Spo21973 (gene) | SpinachBase

Overview


Name	Spo21973
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Lectin
Location	SpoScf_00297 : 455055 .. 455888 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTCACCAAGTCGCCCAGGTTCGAACTTGCTTAACACGCTATTATTTCTCGTTCTTAATGCATACTGTTTCATTCATATATTCATCCACTCCTAATACTCTAATAGTACACCTAATTATATGCATAATGTTATTAACGTTGTTTTTGTCTCGACTCGCAGAAGCATATGGTTGAACAATTCGGACCTTATGGTTCTCAGTGTCCCGAAAACTACAGCTTTAAACTTCAAGAAGGTGAAAGTATCAAAGAAGTCATCGTAAGATATGGCTACATTGTTGATGCTATTGGCTTCGTCGTAGCCAAGCCTTGTGGAGGTACCTACACCAAGATGTTTGGTGGCAACGATTGCCGTGCCAAGGAGTCAAGGGTTAGTGCTATATATGATTGAGGACCTATATATGGTATACTTCATTTTTTTTCCGTTTTATTCCTCTAACGTTTTCACCTTTACATAGATTGTACTCAAGTGTGGTGAAAAGATAACCCAGATTTCTGGCACCTACGGAAACTATAAGTACCAGAACAATCAATGCACCATTGCTACATTGAAGATCCACACCAACTTATGCCCAACTGGTTATGGACCATATGGACAAGGAAATGGAGTCGATTGCCCACGAGCTTTTGCATCGCCATGCCCAATTGACGGCCCTGTTGTTGGAGTGTTTGGAAGGCACAACAACTACCTCGAGTCTATTGGAATTTTCGTCCAGAAGAAGGTACAAAATGTTATTGCAAAATTTTGAAACATATTTGGTTTAATTAAGCTAATATGTACTCGGCTAATTTGTTTCTATGTAAATTATTGATCAGGATTGCCCATGCGCTTAA

mRNA sequence

ATGGCTCACCAAGTCGCCCAGAAGCATATGGTTGAACAATTCGGACCTTATGGTTCTCAGTGTCCCGAAAACTACAGCTTTAAACTTCAAGAAGGTGAAAGTATCAAAGAAGTCATCGTAAGATATGGCTACATTGTTGATGCTATTGGCTTCGTCGTAGCCAAGCCTTGTGGAGGTACCTACACCAAGATGTTTGGTGGCAACGATTGCCGTGCCAAGGAGTCAAGGATTGTACTCAAGTGTGGTGAAAAGATAACCCAGATTTCTGGCACCTACGGAAACTATAAGTACCAGAACAATCAATGCACCATTGCTACATTGAAGATCCACACCAACTTATGCCCAACTGGTTATGGACCATATGGACAAGGAAATGGAGTCGATTGCCCACGAGCTTTTGCATCGCCATGCCCAATTGACGGCCCTGTTGTTGGAGTGTTTGGAAGGCACAACAACTACCTCGAGTCTATTGGAATTTTCGTCCAGAAGAAGGATTGCCCATGCGCTTAA

Coding sequence (CDS)

ATGGCTCACCAAGTCGCCCAGAAGCATATGGTTGAACAATTCGGACCTTATGGTTCTCAGTGTCCCGAAAACTACAGCTTTAAACTTCAAGAAGGTGAAAGTATCAAAGAAGTCATCGTAAGATATGGCTACATTGTTGATGCTATTGGCTTCGTCGTAGCCAAGCCTTGTGGAGGTACCTACACCAAGATGTTTGGTGGCAACGATTGCCGTGCCAAGGAGTCAAGGATTGTACTCAAGTGTGGTGAAAAGATAACCCAGATTTCTGGCACCTACGGAAACTATAAGTACCAGAACAATCAATGCACCATTGCTACATTGAAGATCCACACCAACTTATGCCCAACTGGTTATGGACCATATGGACAAGGAAATGGAGTCGATTGCCCACGAGCTTTTGCATCGCCATGCCCAATTGACGGCCCTGTTGTTGGAGTGTTTGGAAGGCACAACAACTACCTCGAGTCTATTGGAATTTTCGTCCAGAAGAAGGATTGCCCATGCGCTTAA

Protein sequence

MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo21973.1	Spo21973.1	mRNA

Homology

[Close]

BLAST of Spo21973.1 vs. NCBI nr
Match: gi|902223762|gb|KNA19569.1| (hypothetical protein SOVF_060350 isoform B [Spinacia oleracea])

HSP 1 Score: 368.6 bits (945), Expect = 5.800e-99
Identity = 167/169 (98.82%), Postives = 169/169 (100.00%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MAHQVAQKHMVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVRYGYIVDAIGFVVAKPCGGT
Sbjct: 1   MAHQVAQKHMVEQYGPYGSQCPENYSFKLQEGETIKEVIVRYGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP
Sbjct: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA
Sbjct: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. NCBI nr
Match: gi|902239194|gb|KNA25495.1| (hypothetical protein SOVF_006320 [Spinacia oleracea])

HSP 1 Score: 363.6 bits (932), Expect = 1.900e-97
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MA QVAQKHMVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVRYGYIVDAIGFVVAKPCGGT
Sbjct: 1   MAQQVAQKHMVEQYGPYGSQCPENYSFKLQEGETIKEVIVRYGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGGNDCRAKESRI LKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP
Sbjct: 61  YTKMFGGNDCRAKESRIALKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLES+GIFVQKKDCPCA
Sbjct: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESVGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. NCBI nr
Match: gi|902170609|gb|KNA07866.1| (hypothetical protein SOVF_167930 isoform A [Spinacia oleracea])

HSP 1 Score: 361.3 bits (926), Expect = 9.200e-97
Identity = 162/169 (95.86%), Postives = 168/169 (99.41%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MAHQVAQKHMVEQ+GPYGSQCPENYSFKLQEGESIKEVI+R+GYIVDAIGFVVAKPCGGT
Sbjct: 1   MAHQVAQKHMVEQYGPYGSQCPENYSFKLQEGESIKEVIIRHGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCP+G+GP
Sbjct: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPSGHGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQG GVDCPRAFASPCPIDGPVVGVFGRHNNYLES+GIFVQKKDCPCA
Sbjct: 121 YGQGKGVDCPRAFASPCPIDGPVVGVFGRHNNYLESVGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. NCBI nr
Match: gi|902223761|gb|KNA19568.1| (hypothetical protein SOVF_060350 isoform A [Spinacia oleracea])

HSP 1 Score: 350.5 bits (898), Expect = 1.600e-93
Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 1

		  
Query: 10  MVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGGND 69
           MVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGGND
Sbjct: 1   MVEQYGPYGSQCPENYSFKLQEGETIKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGGND 60

Query: 70  CRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDC 129
           CRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDC
Sbjct: 61  CRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDC 120

Query: 130 PRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           PRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA
Sbjct: 121 PRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 160

[Close]

BLAST of Spo21973.1 vs. NCBI nr
Match: gi|902146535|gb|KNA05074.1| (hypothetical protein SOVF_193740 [Spinacia oleracea])

HSP 1 Score: 350.1 bits (897), Expect = 2.100e-93
Identity = 158/169 (93.49%), Postives = 163/169 (96.45%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MA QVAQKHMVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVR+GYIVDAIGFVVAKPCGGT
Sbjct: 1   MAQQVAQKHMVEQYGPYGSQCPENYSFKLQEGETIKEVIVRHGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGG  C AKESRI LKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCP+GYGP
Sbjct: 61  YTKMFGGISCHAKESRIALKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPSGYGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQG GVDCPRAFASPCPIDGPVVGVFGRHNNYLES+GIFVQKKDCPCA
Sbjct: 121 YGQGKGVDCPRAFASPCPIDGPVVGVFGRHNNYLESVGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RKW0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_060350 PE=4 SV=1)

HSP 1 Score: 368.6 bits (945), Expect = 4.000e-99
Identity = 167/169 (98.82%), Postives = 169/169 (100.00%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MAHQVAQKHMVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVRYGYIVDAIGFVVAKPCGGT
Sbjct: 1   MAHQVAQKHMVEQYGPYGSQCPENYSFKLQEGETIKEVIVRYGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP
Sbjct: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA
Sbjct: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S169_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_006320 PE=4 SV=1)

HSP 1 Score: 363.6 bits (932), Expect = 1.300e-97
Identity = 164/169 (97.04%), Postives = 167/169 (98.82%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MA QVAQKHMVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVRYGYIVDAIGFVVAKPCGGT
Sbjct: 1   MAQQVAQKHMVEQYGPYGSQCPENYSFKLQEGETIKEVIVRYGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGGNDCRAKESRI LKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP
Sbjct: 61  YTKMFGGNDCRAKESRIALKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLES+GIFVQKKDCPCA
Sbjct: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESVGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QMR1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_167930 PE=4 SV=1)

HSP 1 Score: 361.3 bits (926), Expect = 6.400e-97
Identity = 162/169 (95.86%), Postives = 168/169 (99.41%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MAHQVAQKHMVEQ+GPYGSQCPENYSFKLQEGESIKEVI+R+GYIVDAIGFVVAKPCGGT
Sbjct: 1   MAHQVAQKHMVEQYGPYGSQCPENYSFKLQEGESIKEVIIRHGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCP+G+GP
Sbjct: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPSGHGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQG GVDCPRAFASPCPIDGPVVGVFGRHNNYLES+GIFVQKKDCPCA
Sbjct: 121 YGQGKGVDCPRAFASPCPIDGPVVGVFGRHNNYLESVGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RJA5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_060350 PE=4 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 1.100e-93
Identity = 158/160 (98.75%), Postives = 160/160 (100.00%), Query Frame = 1

		  
Query: 10  MVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGGND 69
           MVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGGND
Sbjct: 1   MVEQYGPYGSQCPENYSFKLQEGETIKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGGND 60

Query: 70  CRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDC 129
           CRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDC
Sbjct: 61  CRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDC 120

Query: 130 PRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           PRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA
Sbjct: 121 PRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 160

[Close]

BLAST of Spo21973.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QCS4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_193740 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 1.500e-93
Identity = 158/169 (93.49%), Postives = 163/169 (96.45%), Query Frame = 1

		  
Query: 1   MAHQVAQKHMVEQFGPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGT 60
           MA QVAQKHMVEQ+GPYGSQCPENYSFKLQEGE+IKEVIVR+GYIVDAIGFVVAKPCGGT
Sbjct: 1   MAQQVAQKHMVEQYGPYGSQCPENYSFKLQEGETIKEVIVRHGYIVDAIGFVVAKPCGGT 60

Query: 61  YTKMFGGNDCRAKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGP 120
           YTKMFGG  C AKESRI LKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCP+GYGP
Sbjct: 61  YTKMFGGISCHAKESRIALKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPSGYGP 120

Query: 121 YGQGNGVDCPRAFASPCPIDGPVVGVFGRHNNYLESIGIFVQKKDCPCA 170
           YGQG GVDCPRAFASPCPIDGPVVGVFGRHNNYLES+GIFVQKKDCPCA
Sbjct: 121 YGQGKGVDCPRAFASPCPIDGPVVGVFGRHNNYLESVGIFVQKKDCPCA 169

[Close]

BLAST of Spo21973.1 vs. ExPASy Swiss-Prot
Match: LEC_PARPC (Mannose/glucose-specific lectin (Fragment) OS=Parkia platycephala PE=1 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.300e-13
Identity = 51/151 (33.77%), Postives = 79/151 (52.32%), Query Frame = 1

		  
Query: 15  GPYGSQCPENYSFKLQEGESIKEVIVRYGYIVDAIGFVVAKPCGGTYTKMFGG---NDCR 74
           GP+G    + +S+   EG  I ++I+  G  + ++ F   K   G  +  FGG    D  
Sbjct: 304 GPWGGSGGDPWSYTANEG--INQIIIYAGSNIKSVAF---KDTSGLDSATFGGVNPKDTG 363

Query: 75  AKESRIVLKCGEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDCPR 134
            K +  +    E +T ISGTYG YK+++   TI +L   TNL    YGP+G+ +      
Sbjct: 364 EKNTVSINWPSEYLTSISGTYGQYKFKDVFTTITSLSFTTNLAT--YGPFGKASAT---- 423

Query: 135 AFASPCPIDGPVVGVFGRHNNYLESIGIFVQ 163
           +F+ P   +  VVG  GR  +YL++IGIFV+
Sbjct: 424 SFSIPIH-NNMVVGFHGRAGDYLDAIGIFVK 442

[Close]

BLAST of Spo21973.1 vs. ExPASy Swiss-Prot
Match: GOS9_ORYSI (Protein GOS9 OS=Oryza sativa subsp. indica GN=GOS9 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.700e-7
Identity = 49/137 (35.77%), Postives = 64/137 (46.72%), Query Frame = 1

		  
Query: 34  SIKEVIVRYGYIVDAIGFV---------VAKPCGGTYTKMFGGNDCRAKESRIVLKCGEK 93
           S+K V +R G  +DAI F          +A P GG      GGN      + I L   E 
Sbjct: 27  SLKSVTIRSGAAIDAIAFTYIGTDGKEHLAGPWGGG-----GGNP-----TTITLGSQEF 86

Query: 94  ITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDCPRAFASPCPIDGPVV 153
           +  ISGT+ N         +  LKI TN+  T Y  +GQG G     AF+ P    G VV
Sbjct: 87  VKGISGTFTN--------VVTNLKIVTNV--TTYN-FGQGGGT----AFSLPLQ-SGSVV 137

Query: 154 GVFGRHNNYLESIGIFV 162
           G FGR    ++SIG++V
Sbjct: 147 GFFGRAGALVDSIGVYV 137

[Close]

BLAST of Spo21973.1 vs. ExPASy Swiss-Prot
Match: GOS9_ORYSJ (Protein GOS9 OS=Oryza sativa subsp. japonica GN=GOS9 PE=2 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 6.700e-7
Identity = 49/137 (35.77%), Postives = 64/137 (46.72%), Query Frame = 1

		  
Query: 34  SIKEVIVRYGYIVDAIGFV---------VAKPCGGTYTKMFGGNDCRAKESRIVLKCGEK 93
           S+K V +R G  +DAI F          +A P GG      GGN      + I L   E 
Sbjct: 27  SLKSVTIRSGAAIDAIAFTYIGTDGKEHLAGPWGGG-----GGNP-----TTITLGSQEF 86

Query: 94  ITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDCPRAFASPCPIDGPVV 153
           +  ISGT+ N         +  LKI TN+  T Y  +GQG G     AF+ P    G VV
Sbjct: 87  VKGISGTFTN--------VVTNLKIVTNV--TTYN-FGQGGGT----AFSLPLQ-SGSVV 137

Query: 154 GVFGRHNNYLESIGIFV 162
           G FGR    ++SIG++V
Sbjct: 147 GFFGRAGALVDSIGVYV 137

[Close]

BLAST of Spo21973.1 vs. TAIR (Arabidopsis)
Match: AT1G19715.3 (Mannose-binding lectin superfamily protein)

HSP 1 Score: 47.8 bits (112), Expect = 7.900e-6
Identity = 39/150 (26.00%), Postives = 66/150 (44.00%), Query Frame = 1

		  
Query: 15  GPYGSQCPENYSFKLQEGESIKEVIVRYGY-IVDAIGFVVAKPCGGTYTKMFGGNDCRAK 74
           GP+G    + +   +  G  IK++ V  G   + +I     +     ++   GG+     
Sbjct: 442 GPWGGDGGQAWDDGVFSG--IKQIFVTRGNDAITSIQIEYDRNGQSVWSIKHGGDSNGVA 501

Query: 75  ESRIVLKC-GEKITQISGTYGNYKYQNNQCTIATLKIHTNLCPTGYGPYGQGNGVDCPRA 134
             RI  +   E IT ISG YG     +    + +L  +T+     YGPYG+  G      
Sbjct: 502 THRIKFEYPDESITCISGYYGPLNNSDRYNVVKSLSFYTSR--GRYGPYGEETGT----- 561

Query: 135 FASPCPIDGPVVGVFGRHNNYLESIGIFVQ 163
           F +     G V+G  GR + +L++IG+ +Q
Sbjct: 562 FFTSTTTQGKVLGFHGRSSFHLDAIGVHMQ 582

The following BLAST results are available for this feature:

BLAST of Spo21973.1 vs. NCBI nr
BLAST of Spo21973.1 vs. UniProtKB/TrEMBL
BLAST of Spo21973.1 vs. ExPASy Swiss-Prot
BLAST of Spo21973.1 vs. TAIR (Arabidopsis)

BLAST of Spo21973.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902223762\|gb\|KNA19569.1\|	5.8e-99	98.8	hypothetical protein SOVF_0603...	[more]
gi\|902239194\|gb\|KNA25495.1\|	1.9e-97	97.0	hypothetical protein SOVF_0063...	[more]
gi\|902170609\|gb\|KNA07866.1\|	9.2e-97	95.8	hypothetical protein SOVF_1679...	[more]
gi\|902223761\|gb\|KNA19568.1\|	1.6e-93	98.7	hypothetical protein SOVF_0603...	[more]
gi\|902146535\|gb\|KNA05074.1\|	2.1e-93	93.4	hypothetical protein SOVF_1937...	[more]

BLAST of Spo21973.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9RKW0_SPIOL	4.0e-99	98.8	Uncharacterized protein OS=Spi...	[more]
A0A0K9S169_SPIOL	1.3e-97	97.0	Uncharacterized protein OS=Spi...	[more]
A0A0K9QMR1_SPIOL	6.4e-97	95.8	Uncharacterized protein OS=Spi...	[more]
A0A0K9RJA5_SPIOL	1.1e-93	98.7	Uncharacterized protein OS=Spi...	[more]
A0A0K9QCS4_SPIOL	1.5e-93	93.4	Uncharacterized protein OS=Spi...	[more]

BLAST of Spo21973.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3

Position :

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Match Name	E-value	Identity	Description
LEC_PARPC	1.3e-13	33.7	Mannose/glucose-specific lecti...	[more]
GOS9_ORYSI	6.7e-7	35.7	Protein GOS9 OS=Oryza sativa s...	[more]
GOS9_ORYSJ	6.7e-7	35.7	Protein GOS9 OS=Oryza sativa s...	[more]

BLAST of Spo21973.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

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Match Name	E-value	Identity	Description
AT1G19715.3	7.9e-6	26.0	Mannose-binding lectin superfa...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001229	Jacalin-like lectin domain	GENE3D	2.100.10.30		coord: 10..162 score: 9.5
IPR001229	Jacalin-like lectin domain	PFAM	PF01419	Jacalin	coord: 36..161 score: 8.
IPR001229	Jacalin-like lectin domain	PROFILE	PS51752	JACALIN_LECTIN	coord: 11..163 score: 14
IPR001229	Jacalin-like lectin domain	unknown	SSF51101	Mannose-binding lectins	coord: 9..161 score: 1.19

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0048825	cotyledon development
biological_process	GO:0006452	translational frameshifting
biological_process	GO:0006446	regulation of translational initiation
biological_process	GO:0045905	positive regulation of translational termination
biological_process	GO:0045901	positive regulation of translational elongation
biological_process	GO:0006396	RNA processing
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010182	sugar mediated signaling pathway
biological_process	GO:0009863	salicylic acid mediated signaling pathway
biological_process	GO:0016246	RNA interference
biological_process	GO:0009611	response to wounding
biological_process	GO:0000184	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
biological_process	GO:0048571	long-day photoperiodism
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0042742	defense response to bacterium
biological_process	GO:0009744	response to sucrose
biological_process	GO:0008152	metabolic process
biological_process	GO:0007178	transmembrane receptor protein serine/threonine kinase signaling pathway
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0000186	activation of MAPKK activity
biological_process	GO:0006464	cellular protein modification process
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005622	intracellular
cellular_component	GO:0000785	chromatin
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0000932	P-body
cellular_component	GO:0005886	plasma membrane
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008641	ubiquitin-like modifier activating enzyme activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0043022	ribosome binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0004386	helicase activity
molecular_function	GO:0003712	transcription coregulator activity
molecular_function	GO:0008026	ATP-dependent helicase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004709	MAP kinase kinase kinase activity
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003743	translation initiation factor activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21968	0.92	Barchart \| Table
Spo21969	0.89	Barchart \| Table
Spo21984	0.86	Barchart \| Table
Spo21985	0.82	Barchart \| Table
Spo21982	0.81	Barchart \| Table
Spo21082	0.76	Barchart \| Table
Spo19394	0.73	Barchart \| Table
Spo06873	0.72	Barchart \| Table
Spo22139	0.71	Barchart \| Table
Spo02991	0.70	Barchart \| Table
Spo08380	0.69	Barchart \| Table
Spo09711	0.68	Barchart \| Table
Spo04114	0.68	Barchart \| Table
Spo02470	0.68	Barchart \| Table
Spo24839	0.68	Barchart \| Table
Spo23496	0.67	Barchart \| Table
Spo24373	0.67	Barchart \| Table
Spo24001	0.67	Barchart \| Table
Spo20252	0.67	Barchart \| Table
Spo21077	0.67	Barchart \| Table
Spo23966	0.67	Barchart \| Table
Spo26272	0.66	Barchart \| Table
Spo01128	0.66	Barchart \| Table
Spo04409	0.65	Barchart \| Table
Spo02105	0.65	Barchart \| Table
Spo05883	0.65	Barchart \| Table