Spo22020 (gene)

Overview
NameSpo22020
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 112597524 .. 112599343 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATTACGGAAGATAAGGTCAGGTCATCATGCAAATGCAGATGCAGAGTCAGATAACCACTATGCAGATGACTGGCCTGCAATATTAAGGTACATATCATTGTCCTTGTGCTTTTAGGGCATTGTTCTAACTTCTAAGTCTCACATTGGTAAGTCAATTTATTATGAGGAAATGTTTATGTGGTTGATTGTTTTGTGTTTGTCATATATTGTCCTTTTTAACAGGCTTATATCTTTACAAGAGTCTAATTGAGAATAAAGTTGATAAATCCTGCTGGGTCTTTCGGCCTTTGCAACATGTAGCTGGGTTTGTTAAGCTTCAAATTAAGTTTTCGGACCTCCACAACTGCACTACAGCTCTAGTCTTTAGTCTCTAGTGGTATGGAAGGCTTGTACTTGTTGAAATACCCACACGCTCACATCACTAGTGGCTAGATCATGAATATTTTTTTTGTCTCCACTGTAATTTTCACTTTTTAATGAAACAATAACCGAGTACAGTTTGTTTTTAGTCTAATTCCACTGTTATTTCACCCTTATTTTTCACCTACTGTGATATTTTAAAAATCTGTTGCAACCTACATAACCGTCATACGCACTGAAACCCATTAGATTCCCAGAGTACGATAAATATACTGCTGTAGGCCTTTGGTTTGGCCGCGCCTACCTTTAACACCTCGAAGAAAACACCCTGTAAATTATGTCCCTAAAAAGAGAACCCTGCTTACGAGGAATCTCTGTTGCCACTAGTCCAGCTGCTGTTTTAACAAGTGTCGAGTAGGTGGGTCCAACTGTTTGTTTCAGAAACATGAGAGCTAGTGAGCTATGATTAAGGGTTCTATGAATCTCGGACCTCGGAGTTTGTATCACGTAAGAGATGATGGTGGACAACTGACAGTCCTGCGTAACCTTTCTTGACATGCAGACTCCTGCAAACTGTCAACAAACTGAAGGGGAGACTTTGCTGGTTTGCATTGAGTTTCCCCTGTGTGCTTATCCTCAATCCTCTCCTTCCGAAACACACTTGTTTAAAATACAAATTTATAGGACACTCCACCCAATAGGGAACTTGGTCCTATCCAAAACCAGAGAAGGATTCACACGCCGTCCCTTGACTCCTAGCTAGTCCTACCCTCTTTTCCTCTGCAAAAGCCAAGTTATATAATATTACCTATAAGTCCTTTTTCTGCAGATAATTAGTTATATAATATTACCTGTAAGTCCTTTTTCTGCAGATAATTATATACCATCCTATGTTACTCGAACCCTTCATTTACTTTAAAGATCTATTGACATGGATACAGGCAGAACATTCCAGCTTTTCCTGTTTTGCTAAAATCAAGGTAAATTTTCACAATATAGCCGGGTCAGATATTTGTGCACCAGACACGCCCGTGTTTTGGGTACCTTAGTTAAAATAGCATACTTCCTTCCCTCTTTTATTATTTCAAGATGAACTTAATTAAGAAGATCCCACATACCTACATTTTTTGTTTATACATAAGTGACAAAATATTGTCATGGAACTAAGTATTAAAGAACGGAGAAAGTAGTTTTTAGTCTAGGTATTTATGGATTATGTCAGTTTGAAAAAATAAATCAGTTTGCCAAGTGTGGATGTTATATGGAGCAGGGAGATGTCAAAGAGACACGATGAACAGGTTTACGCTGACAGCTATCGAACCATATTTCACTGTAGACACGTATTAAGGAAAGAACAAAGTTCAATTTTCCCACTCATTTTATCAGTCCTCACCAGTTTTGCAACACACTATAAATAACAGAGTTACCCCAGTAGTTTCCAGGAGTACAGCTTAG

mRNA sequence

ATGACATTACGGAAGATAAGGTCAGGTCATCATGCAAATGCAGATGCAGAGTCAGATAACCACTATGCAGATGACTGGCCTGCAATATTAAGTTTGCCAAGTGTGGATGTTATATGGAGCAGGGAGATGTCAAAGAGACACGATGAACAGTCCTCACCAGTTTTGCAACACACTATAAATAACAGAGTTACCCCAGTAGTTTCCAGGAGTACAGCTTAG

Coding sequence (CDS)

ATGACATTACGGAAGATAAGGTCAGGTCATCATGCAAATGCAGATGCAGAGTCAGATAACCACTATGCAGATGACTGGCCTGCAATATTAAGTTTGCCAAGTGTGGATGTTATATGGAGCAGGGAGATGTCAAAGAGACACGATGAACAGTCCTCACCAGTTTTGCAACACACTATAAATAACAGAGTTACCCCAGTAGTTTCCAGGAGTACAGCTTAG

Protein sequence

MTLRKIRSGHHANADAESDNHYADDWPAILSLPSVDVIWSREMSKRHDEQSSPVLQHTINNRVTPVVSRSTA
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo22020.1Spo22020.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo22020.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo22020.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo22020.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo22020.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015031 protein transport
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006457 protein folding
biological_process GO:0006449 regulation of translational termination
biological_process GO:0043488 regulation of mRNA stability
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0045036 protein targeting to chloroplast
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016226 iron-sulfur cluster assembly
biological_process GO:0042793 plastid transcription
biological_process GO:0006470 protein dephosphorylation
cellular_component GO:0016607 nuclear speck
cellular_component GO:0031965 nuclear membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0018444 translation release factor complex
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
molecular_function GO:0003677 DNA binding
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0003747 translation release factor activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0016829 lyase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
RNA-Seq Expression