Spo21966 (gene) | SpinachBase

Overview


Name	Spo21966
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Arabinogalactan protein
Location	SpoScf_00297 : 173611 .. 177439 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCCCCACCCGGTCAAGAGTACTCCATATAAAATTATAAATACGTCTAATCAATAAAATGCGGTATTTCAAACTGCAAAGAGGTAAATTGATCTGTCCAGAAGCTGGTGGAATCTCCCCAAAACAACCCAAATTGTTCATCGAATCAACGTACTCCGTATTATCACAAGAGAGAATAATCATCAAAAAATTAGAATACAGAAAAAATGGCTCAAAACCCTCAATTGTTTCCTAATGGTATGCCTGTCCCTTTTTATGCCGAATTGTTTGTGTTGGCTAGAGATGGCGTTGAGTTTGAGGTCGATAAGATTCCTGGGTTAGCATATTCTCTCTATATTCCTTGCTTAATTTTTCGTATTTGTTGCTTTCTGACAAATTTGATTGTTTTTCTTTCGAATTTTCAGTTTTCTTCTAATTTGATTATTTGGGTTTATTTTTTTAAATTAGGGTTTGGTTTATTTGTTGCAAATTGCTGTGATTATGGCATCAAATTGAGCATTTTCATTCAAATTTTCGCTCAATTTCTTGTTTAATCGTGCGAGGTTTTGTGTTATTCTGTTTAGGTATCGGTTTTTATGTTGCGAATATGCATGATCACATTGGTTTACCCATTTTTCTTTGGTAATTTAACGGACTATATCCCCTTTCTTCTGGGTTTGGTATTGAATTGGGAGTTTGATTGGTCTCTCGTCAGCAGAGTTGTTTATTGTTTGAAGAGAATTCAAAATTTTAATTTTCTAAACAGTGGACTTTCTTCACTTTTGGAGGATCAAAATTGGATTAAGCAATAGGAGATAAAATATGATAGGTAAACAGAAGGGGTTGGATGAAGAGTTAGTCGAGTTTACTTGTGTGCTTTCAGCTCTATATTCGGGGGCGATTTTGAAGGTGATTCGCTTGAGCTCCAATGTGGCATTATTCCAAAGTCATATTTTAGGAGATATCCTTCAGAAGCATTTCTGGCTAGCAAAATATAAGTAGTACATTGGTGTTTCAGTTTGTATATGGATTTCCTTGAAAGACTTTGTGAGTTTTTGTTATTCTTAGCCTTATAAGAAGAATATTTTAGGTTCACACGTCTAAGTTCTAACTTTAGGATCTTAGTCATGTTAGTAACCAAACCATTAATGCAGTGGAGTGATAACTTAATATAGTCGTCCTGTTTGGATTGTAACCTTCTCTCCAGAACTCGTGTTTTGAGCTGTTTGTTCCACCTACAGTAGTACAGTGTACCATTATTATTATTCGACTTAGACATTTACAAACAATCATGTACCACAATCAAGTACCTAGGGGCATCCGGTAGAGCTAAAGAACAACGCACTCATTTGCATATGTGCAGGTTCATAATCAGGTGTTTGTGTCATTAGTTTCTGAGTGCCTTCGTGATATTAGTAACTAAATTTAATCTTATAATCCTGCCTTCAAACTTCTTTTCTGGACATCTGAAAGAATTTGTTATGGCTTTAAGCTATGAATCAGCATAGTTTAGACATCAAAATGAGCAGATTACAAGGAAGAAGGTGATGCTTTTGATTGATGATCTGGAATTACAGCAAAATGTAAAGATGTTCAAGCATCCGAGAGGCTTGGTTTTCTCCCAATTGAACTCTTAAAAGTTCAATACAATTCTCATTAGTATTCAACATAACTTCCCCAATTCACTCTATAATATGCTCTATATGTGTAGTGATAAACTCCATAGCTTATTCCCTTAACTATCCATAACTAAGTTATTACCTAGAGTCCCCCNCCCCCACACACACACAATATCAGTTCATTGCATTTTTAACGGGTGCTACTGTATGTAATAGTCTTGGCAGTTGGCTCTTAGGTACAAAAACTTATGAAGATCCCCTCACTTTATAATAGAAGATGTATCCTTCTGGCAAAAAATAATAATAATCATACTAGTGATGTCTGGAAAAAATTCATGTTTTCTAAAACTGTAGTGCATCATTTTAGTGGAAGGCACAGCTGTTAGAAAATTTTAGTAAAACCATGTTAAATCCTTCAATAATAAGGTCTAAGAAAGTGCGACAATTACTTTTAGGTGGAGGGAGTAACATTTATTCACCAAGTTTTTATCTGTACATGCACAGAACGGAAAGAGGTAGATGGAATTATATTTTGATGTTTGTTATGTAGGATTTGCTAAATTGATGGATAAACAACGAACATAGCTTTAGGGAAAAGTTATCCAGCTTTAAAATTGTAGGCTCTTTTGATTCTGCAACTATTACTCCGTGTTCATGTTGTTAACAATATTGATTATGCATTATTGTTCGTCTCACTTGTGTTGTACTCCTGGCTTCTAGGAGCGGGAAAGTGAAGGCTAAGGGGACTGTCTACTTGTCAAATGTGCGCATGGTATTTGTCGCAAGCAAGCCCGTTGGGAATTTTTATGCATTTGATATGCCTCTGGTATGCATCTTTTCCATTGTCAATTATTCGTGTTGCATTCTCCCTTTCTAGCTTCATCCGAAAAAACAACACAAACTTACTTTCTGTAAGTGTCCAGCAATGTCTCTTATCTTTCTGTAAGACATGCCAAAGCAATGTCTTGTAAGTTGTCACAGTAGACTGTCTTTGGTACAGCTTTGCTATACCAATTTCAAACCCCTTTTCTTCCGCCCCCTTAGAGATTTTTGTAGTGGATTCAGTGCCAAGTGTTTCTCCCTTGGTAAACTAAAGTAACTTATGCTATTAACGTATATGCAAAAAGAAGCATTCTCTTTTTGATTTGGCATTTAAAAGAATATGACTTATCCCACGAAAAAGCAGGAGACTTATTATTTTTTGTATTTTATACTCCGTATTTTGCTGGTTTACACTTTTACCCCATGGTGATGGTCTACATTGCCTTTCTGCAGTTGCATGTTCATAGTGAGAAATTCAACCAACCAATATTTCATTGCAACAACATTTCAGGACATGTGGAACCAGTGAGTTTTCAAACTATCAACTTCCACGATGGTTACACTCTTTGGAGTTAGGAGTTTTGGACATTCCTTGATATTTGAATGTTGAAACTTGCAGGTTATTCCTGAAAATGAGAATAGGGCTCTATACTCAACCCACTCATTCAAGATTTTGTTCAAGGAGGGCGGTTGTGGTACCTTTATCCCCCTGTTTTTTAACTTAATCAATTCTGTAAGGCGGTACAATCAACAGGCTGCACCTGCCCCAGAGCCTCGTGTTGATCCTCTACGTGCAGCACAAACTCCTGTGGATGAAATGATGAGACATGCGTAAGTATATTGTCAATTTCTAAGCTTTTAAGATAACTGAAGGACTTTGTGGTTGTTTACAAAATGGGAACTTCATTTGTGCAGGTATGTTGATCCAAATGATCCTACAAAGATCTTTTTGCAGCAACCTACACCGGAGTCAAACCTGAGGCGGCGTACATACCATTCACAAGGCGACAACACCATGTAGTACTACCTTGTTTCTTCTGTTGTGGAAATCATACCAAAGTAAAGAAAAGAACAATATGTTTTCAGTTTGTATCCATAGATAAGATGCTCTCCTGGCTTGTCAATACCTTTTTTATACATATTTTTATTTTCATCTTTTTGGTGTCTGAACCTTGTATTATACTCAGATTGTAGGCTCTAATATAATAAAAGTTGTCTTGTATATTCTGTTGTACGAGTTTTTAGTTGTTTGGATATGAACTGGTGATTCAAATAAATATGATCTTCTCTACTAATTGAAGACGCCGAGAAGTTGCGTCTGCTTGGCATCAGATAACACAAGTCTGCGCATACGCATGAGGTTGTATGCTTCTCAAACACTAAAAACAGTACTTATATTACAAATTAC

mRNA sequence

CCCGCCCCACCCGGTCAAGAGTACTCCATATAAAATTATAAATACGTCTAATCAATAAAATGCGGTATTTCAAACTGCAAAGAGGTAAATTGATCTGTCCAGAAGCTGGTGGAATCTCCCCAAAACAACCCAAATTGTTCATCGAATCAACGTACTCCGTATTATCACAAGAGAGAATAATCATCAAAAAATTAGAATACAGAAAAAATGGCTCAAAACCCTCAATTGTTTCCTAATGGTATGCCTGTCCCTTTTTATGCCGAATTGTTTGTGTTGGCTAGAGATGGCGTTGAGTTTGAGGTCGATAAGATTCCTGGGAGCGGGAAAGTGAAGGCTAAGGGGACTGTCTACTTGTCAAATGTGCGCATGGTATTTGTCGCAAGCAAGCCCGTTGGGAATTTTTATGCATTTGATATGCCTCTGTTGCATGTTCATAGTGAGAAATTCAACCAACCAATATTTCATTGCAACAACATTTCAGGACATGTGGAACCAGTTATTCCTGAAAATGAGAATAGGGCTCTATACTCAACCCACTCATTCAAGATTTTGTTCAAGGAGGGCGGTTGTGGTACCTTTATCCCCCTGTTTTTTAACTTAATCAATTCTGTAAGGCGGTACAATCAACAGGCTGCACCTGCCCCAGAGCCTCGTGTTGATCCTCTACGTGCAGCACAAACTCCTGTGGATGAAATGATGAGACATGCGTATGTTGATCCAAATGATCCTACAAAGATCTTTTTGCAGCAACCTACACCGGAGTCAAACCTGAGGCGGCGTACATACCATTCACAAGGCGACAACACCATGTAGTACTACCTTGTTTCTTCTGTTGTGGAAATCATACCAAAGTAAAGAAAAGAACAATATGTTTTCAGTTTGTATCCATAGATAAGATGCTCTCCTGGCTTGTCAATACCTTTTTTATACATATTTTTATTTTCATCTTTTTGGTGTCTGAACCTTGTATTATACTCAGATTGTAGGCTCTAATATAATAAAAGTTGTCTTGTATATTCTGTTGTACGAGTTTTTAGTTGTTTGGATATGAACTGGTGATTCAAATAAATATGATCTTCTCTACTAATTGAAGACGCCGAGAAGTTGCGTCTGCTTGGCATCAGATAACACAAGTCTGCGCATACGCATGAGGTTGTATGCTTCTCAAACACTAAAAACAGTACTTATATTACAAATTAC

Coding sequence (CDS)

ATGGCTCAAAACCCTCAATTGTTTCCTAATGGTATGCCTGTCCCTTTTTATGCCGAATTGTTTGTGTTGGCTAGAGATGGCGTTGAGTTTGAGGTCGATAAGATTCCTGGGAGCGGGAAAGTGAAGGCTAAGGGGACTGTCTACTTGTCAAATGTGCGCATGGTATTTGTCGCAAGCAAGCCCGTTGGGAATTTTTATGCATTTGATATGCCTCTGTTGCATGTTCATAGTGAGAAATTCAACCAACCAATATTTCATTGCAACAACATTTCAGGACATGTGGAACCAGTTATTCCTGAAAATGAGAATAGGGCTCTATACTCAACCCACTCATTCAAGATTTTGTTCAAGGAGGGCGGTTGTGGTACCTTTATCCCCCTGTTTTTTAACTTAATCAATTCTGTAAGGCGGTACAATCAACAGGCTGCACCTGCCCCAGAGCCTCGTGTTGATCCTCTACGTGCAGCACAAACTCCTGTGGATGAAATGATGAGACATGCGTATGTTGATCCAAATGATCCTACAAAGATCTTTTTGCAGCAACCTACACCGGAGTCAAACCTGAGGCGGCGTACATACCATTCACAAGGCGACAACACCATGTAG

Protein sequence

MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASKPVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGGCGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQQPTPESNLRRRTYHSQGDNTM

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21966.1	Spo21966.1	mRNA

Homology

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BLAST of Spo21966.1 vs. NCBI nr
Match: gi|902239196|gb|KNA25497.1| (hypothetical protein SOVF_006340 [Spinacia oleracea])

HSP 1 Score: 421.4 bits (1082), Expect = 8.900e-115
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK
Sbjct: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG
Sbjct: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ
Sbjct: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180

Query: 181 QPTPESNLRRRTYHSQGDNTM 202
           QPTPESNLRRRTYHSQGDNTM
Sbjct: 181 QPTPESNLRRRTYHSQGDNTM 201

[Close]

BLAST of Spo21966.1 vs. NCBI nr
Match: gi|731346263|ref|XP_010684364.1| (PREDICTED: uncharacterized protein LOC104898932 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 389.8 bits (1000), Expect = 2.900e-105
Identity = 184/201 (91.54%), Postives = 191/201 (95.02%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MAQNPQLF NGMPVPFY ELFVLARDGVEFEVDKI GSGKVKAKGT+YLSNVRMVFVASK
Sbjct: 1   MAQNPQLFSNGMPVPFYGELFVLARDGVEFEVDKISGSGKVKAKGTIYLSNVRMVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           P GNFYAFDMPLLHVH+EKFNQPIF CNNISG+VEPV+PE ENRALYSTHSFKILFKEGG
Sbjct: 61  PAGNFYAFDMPLLHVHAEKFNQPIFQCNNISGNVEPVVPETENRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTFIPLFFNLINSVR+YNQ  AP  EPRVDPLRAAQTPVDEMMRHAYVDPNDP+KI+LQ
Sbjct: 121 CGTFIPLFFNLINSVRQYNQHVAPVSEPRVDPLRAAQTPVDEMMRHAYVDPNDPSKIYLQ 180

Query: 181 QPTPESNLRRRTYHSQGDNTM 202
           QPTPESNLRRRTYHSQGDNTM
Sbjct: 181 QPTPESNLRRRTYHSQGDNTM 201

[Close]

BLAST of Spo21966.1 vs. NCBI nr
Match: gi|743819723|ref|XP_011020947.1| (PREDICTED: UPF0664 stress-induced protein C29B12.11c isoform X1 [Populus euphratica])

HSP 1 Score: 354.0 bits (907), Expect = 1.700e-94
Identity = 167/202 (82.67%), Postives = 182/202 (90.10%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MA NPQL+PNGMPVPF  ELFVLARDGVEFEVDKIPG GKVKAKGT+YLSN+RMVFVAS+
Sbjct: 1   MALNPQLYPNGMPVPFENELFVLARDGVEFEVDKIPGCGKVKAKGTIYLSNIRMVFVASQ 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVGNFYAFDMPLL +H EKFNQPIFHCNNISG VEPV+PE ENRALYSTHSFKILFKEGG
Sbjct: 61  PVGNFYAFDMPLLFIHEEKFNQPIFHCNNISGFVEPVVPETENRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTF+PLF NLI++VR+YNQQ   AP P +DPL+AAQTPVDEMMRHAYVDPNDPT+IFLQ
Sbjct: 121 CGTFVPLFLNLISAVRQYNQQMNSAPRPWIDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQ 180

Query: 181 QPTPESNLRRRTYH-SQGDNTM 202
           QPTP+S LRRRTY  S  + TM
Sbjct: 181 QPTPQSELRRRTYQPSSAERTM 202

[Close]

BLAST of Spo21966.1 vs. NCBI nr
Match: gi|641842245|gb|KDO61152.1| (hypothetical protein CISIN_1g028854mg [Citrus sinensis])

HSP 1 Score: 348.2 bits (892), Expect = 9.600e-93
Identity = 165/196 (84.18%), Postives = 179/196 (91.33%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MA NPQLFPN MPVPF  ELFVLARDGVEF VDKIPG+ +VKA+GTVYLSN+R+VFVASK
Sbjct: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVGNF AFDMPLL++H EKFNQPIFHCNNISG VEPVIPENE+RALYSTHSFKILFKEGG
Sbjct: 61  PVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTF+PLF NLI+SVR+YN+Q+    EPRVDPL+AAQTPVDEMMRHAYVDPNDPTKIFLQ
Sbjct: 121 CGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQ 180

Query: 181 QPTPESNLRRRTYHSQ 197
           QP  ES LRRRTYHSQ
Sbjct: 181 QPNSESQLRRRTYHSQ 196

[Close]

BLAST of Spo21966.1 vs. NCBI nr
Match: gi|567855533|ref|XP_006420886.1| (hypothetical protein CICLE_v10005917mg [Citrus clementina])

HSP 1 Score: 348.2 bits (892), Expect = 9.600e-93
Identity = 165/196 (84.18%), Postives = 179/196 (91.33%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MA NPQLFPN MPVPF  ELFVLARDGVEF VDKIPG+ +VKA+GTVYLSN+R+VFVASK
Sbjct: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRIVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVGNF AFDMPLL++H EKFNQPIFHCNNISG VEPVIPENE+RALYSTHSFKILFKEGG
Sbjct: 61  PVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTF+PLF NLI+SVR+YN+Q+    EPRVDPL+AAQTPVDEMMRHAYVDPNDPTKIFLQ
Sbjct: 121 CGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQ 180

Query: 181 QPTPESNLRRRTYHSQ 197
           QP  ES LRRRTYHSQ
Sbjct: 181 QPNSESQLRRRTYHSQ 196

[Close]

BLAST of Spo21966.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S2X9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_006340 PE=4 SV=1)

HSP 1 Score: 421.4 bits (1082), Expect = 6.200e-115
Identity = 201/201 (100.00%), Postives = 201/201 (100.00%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK
Sbjct: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG
Sbjct: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ
Sbjct: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180

Query: 181 QPTPESNLRRRTYHSQGDNTM 202
           QPTPESNLRRRTYHSQGDNTM
Sbjct: 181 QPTPESNLRRRTYHSQGDNTM 201

[Close]

BLAST of Spo21966.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BXX7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g163760 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.000e-105
Identity = 184/201 (91.54%), Postives = 191/201 (95.02%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MAQNPQLF NGMPVPFY ELFVLARDGVEFEVDKI GSGKVKAKGT+YLSNVRMVFVASK
Sbjct: 1   MAQNPQLFSNGMPVPFYGELFVLARDGVEFEVDKISGSGKVKAKGTIYLSNVRMVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           P GNFYAFDMPLLHVH+EKFNQPIF CNNISG+VEPV+PE ENRALYSTHSFKILFKEGG
Sbjct: 61  PAGNFYAFDMPLLHVHAEKFNQPIFQCNNISGNVEPVVPETENRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTFIPLFFNLINSVR+YNQ  AP  EPRVDPLRAAQTPVDEMMRHAYVDPNDP+KI+LQ
Sbjct: 121 CGTFIPLFFNLINSVRQYNQHVAPVSEPRVDPLRAAQTPVDEMMRHAYVDPNDPSKIYLQ 180

Query: 181 QPTPESNLRRRTYHSQGDNTM 202
           QPTPESNLRRRTYHSQGDNTM
Sbjct: 181 QPTPESNLRRRTYHSQGDNTM 201

[Close]

BLAST of Spo21966.1 vs. UniProtKB/TrEMBL
Match: V4SB17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10005917mg PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.700e-93
Identity = 165/196 (84.18%), Postives = 179/196 (91.33%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MA NPQLFPN MPVPF  ELFVLARDGVEF VDKIPG+ +VKA+GTVYLSN+R+VFVASK
Sbjct: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRIVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVGNF AFDMPLL++H EKFNQPIFHCNNISG VEPVIPENE+RALYSTHSFKILFKEGG
Sbjct: 61  PVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTF+PLF NLI+SVR+YN+Q+    EPRVDPL+AAQTPVDEMMRHAYVDPNDPTKIFLQ
Sbjct: 121 CGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQ 180

Query: 181 QPTPESNLRRRTYHSQ 197
           QP  ES LRRRTYHSQ
Sbjct: 181 QPNSESQLRRRTYHSQ 196

[Close]

BLAST of Spo21966.1 vs. UniProtKB/TrEMBL
Match: A0A067FCI8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028854mg PE=4 SV=1)

HSP 1 Score: 348.2 bits (892), Expect = 6.700e-93
Identity = 165/196 (84.18%), Postives = 179/196 (91.33%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MA NPQLFPN MPVPF  ELFVLARDGVEF VDKIPG+ +VKA+GTVYLSN+R+VFVASK
Sbjct: 1   MALNPQLFPNWMPVPFTNELFVLARDGVEFHVDKIPGTNQVKARGTVYLSNIRVVFVASK 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVGNF AFDMPLL++H EKFNQPIFHCNNISG VEPVIPENE+RALYSTHSFKILFKEGG
Sbjct: 61  PVGNFVAFDMPLLYIHDEKFNQPIFHCNNISGFVEPVIPENEHRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTF+PLF NLI+SVR+YN+Q+    EPRVDPL+AAQTPVDEMMRHAYVDPNDPTKIFLQ
Sbjct: 121 CGTFVPLFLNLISSVRQYNRQSNVGTEPRVDPLQAAQTPVDEMMRHAYVDPNDPTKIFLQ 180

Query: 181 QPTPESNLRRRTYHSQ 197
           QP  ES LRRRTYHSQ
Sbjct: 181 QPNSESQLRRRTYHSQ 196

[Close]

BLAST of Spo21966.1 vs. UniProtKB/TrEMBL
Match: R9W0R7_CENER (Putative arabinogalactan protein 5 OS=Centaurium erythraea GN=AGP5 PE=2 SV=1)

HSP 1 Score: 347.4 bits (890), Expect = 1.100e-92
Identity = 160/196 (81.63%), Postives = 179/196 (91.33%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGSGKVKAKGTVYLSNVRMVFVASK 60
           MA NPQLF NG+P+PF +E+FVL RDGVEFE+DKIPGSG VKAKGT+YLSNVRMVFVA +
Sbjct: 1   MALNPQLFSNGLPIPFVSEMFVLTRDGVEFEIDKIPGSGHVKAKGTIYLSNVRMVFVAKQ 60

Query: 61  PVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKEGG 120
           PVG F+AFD+PLL+V +EKFNQPIFHCNNISG V+PV+P+ ENRALYSTHSFKILFKEGG
Sbjct: 61  PVGXFFAFDLPLLYVRAEKFNQPIFHCNNISGFVDPVVPDGENRALYSTHSFKILFKEGG 120

Query: 121 CGTFIPLFFNLINSVRRYNQQAAPAPEPRVDPLRAAQTPVDEMMRHAYVDPNDPTKIFLQ 180
           CGTFIPLFFNLI SVRRYNQ  + APEPRVDPL+AAQTPVDEMMRHAYVDPNDPT+IFLQ
Sbjct: 121 CGTFIPLFFNLIESVRRYNQHMSGAPEPRVDPLQAAQTPVDEMMRHAYVDPNDPTRIFLQ 180

Query: 181 QPTPESNLRRRTYHSQ 197
           QPTPES +RRRTY  +
Sbjct: 181 QPTPESQMRRRTYRPE 196

[Close]

BLAST of Spo21966.1 vs. TAIR (Arabidopsis)
Match: AT5G11680.1 (FUNCTIONS IN: molecular_function unknown)

HSP 1 Score: 328.2 bits (840), Expect = 3.600e-90
Identity = 157/202 (77.72%), Postives = 175/202 (86.63%), Query Frame = 1


		  
Query: 1   MAQNPQLFPNGMPVPFYAELFVLARDGVEFEVDKIPGS--GKVKAKGTVYLSNVRMVFVA 60
           MA NPQL PNGMPVPF  E+FVL RDGVEFEVDKIPG   G VKAKG +YLSN+RMVFV+
Sbjct: 1   MALNPQLLPNGMPVPFVNEMFVLVRDGVEFEVDKIPGGHGGHVKAKGVIYLSNIRMVFVS 60

Query: 61  SKPVGNFYAFDMPLLHVHSEKFNQPIFHCNNISGHVEPVIPENENRALYSTHSFKILFKE 120
           SKPV NF AFDMPLL++H+EKFNQPIFHCNNI+G VEPV+PENE+RALYSTHSFKILFKE
Sbjct: 61  SKPVDNFVAFDMPLLYIHAEKFNQPIFHCNNIAGQVEPVVPENEHRALYSTHSFKILFKE 120

Query: 121 GGCGTFIPLFFNLINSVRRYNQQAAPAPE-----PRVDPLRAAQTPVDEMMRHAYVDPND 180
           GGCGTF+PLF NLI+SVR+YN+Q   A E     P VDPL+AAQTPVDEMMRHAYVDPND
Sbjct: 121 GGCGTFVPLFLNLISSVRQYNRQMQQAAEAAAAAPHVDPLQAAQTPVDEMMRHAYVDPND 180

Query: 181 PTKIFLQQPTPESNLRRRTYHS 196
           PT+I+LQQP+ ES LRRR YHS
Sbjct: 181 PTRIYLQQPSGESQLRRRAYHS 202

The following BLAST results are available for this feature:

BLAST of Spo21966.1 vs. NCBI nr
BLAST of Spo21966.1 vs. UniProtKB/TrEMBL
BLAST of Spo21966.1 vs. ExPASy Swiss-Prot
BLAST of Spo21966.1 vs. TAIR (Arabidopsis)

BLAST of Spo21966.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902239196\|gb\|KNA25497.1\|	8.9e-115	100.	hypothetical protein SOVF_0063...	[more]
gi\|731346263\|ref\|XP_010684364.1\|	2.9e-105	91.5	PREDICTED: uncharacterized pro...	[more]
gi\|743819723\|ref\|XP_011020947.1\|	1.7e-94	82.6	PREDICTED: UPF0664 stress-indu...	[more]
gi\|641842245\|gb\|KDO61152.1\|	9.6e-93	84.1	hypothetical protein CISIN_1g0...	[more]
gi\|567855533\|ref\|XP_006420886.1\|	9.6e-93	84.1	hypothetical protein CICLE_v10...	[more]

BLAST of Spo21966.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S2X9_SPIOL	6.2e-115	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8BXX7_BETVU	2.0e-105	91.5	Uncharacterized protein OS=Bet...	[more]
V4SB17_9ROSI	6.7e-93	84.1	Uncharacterized protein OS=Cit...	[more]
A0A067FCI8_CITSI	6.7e-93	84.1	Uncharacterized protein OS=Cit...	[more]
R9W0R7_CENER	1.1e-92	81.6	Putative arabinogalactan prote...	[more]

BLAST of Spo21966.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo21966.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT5G11680.1	3.6e-90	77.7	FUNCTIONS IN: molecular_functi...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011993	PH domain-like	unknown	SSF50729	PH domain-like	coord: 6..128 score: 5.29
None	No IPR available	PANTHER	PTHR31606	FAMILY NOT NAMED	coord: 2..199 score: 4.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0006950	response to stress
biological_process	GO:0007033	vacuole organization
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0006887	exocytosis
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0030048	actin filament-based movement
biological_process	GO:0000041	transition metal ion transport
biological_process	GO:0048831	regulation of shoot system development
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010029	regulation of seed germination
biological_process	GO:0080036	regulation of cytokinin-activated signaling pathway
biological_process	GO:0031537	regulation of anthocyanin metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0000160	phosphorelay signal transduction system
biological_process	GO:0015698	inorganic anion transport
biological_process	GO:0009553	embryo sac development
biological_process	GO:0006906	vesicle fusion
biological_process	GO:0009414	response to water deprivation
biological_process	GO:0051301	cell division
biological_process	GO:0006281	DNA repair
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0007064	mitotic sister chromatid cohesion
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0006979	response to oxidative stress
biological_process	GO:0009987	cellular process
biological_process	GO:0006952	defense response
biological_process	GO:0006972	hyperosmotic response
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0010951	negative regulation of endopeptidase activity
biological_process	GO:0009409	response to cold
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0006457	protein folding
biological_process	GO:0016049	cell growth
biological_process	GO:0009827	plant-type cell wall modification
biological_process	GO:0006821	chloride transport
biological_process	GO:0016558	protein import into peroxisome matrix
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0001101	response to acid chemical
biological_process	GO:0009725	response to hormone
biological_process	GO:1901700	response to oxygen-containing compound
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0034220	ion transmembrane transport
biological_process	GO:0009860	pollen tube growth
biological_process	GO:0044070	regulation of anion transport
biological_process	GO:0009627	systemic acquired resistance
biological_process	GO:0009723	response to ethylene
biological_process	GO:0034976	response to endoplasmic reticulum stress
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0009817	defense response to fungus, incompatible interaction
biological_process	GO:0035556	intracellular signal transduction
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0006522	alanine metabolic process
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0045892	negative regulation of transcription, DNA-templated
biological_process	GO:0009266	response to temperature stimulus
biological_process	GO:0019530	taurine metabolic process
biological_process	GO:0006536	glutamate metabolic process
biological_process	GO:0019482	beta-alanine metabolic process
biological_process	GO:0006531	aspartate metabolic process
cellular_component	GO:0046862	chromoplast membrane
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0070469	respiratory chain
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0005576	extracellular region
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005768	endosome
cellular_component	GO:0005622	intracellular
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031201	SNARE complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0032588	trans-Golgi network membrane
cellular_component	GO:0005773	vacuole
cellular_component	GO:0000785	chromatin
cellular_component	GO:0008278	cohesin complex
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0046983	protein dimerization activity
molecular_function	GO:0004351	glutamate decarboxylase activity
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003830	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity
molecular_function	GO:0009916	alternative oxidase activity
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0015035	protein disulfide oxidoreductase activity
molecular_function	GO:0030170	pyridoxal phosphate binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0050897	cobalt ion binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0016881	acid-amino acid ligase activity
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003743	translation initiation factor activity
molecular_function	GO:0000149	SNARE binding
molecular_function	GO:0005484	SNAP receptor activity
molecular_function	GO:0004869	cysteine-type endopeptidase inhibitor activity
molecular_function	GO:0005509	calcium ion binding
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0043424	protein histidine kinase binding
molecular_function	GO:0009927	histidine phosphotransfer kinase activity
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008430	selenium binding
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0005544	calcium-dependent phospholipid binding
molecular_function	GO:0005247	voltage-gated chloride channel activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14830	0.73	Barchart \| Table
Spo26703	0.73	Barchart \| Table
Spo13640	0.72	Barchart \| Table
Spo23626	0.72	Barchart \| Table
Spo13592	0.72	Barchart \| Table
Spo25866	0.71	Barchart \| Table
Spo02464	0.71	Barchart \| Table
Spo11854	0.70	Barchart \| Table
Spo18618	0.70	Barchart \| Table
Spo02893	0.70	Barchart \| Table
Spo17197	0.70	Barchart \| Table
Spo05602	0.69	Barchart \| Table
Spo11960	0.69	Barchart \| Table
Spo00314	0.69	Barchart \| Table
Spo22921	0.69	Barchart \| Table
Spo19069	0.69	Barchart \| Table
Spo11860	0.69	Barchart \| Table
Spo04300	0.69	Barchart \| Table
Spo17345	0.68	Barchart \| Table
Spo25731	0.68	Barchart \| Table
Spo05490	0.68	Barchart \| Table
Spo14537	0.67	Barchart \| Table
Spo15949	0.67	Barchart \| Table
Spo01276	0.67	Barchart \| Table
Spo08009	0.67	Barchart \| Table
Spo04615	0.67	Barchart \| Table
Spo13450	0.67	Barchart \| Table
Spo25324	0.67	Barchart \| Table
Spo24509	0.66	Barchart \| Table
Spo02890	0.66	Barchart \| Table
Spo03191	0.66	Barchart \| Table
Spo04116	0.66	Barchart \| Table
Spo05728	0.66	Barchart \| Table
Spo05777	0.66	Barchart \| Table
Spo05817	0.66	Barchart \| Table
Spo09904	0.66	Barchart \| Table
Spo10449	0.66	Barchart \| Table
Spo13614	0.66	Barchart \| Table
Spo23044	0.66	Barchart \| Table
Spo23463	0.66	Barchart \| Table
Spo24133	0.66	Barchart \| Table
Spo18575	0.65	Barchart \| Table
Spo26790	0.65	Barchart \| Table
Spo17419	0.65	Barchart \| Table
Spo14667	0.65	Barchart \| Table
Spo11573	0.65	Barchart \| Table
Spo25796	0.65	Barchart \| Table
Spo18873	0.65	Barchart \| Table
Spo10086	0.65	Barchart \| Table
Spo05915	0.65	Barchart \| Table