Spo21920 (gene) | SpinachBase

Overview


Name	Spo21920
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	SpoScf_00709 : 75172 .. 78761 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCGGCGATGGCGTCAGCCCAAGCAAGCACTGAAGGATACAACTATTTCATGAATGTAACTAACGTAATGATCATGATACATTCATGCTAGGCTAATACTTCATATTAGTTTCAACTTTCACATCTCTGTCTCGTTATTTTTAAGTTTTTGGTTTCAGAGAATGTACTGTAAATTTATCATTTTGAGCCTTGTACTTTGGTACTCCTGATTTGTTATGTTGTACTACGTAGTTCTGAATAAAAATTACAGATTTTTTCCTTGTGGCATACATGTAACACCCTGATATTCCTTATATTTATAATTCCTTTTTCCGACTAATATAAAAGAATTACCAAGATATTACCGCCACCGTGATAACGGCTAAGGCTATTTATCAGAATAACGCAGCGGAAATAACTAACTTTCAAAACATAATAAATAGTTAATGGTCAATCAACAACCGGAACCATTAATGCCCAAAACCAAAGCATTAAATAGTTTAAAATTCATTAACTAAAGTTTAAATAAATACTGTAGTCATGACTAGAAAATAAAAGTAGAATTTATAAATACGGAAGAATAGATAATCTCTCAACTCAATCCCATGATAACTTCTCCCGCAAGTTATCTCTACAAACCTGTTTATTAAAGACTACTCCCACAACGCAAGTGCAATGATGGATCATCATAGAGTCATTAAGGCAAAGTCCATGACCGAAAGACATGAATCACGAAGTCAGTGAAAGCTGATTATGAGAGGTTTGGAGGAAGAAAAAGTTTTTTAAGGTGAATTAGATGTTTGGCCCTTTCAAAAAGTTAATGAGAGGTTTGGAAGAAAGTTTCCCAATGAACAAGCTAATGTTGAAAAAATATTCAATATAAGAGCTTTTTGCATTAGATGTTTGAAAAAGTTAGTGTAAATGACAATTTTGTCGTATATTGTCCAAAATTTAACAACCCCCATTATGTCAATGTCCTTAATGGACATGTTACACATTAAATAACTAACAACTAAAAACTACTCCCTCCGTCCCGAAATACTTGAAACACTTTCATTATAAGGCCGTCCTAGATTACTTGCAACGTTTCTAAAAATGGAAAATTTTATTAATATTATATCAATTTCTTACTTACTCAAGGACCCACCTACATTTCTACTCCCTAAAATAAACATTAAAAATTTTCACTACCCCACCCCCACCCCCTTACCCCTTTAAAAGTTTGACACACACCCACTACCTATATTAAAAAAAATATCCCACTACCAACTACTCCCTCCGTCTCTTTTTGTTCTTTACGTTTGATATTTTTCACGCTTTTTAACGATTAATTAATTTGCATCGAGATTCCTCAAATTTTTTTTATTTAAACAAGATAAATTACGTTTATTTACAATGTTTTCACTTTTATCAAAATTCTGATATTGGAAAATGGGACAAATTTAATGTCCCAATGGAAAAGTGTGAGAGATTAAATGACCCAATGAATTTAATTGGTTAAAATAATAATTGGACACAAATTTTGATAGAATACTAAGTCATTTATGTGATAATATAAAAAGAAATGTAAAAAACATTTTGAAATACCCAAAAAGGAAAATGTAAAGAACAGAAAGAGACGGATGGAGTATCATCTAATTAAATAATAAGTCAATTATAATTCATTAAACTCTGTACCGGTCAAACCGTTTTGAGTATTTCGGGACGGAAGGAGTAACAATTAGTCAAACCAGCTAACAACTAGTCGCCAAAAAATCAGGCTAACATTTGAATTGCTTTTTGCTAATCATGAGTTTTTTTTATGAAAGTTAACTTGTGCTCCTATGTAGGAATCTTGTAGTGTGGTCGGATCTTCGTATCTTGAACGTGGAGGTGAGTTCCTGCAAAGTGAACCCTGAACCCGGAGAGGTTCCCCGGATCGGGACATCCGACGCCCATTATTAGTGTCTGGTATAATAAAGAGAGATAAAGTAGAGAGAGTAGAGTGTGAGAGTGGAGGAATCTTCTTTCTTACCTTGCCCTAAAATAGGTATTTATAGGACTTGTGAGATTTAGGTCATAGACTAAAGTTATATTTCATGGTTTGGGCCTTAGGATCCTTAATTGAGCTCAATGAAGTATCCCGTACAACTTGTTATTTCCACCGTTATTTTCTTGCTATTACTTTAGCTAGAATGTATTAACTGAATACAGATTACTTTCAAGAATAGAAGTAGTAGTTGAGCAACCACAGTCACAGATAACCTTCATCCATGCACGAAACCCCCAAATAAACATAACGGCGTTCGTGTCCATTTTTCAAATTGGTTAACTTTCTAATCACCCTCTTTGGCCTCTTAACTTGCTAGTTCGTACTATATTTTCATAACAAGTTCTTCCCTAGACTAATTAAGTATTAGCGTGTGTAGATTTTTTTTTTTTTTAACCGCGTTAAGAAAGGGGGGTGGCATAGTAGAAAGGAGGACTTAGACCGCAATTTCGATGGTGCAGGCGTGTGCACCTAGATCTAGGTGCACTGGGATTAAAACGCAAACATTTTAAAACAAAACGCGTATTTTCATTAATTCTGCAGTTAAAAAGAACAAGTCTCACAATACAAAAGAACATCATGTGCTCTGTTCTTCCCTGTTTAGTTTTCGCGATTTTTTTTGTTCTTCGCTCCTTTTTATATGTCTGGGCTTCATAATTTTGAATTCAAAAAGTGTGAATAGGAGAGAGAAAGCTTACATTTGTGCATAAATTTTTTTTAGAGAGAGAAACTGATGGAAAATTCTCAAATATTCCATGATTTCTCTGTTTCAACATCAATTTCGAATGATTCTTCTTCTTGTCATCTGAATTCTTCAGCTGAAAATCAGAGTTACGAAGGTATTATTTCAATTTGTAATAACGAGTTGCATTTTTCTTTGATTTTATGATTTCGATTTCATAATAATCGTACTTTTTATGTTTTTTGTGATTGTAATTAGTTTGATTAATTTAATTTTGAATCTCATTCTTCGTTGATTTTGGTGATTGTTGATAATGAAGGTTACGAATTGGTTTTTTCGTTGATTTCGCATTTATTTCATTTATGTGGTGAAACTGATTCTGTAATAACTATTATATTTAAGGAAGATACGTTGATTTTGTCTGTTTGCAGAAAAGAACATTGTATCATTTCAGAAGAACATTTTTCAGTATCAAATGAACATGTTAAGAATACGTATTGAGACGTTCCTTTTTATTATATTTAGCTTTTCAAATAAACACTGATTGTTCTTTATTGATTGTTCTTTTAACTCTTCATTGATTGTTCTTTAAGTCATAGTGTTCTTTTCGGTCACCTTTTGTGTTCGTTTACTCTATTTTTATTGTTCATTTTAATAGTTACTGTTCCTTTGATTCTTTATTGGTTTTTTTANCGAGGTGCCAAAACCAGAGGTGCCAAAGATGCCCGAAGTACCAGAACTACCAAAGCCCGAGGTGCCAAAACTCGAGGCACCAAAATTGCCGGAGATGCCTGGCCATGGCCTCCCTAAACCCACAATACCTGAACTACCTAAGCCCACAATGCCTGAGTTACCCAAATTTGATCTACCTAAGGACCCAAAACCCACTGTGCCTTGA

mRNA sequence

ATGTCGGCGATGGCGTCAGCCCAAGCAAGCACTGAAGGATACAACTATTTCATGAATGTGCCAAAACCAGAGGTGCCAAAGATGCCCGAAGTACCAGAACTACCAAAGCCCGAGGTGCCAAAACTCGAGGCACCAAAATTGCCGGAGATGCCTGGCCATGGCCTCCCTAAACCCACAATACCTGAACTACCTAAGCCCACAATGCCTGAGTTACCCAAATTTGATCTACCTAAGGACCCAAAACCCACTGTGCCTTGA

Coding sequence (CDS)

ATGTCGGCGATGGCGTCAGCCCAAGCAAGCACTGAAGGATACAACTATTTCATGAATGTGCCAAAACCAGAGGTGCCAAAGATGCCCGAAGTACCAGAACTACCAAAGCCCGAGGTGCCAAAACTCGAGGCACCAAAATTGCCGGAGATGCCTGGCCATGGCCTCCCTAAACCCACAATACCTGAACTACCTAAGCCCACAATGCCTGAGTTACCCAAATTTGATCTACCTAAGGACCCAAAACCCACTGTGCCTTGA

Protein sequence

MSAMASAQASTEGYNYFMNVPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKDPKPTVP

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21920.1	Spo21920.1	mRNA

Homology

[Close]

BLAST of Spo21920.1 vs. NCBI nr
Match: gi|902232919|gb|KNA22847.1| (hypothetical protein SOVF_030290 [Spinacia oleracea])

HSP 1 Score: 131.0 bits (328), Expect = 1.000e-27
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1

		  
Query: 20  VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 79
           VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD
Sbjct: 287 VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 346

Query: 80  PKPTVP 86
           PKPTVP
Sbjct: 347 PKPTVP 352

[Close]

BLAST of Spo21920.1 vs. NCBI nr
Match: gi|731352933|ref|XP_010687801.1| (PREDICTED: proteoglycan 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.7 bits (182), Expect = 8.600e-11
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 18  MNVPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFD 77
           + VPKPEVP++P+   PELPKP +P+L  P LPE     LPKPT PELPKPTMPELPK  
Sbjct: 40  LEVPKPEVPELPKPTFPELPKPTMPELPKPVLPE-----LPKPTFPELPKPTMPELPKPV 99

Query: 78  LPKDPKPTVP 86
           LP+ PKPT+P
Sbjct: 100 LPELPKPTLP 104

[Close]

BLAST of Spo21920.1 vs. NCBI nr
Match: gi|731378790|ref|XP_010668273.1| (PREDICTED: proteoglycan 4-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.7 bits (182), Expect = 8.600e-11
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1

		  
Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLP 79
           +PKP VP++P+  +PE+PKP VP+L  PKLPE     LPKPT+PE+PKPTMPE+PK  LP
Sbjct: 186 IPKPTVPELPKPTLPEIPKPTVPELPKPKLPE-----LPKPTVPEVPKPTMPEVPKPALP 245

Query: 80  KDPKPTVP 86
           + PKPT+P
Sbjct: 246 EMPKPTMP 248

[Close]

BLAST of Spo21920.1 vs. NCBI nr
Match: gi|731357502|ref|XP_010690245.1| (PREDICTED: proteoglycan 4-like isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 74.3 bits (181), Expect = 1.100e-10
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1

		  
Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLP---KPTIPELPKPTMPELPKF 79
           +PKP VP++P+  VPE+PKP VP++  PKLPE+P   +P   KPT+PELPKPT+PE+PK 
Sbjct: 186 IPKPTVPELPKPTVPEIPKPTVPEVPKPKLPELPKPTVPEVHKPTMPELPKPTLPEMPKP 245

Query: 80  DLPKDPKPTVP 86
            LP+ PKP VP
Sbjct: 246 TLPELPKPAVP 256

[Close]

BLAST of Spo21920.1 vs. NCBI nr
Match: gi|802578032|ref|XP_012069314.1| (PREDICTED: periaxin-like [Jatropha curcas])

HSP 1 Score: 73.2 bits (178), Expect = 2.500e-10
Identity = 42/71 (59.15%), Postives = 53/71 (74.65%), Query Frame = 1

		  
Query: 18  MNVPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPG---HGLPKPTIPELPKPTMPELPKF 77
           + VP+PE+   PE+PELPKPE+P LE PK PE+P      LPKP +PELPKP +PELPK 
Sbjct: 67  LEVPEPEL---PEIPELPKPELPGLEVPKFPELPKPEVPELPKPEVPELPKPEVPELPKP 126

Query: 78  DLPKDPKPTVP 86
           ++P+ PKP VP
Sbjct: 127 EVPELPKPEVP 134

[Close]

BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVI3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_030290 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.100e-28
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 1

		  
Query: 20  VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 79
           VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD
Sbjct: 287 VPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLPKD 346

Query: 80  PKPTVP 86
           PKPTVP
Sbjct: 347 PKPTVP 352

[Close]

BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BU75_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g191590 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.000e-11
Identity = 45/70 (64.29%), Postives = 53/70 (75.71%), Query Frame = 1

		  
Query: 18  MNVPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFD 77
           + VPKPEVP++P+   PELPKP +P+L  P LPE     LPKPT PELPKPTMPELPK  
Sbjct: 40  LEVPKPEVPELPKPTFPELPKPTMPELPKPVLPE-----LPKPTFPELPKPTMPELPKPV 99

Query: 78  LPKDPKPTVP 86
           LP+ PKPT+P
Sbjct: 100 LPELPKPTLP 104

[Close]

BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B4K0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015530 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 6.000e-11
Identity = 42/68 (61.76%), Postives = 54/68 (79.41%), Query Frame = 1

		  
Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDLP 79
           +PKP VP++P+  +PE+PKP VP+L  PKLPE     LPKPT+PE+PKPTMPE+PK  LP
Sbjct: 186 IPKPTVPELPKPTLPEIPKPTVPELPKPKLPE-----LPKPTVPEVPKPTMPEVPKPALP 245

Query: 80  KDPKPTVP 86
           + PKPT+P
Sbjct: 246 EMPKPTMP 248

[Close]

BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJR2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212650 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 7.900e-11
Identity = 42/71 (59.15%), Postives = 55/71 (77.46%), Query Frame = 1

		  
Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHGLP---KPTIPELPKPTMPELPKF 79
           +PKP VP++P+  VPE+PKP VP++  PKLPE+P   +P   KPT+PELPKPT+PE+PK 
Sbjct: 186 IPKPTVPELPKPTVPEIPKPTVPEVPKPKLPELPKPTVPEVHKPTMPELPKPTLPEMPKP 245

Query: 80  DLPKDPKPTVP 86
            LP+ PKP VP
Sbjct: 246 TLPELPKPAVP 256

[Close]

BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BMJ2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g212660 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 3.900e-10
Identity = 41/71 (57.75%), Postives = 55/71 (77.46%), Query Frame = 1

		  
Query: 20  VPKPEVPKMPE--VPELPKPEVPKLEAPKLPEMPGHG---LPKPTIPELPKPTMPELPKF 79
           VPKP VP++P+  +PE+PKP VP++  P +PE+P      LPKPT+PE+PKPT+PE+PK 
Sbjct: 153 VPKPTVPELPKPTLPEIPKPTVPEIPKPTVPEIPKPTVPELPKPTLPEIPKPTVPEVPKP 212

Query: 80  DLPKDPKPTVP 86
            LP+ PKPTVP
Sbjct: 213 KLPELPKPTVP 223

[Close]

BLAST of Spo21920.1 vs. TAIR (Arabidopsis)
Match: AT5G09520.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 63.5 bits (153), Expect = 7.000e-11
Identity = 44/85 (51.76%), Postives = 51/85 (60.00%), Query Frame = 1

		  
Query: 13  GYNYFMNVPKPEVPKMPEVP--ELPK-PEVPKLEAPKLPEMPGHGLPK---------PTI 72
           G    +  PKPE+P  PE+P  E+PK PE PKLE PKLPE+P   +PK         PT 
Sbjct: 31  GARRLLEEPKPEIPTFPELPKPEMPKLPEFPKLELPKLPEIPKPEMPKLPEIQKPELPTF 90

Query: 73  PELPKPTMPELPKFDLPKDPKPTVP 86
           PELPK  MPE PKFD PK P+   P
Sbjct: 91  PELPK--MPEFPKFDFPKLPELPKP 113

[Close]

BLAST of Spo21920.1 vs. TAIR (Arabidopsis)
Match: AT5G09530.1 (hydroxyproline-rich glycoprotein family protein)

HSP 1 Score: 60.8 bits (146), Expect = 4.600e-10
Identity = 34/69 (49.28%), Postives = 51/69 (73.91%), Query Frame = 1

		  
Query: 17  FMNVPKPEVPKMPEVPELPKPEVPKLEAPKLPEMPGHGLPKPTIPELPKPTMPELPKFDL 76
           F  +PKPE+PKMPE+P+   P+VP+++ P+LP+MP   +PKP +P+ P+   P+LPKF  
Sbjct: 114 FPEIPKPELPKMPEIPKPELPKVPEIQKPELPKMP--EIPKPELPKFPEIPKPDLPKF-- 173

Query: 77  PKDPKPTVP 86
           P++ KP VP
Sbjct: 174 PENSKPEVP 178

The following BLAST results are available for this feature:

BLAST of Spo21920.1 vs. NCBI nr
BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
BLAST of Spo21920.1 vs. ExPASy Swiss-Prot
BLAST of Spo21920.1 vs. TAIR (Arabidopsis)

BLAST of Spo21920.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902232919\|gb\|KNA22847.1\|	1.0e-27	100.	hypothetical protein SOVF_0302...	[more]
gi\|731352933\|ref\|XP_010687801.1\|	8.6e-11	64.2	PREDICTED: proteoglycan 4-like...	[more]
gi\|731378790\|ref\|XP_010668273.1\|	8.6e-11	61.7	PREDICTED: proteoglycan 4-like...	[more]
gi\|731357502\|ref\|XP_010690245.1\|	1.1e-10	59.1	PREDICTED: proteoglycan 4-like...	[more]
gi\|802578032\|ref\|XP_012069314.1\|	2.5e-10	59.1	PREDICTED: periaxin-like [Jatr...	[more]

BLAST of Spo21920.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RVI3_SPIOL	7.1e-28	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BU75_BETVU	6.0e-11	64.2	Uncharacterized protein OS=Bet...	[more]
A0A0J8B4K0_BETVU	6.0e-11	61.7	Uncharacterized protein OS=Bet...	[more]
A0A0J8BJR2_BETVU	7.9e-11	59.1	Uncharacterized protein OS=Bet...	[more]
A0A0J8BMJ2_BETVU	3.9e-10	57.7	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo21920.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

BLAST of Spo21920.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT5G09520.1	7.0e-11	51.7	hydroxyproline-rich glycoprote...	[more]
AT5G09530.1	4.6e-10	49.2	hydroxyproline-rich glycoprote...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33088	FAMILY NOT NAMED	coord: 20..85 score: 4.7

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo15544	0.91	Barchart \| Table