Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCGGCACTGTAGTCACTAAGAAAAAGGGCCTAACGGCTAGAAATGCCTAAAGTTGAATTTTCAAAAGCACTATAGTTTAAACATTAAATATATAAAAAGGAACCGGCGCTCAATATATTCTTTCTCAACGGGCATTCTTTCTCTAACAAAACCTAATTTTCTGAAATCCTTTTTTCTAATTTCTCCAAGAAAAAGTGTGAGAAATGGCGAGCAACATAGGAATGATGGATTCCGCGTACTTCGTCGGAAGATCTGAAATACTTTCGTGGATCAATTCCACCCTCCATCTCAATCTCTCCAAAGTCGAAGAGGTTACTCCTCTTTTCCCCTTCTTTTGATTATTCTTATTTAATTCAATACAATCGCTAAATCAAAATTGATGGGTAATTTTCAGGCAGCTTCAGGGGCAGTGCAGTGTCAATTGATGGACGCCGCCCACCCAGGGACGGTGCCAATGCACAAGGTCAATTTCGAGGCGAAGAACGAGTACGATATGATCCAGAATTACAAGGTTCTTCAAGATGTCTTCAATAAGCTCAAGATCACTAAGGTTCTCTTCAATTAATTTTGTTTTCTTTTCTGATTTCGTCTATTGTTCATTTATTGATTTTCTTTGGTTTTTTTTCCGGGGATGTTGAATTCAGCATATAGAAGTTAACAAACTCATAAAAGGGAGGCCATTGGATAATCTGGAGTTTATGCAATGGATGAAGAAATATTTTGATTCTGTTAATGGTGGTCTCCACAGGTAGTGAATCTCAATTTCTCTTTATTTTCGGAAAATAGGTTTGTTTTTAGAAATTAATCATTATTTGTGTGATTTTTATTTTTGTATTTCATATTCAAGCTGTCCTAATTAAAACGTACTTATTTCAATTTGGAGTTTTGGGATTTGGGTTGTTTTTATGTTGTTGAATTAATCATACTTGATTTTCGGAAATTAGGTTTAACTTTCAGAAATTACTCAATTTTTTTTTAAAATAATTTGTAAGTTGTTTCAGTGGTTAATTTGGTTTCGTATTATGTTCATGAAGTCTTTACCAAAATGTATGTCAATATGCTTGTTTTCTTCTTTGCTGCTCCTTGTGAAGGATTTGCTGTACAAGTGCGCACATATGTATAATCTTCTAAATATTGGAAGTAATTTGACTGGCAGCTCGATTTTTGGTGCTATTTGTGGTAAATTGGAATTTCTGTGTGTTAAGTTTGCTGATAAAGGGGCAAATGAAGAGACATGAGTTTTCCTTCGTCCCAAAATGATAGTATTGCAAATTTGTTAAAATGTGACCTATTGTTTAGTGTGGAAAGTAGTTAAACAAACGCTTCATTGCATATGTCTGAATTCCATACTAATGTTAAAATGCTGTTTGTTCTTATGAATGATAGTTACAATCCTGTAGAAAGGAGAGAGAGCAGGAAAGGTGGAAAAGAAATGGTTAGGAAATCAGTAAACCTCCAAGCTTCCAACAAACCAATCAGTTCTACCAACAAGGCTCATTCATCTCACAACAACCGCCGAGCTGATGTGTGTTCTGCTAACACTAAGAATCACTCTTTTAAAGCTGTGAAACCCAGTTCTGCTGCTGAATCTATATATGAAGAACAGGTAATTGTCAGTATATGTCTCAAAGATTGTGCATTTTTTAACATCTTTGTACCTGAATCTAATCCTACACTGACTGAGCAGATTACCGAGTTGAAGTTATCAGTTGACAGTCTTGAGAAAGAGCGCGATTTTTATTTCTCAAAGTTGAGGGATATCGAGATGTTGTGTCAAACCCCAGAGATAGAAAATTCACCGGTATGCCTTGTATTTGTGTTCTAAGTTACTTGAAAGAATGCAATATAAAGTTTTACATTTTTCTCTTCTTCTATAGATTGTGGCAGCAATGCAGAAGATACTATATGCTACAGATGATGAAACATCTGTGGTGGCTGAAGCACAAGCCATGATGTCACAGCACATAAAGCTTTTGAGTCCTATCGTCGAGGTCTCAGAAGATAGTGTAATGGTTGAAAATCAGAAGCGAAAAAGCATTGATCTCGACAGTCCTGCAAACGGAAAACAGCCCCAGAGGCAAAGACTTTCTGATGTTTCCAATATCCAATGCAGTGGTTCTCCTCTTATTACCTTTTAGAGAAGTTTAAATGTTGCAATACTTTTGGTGTTTCTTGTGAACTAATAAATACTATGTTGAAAACTCGAGCATTCTATAACTTGTGGTTTGCTCGTATGTGTGTACTACAAGCTGTTTGTATTAAGGCAACTATATTAGCCATCTATATATCTTTATGAGTTGTATTGGTTTAGGAACAAGGAGAAATAGGAAATGTCAATATGACAAGAAATGATAAGGAACTAGTGAACCTTCAAAATCCTTCAAGCAAAAAGGGATTTTACTGTACTCTCTCAGCAGTCAATCAATGACTTGTTACTGTGTTGATACTTCAGAACATGCAGAATTTGCTTCCCTA TTCGGCACTGTAGTCACTAAGAAAAAGGGCCTAACGGCTAGAAATGCCTAAAGTTGAATTTTCAAAAGCACTATAGTTTAAACATTAAATATATAAAAAGGAACCGGCGCTCAATATATTCTTTCTCAACGGGCATTCTTTCTCTAACAAAACCTAATTTTCTGAAATCCTTTTTTCTAATTTCTCCAAGAAAAAGTGTGAGAAATGGCGAGCAACATAGGAATGATGGATTCCGCGTACTTCGTCGGAAGATCTGAAATACTTTCGTGGATCAATTCCACCCTCCATCTCAATCTCTCCAAAGTCGAAGAGGCAGCTTCAGGGGCAGTGCAGTGTCAATTGATGGACGCCGCCCACCCAGGGACGGTGCCAATGCACAAGGTCAATTTCGAGGCGAAGAACGAGTACGATATGATCCAGAATTACAAGGTTCTTCAAGATGTCTTCAATAAGCTCAAGATCACTAAGCATATAGAAGTTAACAAACTCATAAAAGGGAGGCCATTGGATAATCTGGAGTTTATGCAATGGATGAAGAAATATTTTGATTCTGTTAATGGTGGTCTCCACAGTTACAATCCTGTAGAAAGGAGAGAGAGCAGGAAAGGTGGAAAAGAAATGGTTAGGAAATCAGTAAACCTCCAAGCTTCCAACAAACCAATCAGTTCTACCAACAAGGCTCATTCATCTCACAACAACCGCCGAGCTGATGTGTGTTCTGCTAACACTAAGAATCACTCTTTTAAAGCTGTGAAACCCAGTTCTGCTGCTGAATCTATATATGAAGAACAGATTACCGAGTTGAAGTTATCAGTTGACAGTCTTGAGAAAGAGCGCGATTTTTATTTCTCAAAGTTGAGGGATATCGAGATGTTGTGTCAAACCCCAGAGATAGAAAATTCACCGATTGTGGCAGCAATGCAGAAGATACTATATGCTACAGATGATGAAACATCTGTGGTGGCTGAAGCACAAGCCATGATGTCACAGCACATAAAGCTTTTGAGTCCTATCGTCGAGGTCTCAGAAGATAGTGTAATGGTTGAAAATCAGAAGCGAAAAAGCATTGATCTCGACAGTCCTGCAAACGGAAAACAGCCCCAGAGGCAAAGACTTTCTGATGTTTCCAATATCCAATGCAGTGGTTCTCCTCTTATTACCTTTTAGAGAAGTTTAAATGTTGCAATACTTTTGGTGTTTCTTGTGAACTAATAAATACTATGTTGAAAACTCGAGCATTCTATAACTTGTGGTTTGCTCGTATGTGTGTACTACAAGCTGTTTGTATTAAGGCAACTATATTAGCCATCTATATATCTTTATGAGTTGTATTGGTTTAGGAACAAGGAGAAATAGGAAATGTCAATATGACAAGAAATGATAAGGAACTAGTGAACCTTCAAAATCCTTCAAGCAAAAAGGGATTTTACTGTACTCTCTCAGCAGTCAATCAATGACTTGTTACTGTGTTGATACTTCAGAACATGCAGAATTTGCTTCCCTA ATGGCGAGCAACATAGGAATGATGGATTCCGCGTACTTCGTCGGAAGATCTGAAATACTTTCGTGGATCAATTCCACCCTCCATCTCAATCTCTCCAAAGTCGAAGAGGCAGCTTCAGGGGCAGTGCAGTGTCAATTGATGGACGCCGCCCACCCAGGGACGGTGCCAATGCACAAGGTCAATTTCGAGGCGAAGAACGAGTACGATATGATCCAGAATTACAAGGTTCTTCAAGATGTCTTCAATAAGCTCAAGATCACTAAGCATATAGAAGTTAACAAACTCATAAAAGGGAGGCCATTGGATAATCTGGAGTTTATGCAATGGATGAAGAAATATTTTGATTCTGTTAATGGTGGTCTCCACAGTTACAATCCTGTAGAAAGGAGAGAGAGCAGGAAAGGTGGAAAAGAAATGGTTAGGAAATCAGTAAACCTCCAAGCTTCCAACAAACCAATCAGTTCTACCAACAAGGCTCATTCATCTCACAACAACCGCCGAGCTGATGTGTGTTCTGCTAACACTAAGAATCACTCTTTTAAAGCTGTGAAACCCAGTTCTGCTGCTGAATCTATATATGAAGAACAGATTACCGAGTTGAAGTTATCAGTTGACAGTCTTGAGAAAGAGCGCGATTTTTATTTCTCAAAGTTGAGGGATATCGAGATGTTGTGTCAAACCCCAGAGATAGAAAATTCACCGATTGTGGCAGCAATGCAGAAGATACTATATGCTACAGATGATGAAACATCTGTGGTGGCTGAAGCACAAGCCATGATGTCACAGCACATAAAGCTTTTGAGTCCTATCGTCGAGGTCTCAGAAGATAGTGTAATGGTTGAAAATCAGAAGCGAAAAAGCATTGATCTCGACAGTCCTGCAAACGGAAAACAGCCCCAGAGGCAAAGACTTTCTGATGTTTCCAATATCCAATGCAGTGGTTCTCCTCTTATTACCTTTTAG MASNIGMMDSAYFVGRSEILSWINSTLHLNLSKVEEAASGAVQCQLMDAAHPGTVPMHKVNFEAKNEYDMIQNYKVLQDVFNKLKITKHIEVNKLIKGRPLDNLEFMQWMKKYFDSVNGGLHSYNPVERRESRKGGKEMVRKSVNLQASNKPISSTNKAHSSHNNRRADVCSANTKNHSFKAVKPSSAAESIYEEQITELKLSVDSLEKERDFYFSKLRDIEMLCQTPEIENSPIVAAMQKILYATDDETSVVAEAQAMMSQHIKLLSPIVEVSEDSVMVENQKRKSIDLDSPANGKQPQRQRLSDVSNIQCSGSPLITF Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22069.1 vs. NCBI nr
Match: gi|902234603|gb|KNA23510.1| (hypothetical protein SOVF_024240 [Spinacia oleracea]) HSP 1 Score: 616.3 bits (1588), Expect = 3.000e-173 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 1
BLAST of Spo22069.1 vs. NCBI nr
Match: gi|731314812|ref|XP_010688547.1| (PREDICTED: microtubule-associated protein RP/EB family member 1C-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 513.1 bits (1320), Expect = 3.600e-142 Identity = 268/323 (82.97%), Postives = 297/323 (91.95%), Query Frame = 1
BLAST of Spo22069.1 vs. NCBI nr
Match: gi|568824316|ref|XP_006466548.1| (PREDICTED: microtubule-associated protein RP/EB family member 1C [Citrus sinensis]) HSP 1 Score: 426.0 bits (1094), Expect = 5.700e-116 Identity = 230/327 (70.34%), Postives = 268/327 (81.96%), Query Frame = 1
BLAST of Spo22069.1 vs. NCBI nr
Match: gi|1009169902|ref|XP_015865916.1| (PREDICTED: microtubule-associated protein RP/EB family member 1C [Ziziphus jujuba]) HSP 1 Score: 425.6 bits (1093), Expect = 7.500e-116 Identity = 226/327 (69.11%), Postives = 265/327 (81.04%), Query Frame = 1
BLAST of Spo22069.1 vs. NCBI nr
Match: gi|567866721|ref|XP_006425983.1| (hypothetical protein CICLE_v10026070mg [Citrus clementina]) HSP 1 Score: 425.6 bits (1093), Expect = 7.500e-116 Identity = 229/327 (70.03%), Postives = 268/327 (81.96%), Query Frame = 1
BLAST of Spo22069.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RVF6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_024240 PE=4 SV=1) HSP 1 Score: 616.3 bits (1588), Expect = 2.100e-173 Identity = 320/320 (100.00%), Postives = 320/320 (100.00%), Query Frame = 1
BLAST of Spo22069.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D012_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g015560 PE=4 SV=1) HSP 1 Score: 513.1 bits (1320), Expect = 2.500e-142 Identity = 268/323 (82.97%), Postives = 297/323 (91.95%), Query Frame = 1
BLAST of Spo22069.1 vs. UniProtKB/TrEMBL
Match: V4RWL1_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026070mg PE=4 SV=1) HSP 1 Score: 425.6 bits (1093), Expect = 5.200e-116 Identity = 229/327 (70.03%), Postives = 268/327 (81.96%), Query Frame = 1
BLAST of Spo22069.1 vs. UniProtKB/TrEMBL
Match: W9QYX8_9ROSA (Microtubule-associated protein RP/EB family member 3 OS=Morus notabilis GN=L484_009284 PE=4 SV=1) HSP 1 Score: 422.5 bits (1085), Expect = 4.400e-115 Identity = 227/328 (69.21%), Postives = 269/328 (82.01%), Query Frame = 1
BLAST of Spo22069.1 vs. UniProtKB/TrEMBL
Match: I3SQI0_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 421.0 bits (1081), Expect = 1.300e-114 Identity = 229/327 (70.03%), Postives = 264/327 (80.73%), Query Frame = 1
BLAST of Spo22069.1 vs. ExPASy Swiss-Prot
Match: EB1C_ARATH (Microtubule-associated protein RP/EB family member 1C OS=Arabidopsis thaliana GN=EB1C PE=1 SV=1) HSP 1 Score: 358.2 bits (918), Expect = 9.200e-98 Identity = 202/336 (60.12%), Postives = 241/336 (71.73%), Query Frame = 1
BLAST of Spo22069.1 vs. ExPASy Swiss-Prot
Match: EB1B_ARATH (Microtubule-associated protein RP/EB family member 1B OS=Arabidopsis thaliana GN=EB1B PE=1 SV=1) HSP 1 Score: 299.3 bits (765), Expect = 5.100e-80 Identity = 162/289 (56.06%), Postives = 209/289 (72.32%), Query Frame = 1
BLAST of Spo22069.1 vs. ExPASy Swiss-Prot
Match: EB1A_ARATH (Microtubule-associated protein RP/EB family member 1A OS=Arabidopsis thaliana GN=EB1A PE=1 SV=1) HSP 1 Score: 295.8 bits (756), Expect = 5.600e-79 Identity = 158/267 (59.18%), Postives = 200/267 (74.91%), Query Frame = 1
BLAST of Spo22069.1 vs. ExPASy Swiss-Prot
Match: MARE3_HUMAN (Microtubule-associated protein RP/EB family member 3 OS=Homo sapiens GN=MAPRE3 PE=1 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.200e-41 Identity = 101/247 (40.89%), Postives = 145/247 (58.70%), Query Frame = 1
BLAST of Spo22069.1 vs. ExPASy Swiss-Prot
Match: MARE3_RAT (Microtubule-associated protein RP/EB family member 3 OS=Rattus norvegicus GN=Mapre3 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.600e-41 Identity = 101/247 (40.89%), Postives = 145/247 (58.70%), Query Frame = 1
BLAST of Spo22069.1 vs. TAIR (Arabidopsis)
Match: AT5G67270.1 (end binding protein 1C) HSP 1 Score: 358.2 bits (918), Expect = 5.200e-99 Identity = 202/336 (60.12%), Postives = 241/336 (71.73%), Query Frame = 1
BLAST of Spo22069.1 vs. TAIR (Arabidopsis)
Match: AT5G62500.1 (end binding protein 1B) HSP 1 Score: 299.3 bits (765), Expect = 2.900e-81 Identity = 162/289 (56.06%), Postives = 209/289 (72.32%), Query Frame = 1
BLAST of Spo22069.1 vs. TAIR (Arabidopsis)
Match: AT3G47690.1 (microtubule end binding protein EB1A) HSP 1 Score: 295.8 bits (756), Expect = 3.200e-80 Identity = 158/267 (59.18%), Postives = 200/267 (74.91%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22069.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo22069.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo22069.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo22069.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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