Spo21920 (gene)

Overview
NameSpo21920
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_00709 : 75172 .. 78761 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGCGATGGCGTCAGCCCAAGCAAGCACTGAAGGATACAACTATTTCATGAATGTAACTAACGTAATGATCATGATACATTCATGCTAGGCTAATACTTCATATTAGTTTCAACTTTCACATCTCTGTCTCGTTATTTTTAAGTTTTTGGTTTCAGAGAATGTACTGTAAATTTATCATTTTGAGCCTTGTACTTTGGTACTCCTGATTTGTTATGTTGTACTACGTAGTTCTGAATAAAAATTACAGATTTTTTCCTTGTGGCATACATGTAACACCCTGATATTCCTTATATTTATAATTCCTTTTTCCGACTAATATAAAAGAATTACCAAGATATTACCGCCACCGTGATAACGGCTAAGGCTATTTATCAGAATAACGCAGCGGAAATAACTAACTTTCAAAACATAATAAATAGTTAATGGTCAATCAACAACCGGAACCATTAATGCCCAAAACCAAAGCATTAAATAGTTTAAAATTCATTAACTAAAGTTTAAATAAATACTGTAGTCATGACTAGAAAATAAAAGTAGAATTTATAAATACGGAAGAATAGATAATCTCTCAACTCAATCCCATGATAACTTCTCCCGCAAGTTATCTCTACAAACCTGTTTATTAAAGACTACTCCCACAACGCAAGTGCAATGATGGATCATCATAGAGTCATTAAGGCAAAGTCCATGACCGAAAGACATGAATCACGAAGTCAGTGAAAGCTGATTATGAGAGGTTTGGAGGAAGAAAAAGTTTTTTAAGGTGAATTAGATGTTTGGCCCTTTCAAAAAGTTAATGAGAGGTTTGGAAGAAAGTTTCCCAATGAACAAGCTAATGTTGAAAAAATATTCAATATAAGAGCTTTTTGCATTAGATGTTTGAAAAAGTTAGTGTAAATGACAATTTTGTCGTATATTGTCCAAAATTTAACAACCCCCATTATGTCAATGTCCTTAATGGACATGTTACACATTAAATAACTAACAACTAAAAACTACTCCCTCCGTCCCGAAATACTTGAAACACTTTCATTATAAGGCCGTCCTAGATTACTTGCAACGTTTCTAAAAATGGAAAATTTTATTAATATTATATCAATTTCTTACTTACTCAAGGACCCACCTACATTTCTACTCCCTAAAATAAACATTAAAAATTTTCACTACCCCACCCCCACCCCCTTACCCCTTTAAAAGTTTGACACACACCCACTACCTATATTAAAAAAAATATCCCACTACCAACTACTCCCTCCGTCTCTTTTTGTTCTTTACGTTTGATATTTTTCACGCTTTTTAACGATTAATTAATTTGCATCGAGATTCCTCAAATTTTTTTTATTTAAACAAGATAAATTACGTTTATTTACAATGTTTTCACTTTTATCAAAATTCTGATATTGGAAAATGGGACAAATTTAATGTCCCAATGGAAAAGTGTGAGAGATTAAATGACCCAATGAATTTAATTGGTTAAAATAATAATTGGACACAAATTTTGATAGAATACTAAGTCATTTATGTGATAATATAAAAAGAAATGTAAAAAACATTTTGAAATACCCAAAAAGGAAAATGTAAAGAACAGAAAGAGACGGATGGAGTATCATCTAATTAAATAATAAGTCAATTATAATTCATTAAACTCTGTACCGGTCAAACCGTTTTGAGTATTTCGGGACGGAAGGAGTAACAATTAGTCAAACCAGCTAACAACTAGTCGCCAAAAAATCAGGCTAACATTTGAATTGCTTTTTGCTAATCATGAGTTTTTTTTATGAAAGTTAACTTGTGCTCCTATGTAGGAATCTTGTAGTGTGGTCGGATCTTCGTATCTTGAACGTGGAGGTGAGTTCCTGCAAAGTGAACCCTGAACCCGGAGAGGTTCCCCGGATCGGGACATCCGACGCCCATTATTAGTGTCTGGTATAATAAAGAGAGATAAAGTAGAGAGAGTAGAGTGTGAGAGTGGAGGAATCTTCTTTCTTACCTTGCCCTAAAATAGGTATTTATAGGACTTGTGAGATTTAGGTCATAGACTAAAGTTATATTTCATGGTTTGGGCCTTAGGATCCTTAATTGAGCTCAATGAAGTATCCCGTACAACTTGTTATTTCCACCGTTATTTTCTTGCTATTACTTTAGCTAGAATGTATTAACTGAATACAGATTACTTTCAAGAATAGAAGTAGTAGTTGAGCAACCACAGTCACAGATAACCTTCATCCATGCACGAAACCCCCAAATAAACATAACGGCGTTCGTGTCCATTTTTCAAATTGGTTAACTTTCTAATCACCCTCTTTGGCCTCTTAACTTGCTAGTTCGTACTATATTTTCATAACAAGTTCTTCCCTAGACTAATTAAGTATTAGCGTGTGTAGATTTTTTTTTTTTTTAACCGCGTTAAGAAAGGGGGGTGGCATAGTAGAAAGGAGGACTTAGACCGCAATTTCGATGGTGCAGGCGTGTGCACCTAGATCTAGGTGCACTGGGATTAAAACGCAAACATTTTAAAACAAAACGCGTATTTTCATTAATTCTGCAGTTAAAAAGAACAAGTCTCACAATACAAAAGAACATCATGTGCTCTGTTCTTCCCTGTTTAGTTTTCGCGATTTTTTTTGTTCTTCGCTCCTTTTTATATGTCTGGGCTTCATAATTTTGAATTCAAAAAGTGTGAATAGGAGAGAGAAAGCTTACATTTGTGCATAAATTTTTTTTAGAGAGAGAAACTGATGGAAAATTCTCAAATATTCCATGATTTCTCTGTTTCAACATCAATTTCGAATGATTCTTCTTCTTGTCATCTGAATTCTTCAGCTGAAAATCAGAGTTACGAAGGTATTATTTCAATTTGTAATAACGAGTTGCATTTTTCTTTGATTTTATGATTTCGATTTCATAATAATCGTACTTTTTATGTTTTTTGTGATTGTAATTAGTTTGATTAATTTAATTTTGAATCTCATTCTTCGTTGATTTTGGTGATTGTTGATAATGAAGGTTACGAATTGGTTTTTTCGTTGATTTCGCATTTATTTCATTTATGTGGTGAAACTGATTCTGTAATAACTATTATATTTAAGGAAGATACGTTGATTTTGTCTGTTTGCAGAAAAGAACATTGTATCATTTCAGAAGAACATTTTTCAGTATCAAATGAACATGTTAAGAATACGTATTGAGACGTTCCTTTTTATTATATTTAGCTTTTCAAATAAACACTGATTGTTCTTTATTGATTGTTCTTTTAACTCTTCATTGATTGTTCTTTAAGTCATAGTGTTCTTTTCGGTCACCTTTTGTGTTCGTTTACTCTATTTTTATTGTTCATTTTAATAGTTACTGTTCCTTTGATTCTTTATTGGTTTTTTTANCGAGGTGCCAAAACCAGAGGTGCCAAAGATGCCCGAAGTACCAGAACTACCAAAGCCCGAGGTGCCAAAACTCGAGGCACCAAAATTGCCGGAGATGCCTGGCCATGGCCTCCCTAAACCCACAATACCTGAACTACCTAAGCCCACAATGCCTGAGTTACCCAAATTTGATCTACCTAAGGACCCAAAACCCACTGTGCCTTGA

mRNA sequence

ATGTCGGCGATGGCGTCAGCCCAAGCAAGCACTGAAGGATACAACTATTTCATGAATGTGCCAAAACCAGAGGTGCCAAAGATGCCCGAAGTACCAGAACTACCAAAGCCCGAGGTGCCAAAACTCGAGGCACCAAAATTGCCGGAGATGCCTGGCCATGGCCTCCCTAAACCCACAATACCTGAACTACCTAAGCCCACAATGCCTGAGTTACCCAAATTTGATCTACCTAAGGACCCAAAACCCACTGTGCCTTGA

Coding sequence (CDS)

ATGTCGGCGATGGCGTCAGCCCAAGCAAGCACTGAAGGATACAACTATTTCATGAATGTGCCAAAACCAGAGGTGCCAAAGATGCCCGAAGTACCAGAACTACCAAAGCCCGAGGTGCCAAAACTCGAGGCACCAAAATTGCCGGAGATGCCTGGCCATGGCCTCCCTAAACCCACAATACCTGAACTACCTAAGCCCACAATGCCTGAGTTACCCAAATTTGATCTACCTAAGGACCCAAAACCCACTGTGCCTTGA

Protein sequence

MSAMASAQASTEGYNYFMNVPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKDPKPTVP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo21920.1Spo21920.1mRNA


Homology
[Close]
BLAST of Spo21920.1 vs. NCBI nr
Match: gi|902232919|gb|KNA22847.1| (hypothetical protein SOVF_030290 [Spinacia oleracea])

HSP 1 Score: 131.0 bits (328), Expect = 1.000e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

		  

Query: 20  VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 79
           VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD
Sbjct: 287 VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 346

Query: 80  PKPTVP 86
           PKPTVP
Sbjct: 347 PKPTVP 352
[Close]
BLAST of Spo21920.1 vs. NCBI nr
Match: gi|731352933|ref|XP_010687801.1| (PREDICTED: proteoglycan 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.7 bits (182), Expect = 8.600e-11
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1 

		  

Query: 18  MNVPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFD 77
           + VPKPEVP++P+   PELPKP +P+L  P LPE     LPKPT PELPKPTMPELPK  
Sbjct: 40  LEVPKPEVPELPKPTFPELPKPTMPELPKPVLPE-----LPKPTFPELPKPTMPELPKPV 99

Query: 78  LPKDPKPTVP 86
           LP+ PKPT+P
Sbjct: 100 LPELPKPTLP 104
[Close]
BLAST of Spo21920.1 vs. NCBI nr
Match: gi|731378790|ref|XP_010668273.1| (PREDICTED: proteoglycan 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.7 bits (182), Expect = 8.600e-11
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1 

		  

Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLP 79
           +PKP VP++P+  +PE+PKP VP+L  PKLPE     LPKPT+PE+PKPTMPE+PK  LP
Sbjct: 186 IPKPTVPELPKPTLPEIPKPTVPELPKPKLPE-----LPKPTVPEVPKPTMPEVPKPALP 245

Query: 80  KDPKPTVP 86
           + PKPT+P
Sbjct: 246 EMPKPTMP 248
[Close]
BLAST of Spo21920.1 vs. NCBI nr
Match: gi|731357502|ref|XP_010690245.1| (PREDICTED: proteoglycan 4-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-10
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1 

		  

Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLP---KPTIPELPKPTMPELPKF 79
           +PKP VP++P+  VPE+PKP VP++  PKLPE+P   +P   KPT+PELPKPT+PE+PK 
Sbjct: 186 IPKPTVPELPKPTVPEIPKPTVPEVPKPKLPELPKPTVPEVHKPTMPELPKPTLPEMPKP 245

Query: 80  DLPKDPKPTVP 86
            LP+ PKP VP
Sbjct: 246 TLPELPKPAVP 256
[Close]
BLAST of Spo21920.1 vs. NCBI nr
Match: gi|802578032|ref|XP_012069314.1| (PREDICTED: periaxin-like [Jatropha curcas])

HSP 1 Score: 73.2 bits (178), Expect = 2.500e-10
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1 

		  

Query: 18  MNVPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPG---HGLPKPTIPELPKPTMPELPKF 77
           + VP+PE+   PE+PELPKPE+P LE PK PE+P      LPKP +PELPKP +PELPK 
Sbjct: 67  LEVPEPEL---PEIPELPKPELPGLEVPKFPELPKPEVPELPKPEVPELPKPEVPELPKP 126

Query: 78  DLPKDPKPTVP 86
           ++P+ PKP VP
Sbjct: 127 EVPELPKPEVP 134
[Close]
BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVI3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_030290 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.100e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1 

		  

Query: 20  VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 79
           VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD
Sbjct: 287 VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 346

Query: 80  PKPTVP 86
           PKPTVP
Sbjct: 347 PKPTVP 352
[Close]
BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BU75_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191590 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.000e-11
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1 

		  

Query: 18  MNVPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFD 77
           + VPKPEVP++P+   PELPKP +P+L  P LPE     LPKPT PELPKPTMPELPK  
Sbjct: 40  LEVPKPEVPELPKPTFPELPKPTMPELPKPVLPE-----LPKPTFPELPKPTMPELPKPV 99

Query: 78  LPKDPKPTVP 86
           LP+ PKPT+P
Sbjct: 100 LPELPKPTLP 104
[Close]
BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B4K0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015530 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.000e-11
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1 

		  

Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLP 79
           +PKP VP++P+  +PE+PKP VP+L  PKLPE     LPKPT+PE+PKPTMPE+PK  LP
Sbjct: 186 IPKPTVPELPKPTLPEIPKPTVPELPKPKLPE-----LPKPTVPEVPKPTMPEVPKPALP 245

Query: 80  KDPKPTVP 86
           + PKPT+P
Sbjct: 246 EMPKPTMP 248
[Close]
BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJR2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212650 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.900e-11
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1 

		  

Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLP---KPTIPELPKPTMPELPKF 79
           +PKP VP++P+  VPE+PKP VP++  PKLPE+P   +P   KPT+PELPKPT+PE+PK 
Sbjct: 186 IPKPTVPELPKPTVPEIPKPTVPEVPKPKLPELPKPTVPEVHKPTMPELPKPTLPEMPKP 245

Query: 80  DLPKDPKPTVP 86
            LP+ PKP VP
Sbjct: 246 TLPELPKPAVP 256
[Close]
BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMJ2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212660 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-10
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1 

		  

Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHG---LPKPTIPELPKPTMPELPKF 79
           VPKP VP++P+  +PE+PKP VP++  P +PE+P      LPKPT+PE+PKPT+PE+PK 
Sbjct: 153 VPKPTVPELPKPTLPEIPKPTVPEIPKPTVPEIPKPTVPELPKPTLPEIPKPTVPEVPKP 212

Query: 80  DLPKDPKPTVP 86
            LP+ PKPTVP
Sbjct: 213 KLPELPKPTVP 223
[Close]
BLAST of Spo21920.1 vs. TAIR (Arabidopsis)
Match: AT5G09520.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 63.5 bits (153), Expect = 7.000e-11
Identity = 44/85 (51.76%), Postives = 51/85 (60.00%), Query Frame = 1 

		  

Query: 13  GYNYFMNVPKPEVPKMPEVP--ELPK-PEVPKLEAPKLPEMPGHGLPK---------PTI 72
           G    +  PKPE+P  PE+P  E+PK PE PKLE PKLPE+P   +PK         PT 
Sbjct: 31  GARRLLEEPKPEIPTFPELPKPEMPKLPEFPKLELPKLPEIPKPEMPKLPEIQKPELPTF 90

Query: 73  PELPKPTMPELPKFDLPKDPKPTVP 86
           PELPK  MPE PKFD PK P+   P
Sbjct: 91  PELPK--MPEFPKFDFPKLPELPKP 113
[Close]
BLAST of Spo21920.1 vs. TAIR (Arabidopsis)
Match: AT5G09530.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.600e-10
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 1 

		  

Query: 17  FMNVPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDL 76
           F  +PKPE+PKMPE+P+   P+VP+++ P+LP+MP   +PKP +P+ P+   P+LPKF  
Sbjct: 114 FPEIPKPELPKMPEIPKPELPKVPEIQKPELPKMP--EIPKPELPKFPEIPKPDLPKF-- 173

Query: 77  PKDPKPTVP 86
           P++ KP VP
Sbjct: 174 PENSKPEVP 178
The following BLAST results are available for this feature:
BLAST of Spo21920.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902232919|gb|KNA22847.1|1.0e-27100.hypothetical protein SOVF_0302... [more]
gi|731352933|ref|XP_010687801.1|8.6e-1164.2PREDICTED: proteoglycan 4-like... [more]
gi|731378790|ref|XP_010668273.1|8.6e-1161.7PREDICTED: proteoglycan 4-like... [more]
gi|731357502|ref|XP_010690245.1|1.1e-1059.1PREDICTED: proteoglycan 4-like... [more]
gi|802578032|ref|XP_012069314.1|2.5e-1059.1PREDICTED: periaxin-like [Jatr... [more]
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BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RVI3_SPIOL7.1e-28100.Uncharacterized protein OS=Spi... [more]
A0A0J8BU75_BETVU6.0e-1164.2Uncharacterized protein OS=Bet... [more]
A0A0J8B4K0_BETVU6.0e-1161.7Uncharacterized protein OS=Bet... [more]
A0A0J8BJR2_BETVU7.9e-1159.1Uncharacterized protein OS=Bet... [more]
A0A0J8BMJ2_BETVU3.9e-1057.7Uncharacterized protein OS=Bet... [more]
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BLAST of Spo21920.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo21920.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G09520.17.0e-1151.7hydroxyproline-rich glycoprote... [more]
AT5G09530.14.6e-1049.2hydroxyproline-rich glycoprote... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33088FAMILY NOT NAMEDcoord: 20..85
score: 4.7

RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo155440.91Barchart | Table