTGATGTTTTAG

Coding sequence (CDS)

ATGTCTATATTGTCACAAGACCATCAAAACATGTCACGCCGATGTACCTATATTAACAACGTTACTCCTCAAACAAAAAATTGGACTGTCAAAGTACGAGTTATAGAAAAGTCGTATGAACGACCATCTTTCAATGCTACCCATAAATACCAAAGGTTAATCCTCATTGATGGGCAGGAAACACATGTTCAAGCAACTATTTTTGGTCGCGACATTGCTTCATTTGAAAGAACACTAGATGTCCTTGGCCAGTACTACATTTCAAACGCAGTAGTTAAACCCATTGCTGAAAAACATCGCATTGTGAACCACAAATATCAGTGGATAATCAGCACAAAAACTCCTGTAAGCGAGGTTCCAGACAACGAAACAGAGGATAAAAACATCCCAGCTCCTTTTAACCTCGTGCCACTCAACGAGCTTGAAAAAATAAGGATTCCACATTCCAAGTTGATGTTTTAG

Protein sequence

MSILSQDHQNMSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGRDIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKNIPAPFNLVPLNELEKIRIPHSKLMF

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21909.1	Spo21909.1	mRNA

Homology

[Close]

BLAST of Spo21909.1 vs. NCBI nr
Match: gi|902234132|gb|KNA23339.1| (hypothetical protein SOVF_025630 isoform B [Spinacia oleracea])

HSP 1 Score: 222.6 bits (566), Expect = 4.600e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 70
           MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR
Sbjct: 1   MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 60

Query: 71  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSE 119
           DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSE
Sbjct: 61  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSE 108

[Close]

BLAST of Spo21909.1 vs. NCBI nr
Match: gi|1009163784|ref|XP_015900147.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Ziziphus jujuba])

HSP 1 Score: 97.8 bits (242), Expect = 1.700e-17
Identity = 55/131 (41.98%), Postives = 79/131 (60.31%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 70
           M R    I ++  Q + WTVKV +IEK+  R S ++ +KYQRLIL D +   +QATI+G 
Sbjct: 1   MVREVKLIKDIQAQQRGWTVKVVIIEKAMPRVSKSSPNKYQRLILADEEGNKIQATIYGG 60

Query: 71  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKNIP 130
           DI  F  TL +   YYISNA VK I  +++IV +  QW I+ +T V EV  +   +  +P
Sbjct: 61  DIHIFRDTLIIGKNYYISNAWVKEIGAQYQIVQNNLQWTINGRTIVEEVTGD--SEIIVP 120

Query: 131 APFNLVPLNEL 142
           A ++ VP + L
Sbjct: 121 AVYSFVPFSRL 129

[Close]

BLAST of Spo21909.1 vs. NCBI nr
Match: gi|970058394|ref|XP_015055894.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like isoform X2 [Solanum pennellii])

HSP 1 Score: 82.4 bits (202), Expect = 7.500e-13
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 70
           M+ R T IN +TP TKNWT KV+V++KS  R + + T KYQ LIL D +E  VQATIF  
Sbjct: 1   MAERYT-INMITPDTKNWTCKVQVVDKSRPRDNKDKTTKYQVLILQDEEENQVQATIFST 60

Query: 71  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKNIP 130
           DI  FE+       Y +S A VK     +    +K+ W +   T V  + + +  +  +P
Sbjct: 61  DITYFEKEFAPFKTYLVSVAYVKVPPLGYENPLNKFVWTLDKNTIVEPIEEVKPPEDPLP 120

Query: 131 APFNL 136
            P  L
Sbjct: 121 PPTRL 124

[Close]

BLAST of Spo21909.1 vs. NCBI nr
Match: gi|970058390|ref|XP_015055892.1| (PREDICTED: uncharacterized protein LOC107002396 isoform X1 [Solanum pennellii])

HSP 1 Score: 82.4 bits (202), Expect = 7.500e-13
Identity = 49/125 (39.20%), Postives = 68/125 (54.40%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 70
           M+ R T IN +TP TKNWT KV+V++KS  R + + T KYQ LIL D +E  VQATIF  
Sbjct: 1   MAERYT-INMITPDTKNWTCKVQVVDKSRPRDNKDKTTKYQVLILQDEEENQVQATIFST 60

Query: 71  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKNIP 130
           DI  FE+       Y +S A VK     +    +K+ W +   T V  + + +  +  +P
Sbjct: 61  DITYFEKEFAPFKTYLVSVAYVKVPPLGYENPLNKFVWTLDKNTIVEPIEEVKPPEDPLP 120

Query: 131 APFNL 136
            P  L
Sbjct: 121 PPTRL 124

[Close]

BLAST of Spo21909.1 vs. NCBI nr
Match: gi|848889405|ref|XP_012844865.1| (PREDICTED: replication protein A 70 kDa DNA-binding subunit B-like [Erythranthe guttata])

HSP 1 Score: 80.9 bits (198), Expect = 2.200e-12
Identity = 37/100 (37.00%), Postives = 59/100 (59.00%), Query Frame = 1


		  
Query: 18  INNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGRDIASFER 77
           I +V P    W++KV V + +  + S+++  +YQR++  DG      ATIF  DI+ FE+
Sbjct: 9   IQDVLPSIPRWSIKVVVHDIAKPQQSYSSPKRYQRIVFADGSGQKAMATIFDNDISKFEK 68

Query: 78  TLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVS 118
              +   Y ISNA + P+AEK+    + YQWII+ +T +S
Sbjct: 69  VFVLFETYKISNAKITPLAEKYNKFGYPYQWIITARTAIS 108

[Close]

BLAST of Spo21909.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RWP0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_025630 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.200e-55
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 70
           MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR
Sbjct: 1   MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 60

Query: 71  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSE 119
           DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSE
Sbjct: 61  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSE 108

[Close]

BLAST of Spo21909.1 vs. UniProtKB/TrEMBL
Match: K4BG97_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.800e-14
Identity = 50/126 (39.68%), Postives = 70/126 (55.56%), Query Frame = 1


		  
Query: 10  NMSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFG 69
           NM+ R T IN +TP TKNWT KV+V++KS  R + + T KYQ LIL D +E  VQATIF 
Sbjct: 448 NMAERYT-INMITPDTKNWTCKVQVVDKSRPRDNKDKTTKYQVLILQDEEENQVQATIFS 507

Query: 70  RDIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKNI 129
            DI  FE+       Y +S A VK +   +    +K+ W +   T V  + + +  +  +
Sbjct: 508 TDITYFEKEFAPFKTYLVSVAYVKVLPLGYENPLNKFVWTLDKNTIVEPIEEVKPPEDPL 567

Query: 130 PAPFNL 136
           P P  L
Sbjct: 568 PPPTRL 572

[Close]

BLAST of Spo21909.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IEN4_SOLCH (Putative replication protein A 70 kDa DNA-binding subunit B-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.800e-12
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 70
           M+ R T I  +TP TK+WT KV+V++KS  R + + T KYQ LIL D +E  +QATI+  
Sbjct: 1   MAERYT-IKMITPDTKDWTCKVQVVDKSRPRDNKDKTTKYQVLILQDEEENQIQATIYST 60

Query: 71  DIASFERTLDVLGQYYISNAVVK--PIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKN 130
           DI  FER       Y +S A VK  P+  ++ +  +K+ W +   T V  V + +  +  
Sbjct: 61  DITYFEREFAPFNTYLVSVAHVKVPPLGYENSL--NKFIWTLDKNTIVEPVEEVKPPEDP 120

Query: 131 IPAPFNL 136
           +P P  L
Sbjct: 121 LPPPRRL 124

[Close]

BLAST of Spo21909.1 vs. UniProtKB/TrEMBL
Match: M1AGH6_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG401008657 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.900e-11
Identity = 45/125 (36.00%), Postives = 66/125 (52.80%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGR 70
           M+ R T IN VT +TK WTVKV+V++K   R +   T+KYQ +IL D +ET VQ  ++G 
Sbjct: 1   MAERLT-INAVTSETKEWTVKVQVVDKGRPRDNLQKTNKYQLMILQDEEETQVQGIMYGS 60

Query: 71  DIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKNIP 130
           DI S+         Y IS A V      + I  + + W I   T +  + + E  + ++P
Sbjct: 61  DIKSYAELFLPYHTYLISVASVTESNHAYGIPINTFLWTIDKGTLIEPIEEVEPPEDSLP 120

Query: 131 APFNL 136
            P  L
Sbjct: 121 PPTRL 124

[Close]

BLAST of Spo21909.1 vs. UniProtKB/TrEMBL
Match: M1CX78_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400029822 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.100e-10
Identity = 40/131 (30.53%), Postives = 67/131 (51.15%), Query Frame = 1


		  
Query: 18  INNVTPQTKNWTVKVRVIEKSYERPSFNATHKYQRLILIDGQETHVQATIFGRDIASFER 77
           IN + P T++W  KV+++E +  R S +    +Q LIL D +E  ++  ++  +I  +  
Sbjct: 7   INQIEPATRDWICKVQIVEIARPRESLDKKCTFQNLILEDEEECQIKVVMYSDEIQQYAA 66

Query: 78  TLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKNIPAPFNLVP 137
           TL +L  Y IS A VK     +    HK+QW +  +T + ++  +   +K +P P     
Sbjct: 67  TLKLLNTYLISTAKVKVSPSSYGKPIHKFQWTLDKETVIEQIQASHEVEKPLPPP---TR 126

Query: 138 LNELEKIRIPH 149
           LN     RIPH
Sbjct: 127 LNITNFDRIPH 134

[Close]

BLAST of Spo21909.1 vs. ExPASy Swiss-Prot
Match: RFA1D_ARATH (Replication protein A 70 kDa DNA-binding subunit D OS=Arabidopsis thaliana GN=RPA1D PE=2 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.700e-7
Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHK--YQRLILIDGQETHVQATIF 70
           M+RR   + ++ P   NWT+KVRV  K   R   NA  +     + L D + T +QAT+F
Sbjct: 177 MTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMF 236

Query: 71  GRDIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKN 130
                 F     +   YYIS   +K   ++ + V + Y+  ++     SEV +  +E+  
Sbjct: 237 NDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNEN---SEVEEASSEEMF 296

Query: 131 IP-APFNLVPLNEL 142
           IP   FN VP+ EL
Sbjct: 297 IPETKFNFVPIEEL 307

[Close]

BLAST of Spo21909.1 vs. TAIR (Arabidopsis)
Match: AT5G61000.1 (Replication factor-A protein 1-related)

HSP 1 Score: 56.6 bits (135), Expect = 1.500e-8
Identity = 42/134 (31.34%), Postives = 65/134 (48.51%), Query Frame = 1


		  
Query: 11  MSRRCTYINNVTPQTKNWTVKVRVIEKSYERPSFNATHK--YQRLILIDGQETHVQATIF 70
           M+RR   + ++ P   NWT+KVRV  K   R   NA  +     + L D + T +QAT+F
Sbjct: 177 MTRRVHPLVSLNPYQGNWTIKVRVTNKGVMRNYKNARGEGCVFNVELTDEEGTQIQATMF 236

Query: 71  GRDIASFERTLDVLGQYYISNAVVKPIAEKHRIVNHKYQWIISTKTPVSEVPDNETEDKN 130
                 F     +   YYIS   +K   ++ + V + Y+  ++     SEV +  +E+  
Sbjct: 237 NDAARKFFDRFQLGKVYYISRGSLKLANKQFKTVQNDYEMTLNEN---SEVEEASSEEMF 296

Query: 131 IP-APFNLVPLNEL 142
           IP   FN VP+ EL
Sbjct: 297 IPETKFNFVPIEEL 307

The following BLAST results are available for this feature:

BLAST of Spo21909.1 vs. NCBI nr
BLAST of Spo21909.1 vs. UniProtKB/TrEMBL
BLAST of Spo21909.1 vs. ExPASy Swiss-Prot
BLAST of Spo21909.1 vs. TAIR (Arabidopsis)

BLAST of Spo21909.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902234132\|gb\|KNA23339.1\|	4.6e-55	100.	hypothetical protein SOVF_0256...	[more]
gi\|1009163784\|ref\|XP_015900147.1\|	1.7e-17	41.9	PREDICTED: replication protein...	[more]
gi\|970058394\|ref\|XP_015055894.1\|	7.5e-13	39.2	PREDICTED: replication protein...	[more]
gi\|970058390\|ref\|XP_015055892.1\|	7.5e-13	39.2	PREDICTED: uncharacterized pro...	[more]
gi\|848889405\|ref\|XP_012844865.1\|	2.2e-12	37.0	PREDICTED: replication protein...	[more]

BLAST of Spo21909.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9RWP0_SPIOL	3.2e-55	100.	Uncharacterized protein OS=Spi...	[more]
K4BG97_SOLLC	2.8e-14	39.6	Uncharacterized protein OS=Sol...	[more]
A0A0V0IEN4_SOLCH	9.8e-12	37.8	Putative replication protein A...	[more]
M1AGH6_SOLTU	2.9e-11	36.0	Uncharacterized protein OS=Sol...	[more]
M1CX78_SOLTU	1.1e-10	30.5	Uncharacterized protein OS=Sol...	[more]

BLAST of Spo21909.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 1


Match Name	E-value	Identity	Description
RFA1D_ARATH	2.7e-7	31.3	Replication protein A 70 kDa D...	[more]

BLAST of Spo21909.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G61000.1	1.5e-8	31.3	Replication factor-A protein 1...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003871	Domain of unknown function DUF223	PFAM	PF02721	DUF223	coord: 52..136 score: 2.
IPR012340	Nucleic acid-binding, OB-fold	GENE3D	2.40.50.140		coord: 16..116 score: 1.0
IPR012340	Nucleic acid-binding, OB-fold	unknown	SSF50249	Nucleic acid-binding proteins	coord: 16..122 score: 7.71
None	No IPR available	PANTHER	PTHR23273	REPLICATION FACTOR A 1, RFA1	coord: 9..142 score: 1.7
None	No IPR available	PANTHER	PTHR23273:SF4	REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT	coord: 9..142 score: 1.7

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo26073	0.67	Barchart \| Table