Spo21946 (gene) | SpinachBase

Overview


Name	Spo21946
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	NAD(P)H-quinone oxidoreductase subunit 2, chloroplastic (1.6.5.-) (NAD(P)H dehydrogenase, subunit 2) (NADH-plastoquinone oxidoreductase subunit 2)
Location	SpoScf_00397 : 237334 .. 238399 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAACTAAGCCCTCTCGGGAACTCGCTTAAGAATAAGAACGAGGAATCTCATGTAAATACCATGCTATTCATGGAGATTCCGTAAATATTCCATTTCAAAAACAGAAACAATTGGTATTTTTTTGGAGATTAGATGCAGTTACTAATTCATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTGATTTTTCCAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCATAACAGCCCTGTTGTTCCGATGGAGAGAAGAACCTATGATTAGCTTTTCAGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTCTAACAGAGTTTCTGTTATTCATATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCGGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGAGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGACATGCAGAAGAGAAATGCTATTCCCACTCGGACCAAGACATAACTTTTACTTGTTCAAATAA

mRNA sequence

ATGGATCAACTAAGCCCTCTCGGGAACTCGCTTAAGAATAAGAACGAGGAATCTCATGTAAATACCATGCTATTCATGGAGATTCCTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCGGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGAGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGACATGCAGAAGAGAAATGCTATTCCCACTCGGACCAAGACATAACTTTTACTTGTTCAAATAA

Coding sequence (CDS)

ATGGATCAACTAAGCCCTCTCGGGAACTCGCTTAAGAATAAGAACGAGGAATCTCATGTAAATACCATGCTATTCATGGAGATTCCTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAATATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCATGGTTTCTCTTGGCTATATGGTTCATCCGGTGGAGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCGGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGAGAAATTCCTACCTCTCTATCTATCTCTGAGATGTTTGGATTTTTCAAAACTCCATGGACATGCAGAAGAGAAATGCTATTCCCACTCGGACCAAGACATAACTTTTACTTGTTCAAATAA

Protein sequence

MDQLSPLGNSLKNKNEESHVNTMLFMEIPLCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTPWTCRREMLFPLGPRHNFYLFK

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21946.1	Spo21946.1	mRNA

Homology

[Close]

BLAST of Spo21946.1 vs. NCBI nr
Match: gi|628819152|gb|AHY80585.1| (NADH-plastoquinone oxidoreductase subunit 2 (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 297.0 bits (759), Expect = 2.200e-77
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILV+GFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVYGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREMLFPLGPRHNFYLFK
Sbjct: 281 TPWTCRREMLFPLGPRHNFYLFK 303

[Close]

BLAST of Spo21946.1 vs. NCBI nr
Match: gi|225268|prf||1211235DD (NADH dehydrogenase 2-like ORF 180)

HSP 1 Score: 290.8 bits (743), Expect = 1.600e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 38  LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 97

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 98  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 157

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 158 TPWTCRREMLSPLGPRQNFYLFK 180

[Close]

BLAST of Spo21946.1 vs. NCBI nr
Match: gi|814071999|ref|YP_009123570.1| (NADH-plastoquinone oxidoreductase subunit 2 (plastid) [Physalis peruviana])

HSP 1 Score: 290.8 bits (743), Expect = 1.600e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 281 TPWTCRREMLSPLGPRQNFYLFK 303

[Close]

BLAST of Spo21946.1 vs. NCBI nr
Match: gi|1002165453|ref|YP_009235584.1| (NdhB (chloroplast) [Cynanchum wilfordii])

HSP 1 Score: 271.6 bits (693), Expect = 9.700e-70
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSIS+MFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISKMFGFFK 280

Query: 150 TPWTCRREMLFPLGP 165
           TPWTCRREML PL P
Sbjct: 281 TPWTCRREMLSPLSP 295

[Close]

BLAST of Spo21946.1 vs. NCBI nr
Match: gi|523582323|gb|AGQ50376.1| (NADH-plastoquinone oxidoreductase subunit 2 (chloroplast) [Rumex acetosa])

HSP 1 Score: 271.6 bits (693), Expect = 9.700e-70
Identity = 131/135 (97.04%), Postives = 132/135 (97.78%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVR+IP SLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVRKIPRSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGP 165
           TPWTCRREML PL P
Sbjct: 281 TPWTCRREMLSPLSP 295

[Close]

BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQY2_BETVU (NADH-plastoquinone oxidoreductase subunit 2 OS=Beta vulgaris subsp. vulgaris GN=ndhB PE=4 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.500e-77
Identity = 142/143 (99.30%), Postives = 143/143 (100.00%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILV+GFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVYGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREMLFPLGPRHNFYLFK
Sbjct: 281 TPWTCRREMLFPLGPRHNFYLFK 303

[Close]

BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A0D3RWC7_9SOLA (NADH-plastoquinone oxidoreductase subunit 2 OS=Iochroma calycinum GN=ndhB PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.100e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 281 TPWTCRREMLSPLGPRQNFYLFK 303

[Close]

BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A0C5C0I1_9SOLA (NdhB protein OS=Physalis peruviana GN=ndhB PE=4 SV=1)

HSP 1 Score: 290.8 bits (743), Expect = 1.100e-75
Identity = 140/143 (97.90%), Postives = 140/143 (97.90%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NFYLFK
Sbjct: 281 TPWTCRREMLSPLGPRQNFYLFK 303

[Close]

BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: M1B8G4_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400015298 PE=4 SV=1)

HSP 1 Score: 285.4 bits (729), Expect = 4.500e-74
Identity = 138/141 (97.87%), Postives = 138/141 (97.87%), Query Frame = 1

		  
Query: 32  SYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQ 91
           SYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQ
Sbjct: 83  SYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLINTQ 142

Query: 92  MYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTP 151
           MYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTP
Sbjct: 143 MYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFKTP 202

Query: 152 WTCRREMLFPLGPRHNFYLFK 173
           WTCRREML PLGPR NFYLFK
Sbjct: 203 WTCRREMLSPLGPRQNFYLFK 223

[Close]

BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Match: A0A0V0INN5_SOLCH (Putative NADH-plastoquinone oxidoreductase subunit 2-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 2.800e-71
Identity = 134/143 (93.71%), Postives = 136/143 (95.10%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGG+IELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGKIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLS AP HQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSLAPFHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFPLGPRHNFYLFK 173
           TPWTCRREML PLGPR NF L +
Sbjct: 281 TPWTCRREMLSPLGPRQNFLLLQ 303

[Close]

BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C1_COFAR (NAD(P)H-quinone oxidoreductase subunit 2 A, chloroplastic OS=Coffea arabica GN=ndhB1 PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.500e-70
Identity = 129/132 (97.73%), Postives = 130/132 (98.48%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREMLFP 162
           TPWTCRRE+L P
Sbjct: 281 TPWTCRREILSP 292

[Close]

BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_COFAR (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Coffea arabica GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.300e-69
Identity = 127/129 (98.45%), Postives = 128/129 (99.22%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 149
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEGVRFVREIPTSLSISEMFGFFK 280

Query: 150 TPWTCRREM 159
           TPWTCRRE+
Sbjct: 281 TPWTCRREI 289

[Close]

BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_GOSHI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Gossypium hirsutum GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.600e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_CARPA (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Carica papaya GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.600e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Match: NU2C2_VITVI (NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic OS=Vitis vinifera GN=ndhB2 PE=3 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.600e-51
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 161 LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 220

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG
Sbjct: 221 TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 259

[Close]

BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 197.2 bits (500), Expect = 8.200e-51
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKD+RSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 38  LCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 97

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLS APSHQWTPDVYEG
Sbjct: 98  TQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136

[Close]

BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATCG01250.1 (NADH-Ubiquinone/plastoquinone (complex I) protein)

HSP 1 Score: 197.2 bits (500), Expect = 8.200e-51
Identity = 96/99 (96.97%), Postives = 97/99 (97.98%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 89
           LCSYLLSGYTKKD+RSNEAT KYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN
Sbjct: 38  LCSYLLSGYTKKDIRSNEATMKYLLMGGASSSILVHGFSWLYGSSGGEIELQEIVNGLIN 97

Query: 90  TQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
           TQMYNSPGISIALIFITVGIGFKLS APSHQWTPDVYEG
Sbjct: 98  TQMYNSPGISIALIFITVGIGFKLSLAPSHQWTPDVYEG 136

[Close]

BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATMG00285.1 (NADH dehydrogenase 2A)

HSP 1 Score: 75.9 bits (185), Expect = 2.800e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGE--IELQEIVNGL 89
           LC Y+++   +K   S EA +KYL++G  SS IL+ G S +YGS+G     +L +I+ G 
Sbjct: 157 LCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGY 216

Query: 90  INTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
             T    S GI + ++ I VG  FK++  P H W PD+YEG
Sbjct: 217 EITGA-RSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYEG 256

[Close]

BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Match: ATMG01320.1 (NADH dehydrogenase 2B)

HSP 1 Score: 75.9 bits (185), Expect = 2.800e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1

		  
Query: 30  LCSYLLSGYTKKDVRSNEATTKYLLMGGASSSILVHGFSWLYGSSGGE--IELQEIVNGL 89
           LC Y+++   +K   S EA +KYL++G  SS IL+ G S +YGS+G     +L +I+ G 
Sbjct: 157 LCFYVIAASKRKSEFSTEAGSKYLILGAFSSGILLFGCSMIYGSTGATHFDQLAKILTGY 216

Query: 90  INTQMYNSPGISIALIFITVGIGFKLSPAPSHQWTPDVYEG 129
             T    S GI + ++ I VG  FK++  P H W PD+YEG
Sbjct: 217 EITGA-RSSGIFMGILSIAVGFLFKITAVPFHMWAPDIYEG 256

The following BLAST results are available for this feature:

BLAST of Spo21946.1 vs. NCBI nr
BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
BLAST of Spo21946.1 vs. TAIR (Arabidopsis)

BLAST of Spo21946.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
gi\|628819152\|gb\|AHY80585.1\|	2.2e-77	99.3	NADH-plastoquinone oxidoreduct...	[more]
gi\|225268\|prf\|\|1211235DD	1.6e-75	97.9	NADH dehydrogenase 2-like ORF ...	[more]
gi\|814071999\|ref\|YP_009123570.1\|	1.6e-75	97.9	NADH-plastoquinone oxidoreduct...	[more]
gi\|1002165453\|ref\|YP_009235584.1\|	9.7e-70	97.0	NdhB (chloroplast) [Cynanchum ...	[more]
gi\|523582323\|gb\|AGQ50376.1\|	9.7e-70	97.0	NADH-plastoquinone oxidoreduct...	[more]

BLAST of Spo21946.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
A0A023ZQY2_BETVU	1.5e-77	99.3	NADH-plastoquinone oxidoreduct...	[more]
A0A0D3RWC7_9SOLA	1.1e-75	97.9	NADH-plastoquinone oxidoreduct...	[more]
A0A0C5C0I1_9SOLA	1.1e-75	97.9	NdhB protein OS=Physalis peruv...	[more]
M1B8G4_SOLTU	4.5e-74	97.8	Uncharacterized protein OS=Sol...	[more]
A0A0V0INN5_SOLCH	2.8e-71	93.7	Putative NADH-plastoquinone ox...	[more]

BLAST of Spo21946.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5

Position :

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Match Name	E-value	Identity	Description
NU2C1_COFAR	1.5e-70	97.7	NAD(P)H-quinone oxidoreductase...	[more]
NU2C2_COFAR	1.3e-69	98.4	NAD(P)H-quinone oxidoreductase...	[more]
NU2C2_GOSHI	1.6e-51	100.	NAD(P)H-quinone oxidoreductase...	[more]
NU2C2_CARPA	1.6e-51	100.	NAD(P)H-quinone oxidoreductase...	[more]
NU2C2_VITVI	1.6e-51	100.	NAD(P)H-quinone oxidoreductase...	[more]

BLAST of Spo21946.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

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Match Name	E-value	Identity	Description
ATCG00890.1	8.2e-51	96.9	NADH-Ubiquinone/plastoquinone ...	[more]
ATCG01250.1	8.2e-51	96.9	NADH-Ubiquinone/plastoquinone ...	[more]
ATMG00285.1	2.8e-14	40.5	NADH dehydrogenase 2A	[more]
ATMG01320.1	2.8e-14	40.5	NADH dehydrogenase 2B	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 24..128 score: 1.9
None	No IPR available	PANTHER	PTHR22773	NADH DEHYDROGENASE	coord: 30..128 score: 2.5
None	No IPR available	PANTHER	PTHR22773:SF86	NAD(P)H-QUINONE OXIDOREDUCTASE SUBUNIT 2 A, CHLOROPLASTIC-RELATED	coord: 30..128 score: 2.5

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0009769	photosynthesis, light harvesting in photosystem II
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0046487	glyoxylate metabolic process
biological_process	GO:0034968	histone lysine methylation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006554	lysine catabolic process
biological_process	GO:0009853	photorespiration
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0009767	photosynthetic electron transport chain
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0019253	reductive pentose-phosphate cycle
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0015986	ATP synthesis coupled proton transport
biological_process	GO:0006119	oxidative phosphorylation
biological_process	GO:0006744	ubiquinone biosynthetic process
biological_process	GO:0006412	translation
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:1902600	proton transmembrane transport
biological_process	GO:0015979	photosynthesis
cellular_component	GO:0009573	chloroplast ribulose bisphosphate carboxylase complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0009522	photosystem I
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0010287	plastoglobule
cellular_component	GO:0045261	proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component	GO:0030076	light-harvesting complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0046933	proton-transporting ATP synthase activity, rotational mechanism
molecular_function	GO:0046961	proton-transporting ATPase activity, rotational mechanism
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0008777	acetylornithine deacetylase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0030785	[ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function	GO:0016984	ribulose-bisphosphate carboxylase activity
molecular_function	GO:0004497	monooxygenase activity
molecular_function	GO:0018024	histone-lysine N-methyltransferase activity
molecular_function	GO:0009055	electron transfer activity
molecular_function	GO:0051539	4 iron, 4 sulfur cluster binding
molecular_function	GO:0016491	oxidoreductase activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0045157	electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo06201	0.76	Barchart \| Table
Spo04277	0.76	Barchart \| Table
Spo18044	0.75	Barchart \| Table
Spo25538	0.75	Barchart \| Table
Spo05875	0.74	Barchart \| Table
Spo01748	0.74	Barchart \| Table
Spo02851	0.74	Barchart \| Table
Spo24707	0.73	Barchart \| Table
Spo17010	0.73	Barchart \| Table
Spo25555	0.72	Barchart \| Table
Spo16490	0.72	Barchart \| Table
Spo26127	0.71	Barchart \| Table
Spo06200	0.71	Barchart \| Table
Spo08440	0.71	Barchart \| Table
Spo10627	0.71	Barchart \| Table
Spo24708	0.71	Barchart \| Table
Spo00626	0.70	Barchart \| Table
Spo26126	0.70	Barchart \| Table
Spo25004	0.69	Barchart \| Table
Spo24717	0.69	Barchart \| Table
Spo04278	0.68	Barchart \| Table
Spo22445	0.68	Barchart \| Table
Spo09413	0.68	Barchart \| Table
Spo19560	0.66	Barchart \| Table
Spo19561	0.66	Barchart \| Table
Spo11904	0.66	Barchart \| Table
Spo24718	0.66	Barchart \| Table
Spo24719	0.66	Barchart \| Table
Spo25537	0.65	Barchart \| Table
Spo22572	0.65	Barchart \| Table
Spo16485	0.65	Barchart \| Table