Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CAATTAGTTAAGAAATTGAACCAATTAGTTAAGCAACTAAAGTGGTCTTTCCGGTAAGGCGGTCTTACACAAAAGTTGCCGATTTTGAAAAGAATTTTTGTAGGGAGTAGGGGTGTTGGTGGGTTATTAGGTAAGTGTGAGAATAATATTGGTAAAAATTTCTATTTATAAAAGTGATGCAAGTATTAAGGGACGATCCAAAAAGAAAAACGGTGCGAATATTAAGGGACAGAGGGAGTATGATATATGTGCAATCTTTTAAGTATTGGCGGAGTAAAAGAAAGGCAGACTACTCCGCATAAAAAAAACAATAAAATAAAAAAAATAAAAAAATAAGCAACTATTGTGAAGTTTCCTATCGAATATTGCAAAGATACTCCCCATACAGTCTTACTACTTGTGAGTTGTGAATCTTGTGATTGTTTCAGATTTGAGAACTATAAAACGAGGCACACGAACTCCTCCCTCATTAACGACCTCTTCTTGTTTAAAAAATAAAAATAAACTCCCAAAATATAATCGACTCCCAATTCCCAAAGTCCCAACAACCCGAAAAAAATTAAAAAAGGTAAAAATAAATCATTTTCTACTTCCTGAATTTCGTGACCAAAAAAAGTCCAATTTCTCTACAACACAAAAACCTTTTTCGTGATAAGAAACAGGAGAGAGAAACTGAGATAACGAAGATGTGCACAACCGACAACAATGGTGAAACACCTTCATCGGCGGCGGCAATAGATTGGAGAGAGGAAACAATAAACGGAGGATCTCTACGACACGTGGACCTTCACAAAGGATCCAACGGCTGGGCTTCGCCGCCTGGGAATTTATTCTCTCTCCGATCAAAACATTACTTGTCCAAGAAGACCAAGTCTCCTGCCCCTGCAGACTACCTCTTGAAGCCTACCGCCGTTGACTGGCTTCGGTCAACGTCCAAGCTCGAGCACGTGCTTTCACGTGCCGATAACCGCGTTATGCGCGTGCTTCGCTCTCAGCAGAGTAATGGTAGCTTCATGAAGTCCTTCGTCTTCGCTATTAATCTTCAAGTTCCAGGTTTGATTTTCTTTTTCTTAATTTTGACATTTAATTTATGTGATGTCCGGAATTCGACTGTTTTATTGGTCTTTTGAAACAATTGCTGCTCAATTTTGGGAAAGAAATTGAATTTTTGTTAATTGGATTGTTTTGATTGATTGACAGGAAAACCTAGGGTTTGATTATGAGGATTTCTTTTTTAATTCGTTATTCAAACTGAAAATAATTTGGTTTTATAAATTTGAGCTGAAATACTTGAATTTCTGAAAGTCATCATAAATTATTAAAAACTTGAAGTTGATGCAATCCGACCACTTATTCAACTCTATTGATGCACACTTATTTAATTTGATTTTAATAGGCGGAGTAACCTAAGTTCAATTTTGAGGTTGTCGTGACAAAATATTGTTAAAGAATTGCTATTATGTACACGCAAATGAATGTTTTAGCTAGAAATGTGTGAAATTTTTACTCGTATTATCACATTAATGTTGTGAAGTTGTTTCATGATGCGTGGAAGAATCAGTTAGTGCTACATCTTGATCTCAGTAAATTCAGATCTAACATGATTAATTTAGCATTTGTGAAACATTTTTGTCCCTCCTTTTAGCTAAAAAGCAATCTAATTATTCCTCAATTTATTACTGCAATCTCTAGATTGATCGGCAAGGATAATTTTTGTCTTATTCGTCCTTAACTGTGAAAATAGTGATGATTTGCAAAAATGTTATTATTGTTAAATTTGAGCGAATATTAATAAGAAATGGGATCCAACAATAGCTGACAGAAAAAATTGTGTGACAAATGTGGCAGGGAGGGAGCACCACAATGCAGTATTTTACTTCTCAACAGACGAGCCAATCCAACCAGGTTCGTTATTAGACCGGTTCATAAATGGCGATGATACGTTCAGGAATAGCCGTTTGAAGCTAGTGAACAGAATAGTGAAGGGACCATGGATAGTAAAAACAGCTGTGGGGAACTACAGCGCATGCCTGTTAGGGAAGGCATTGACATGTAGATATCACAGGGGACCGGACTACTTGGAGGTTGATGTTGACATTTCGAGCTCGAAGATAGCTGGCGCGTTGGTGCACCTAGCATTGGGTTGTGTAACATCTGTAACGATAGACATGGGGTTTGTGGTGGAAGGTCAGACTGAAGATGAGTTGCCTGAAAAGTTGATTGGGGCTGTGAGGATTTGTCAAATGGAGATGGATTCAGCTGAGTTTGTTGACTCAAATACGCCGTCTGTTAATGGGGTTGGTGTGGGAAGGTTAGGGTTGGCCAAGGTGAATCATGCTGATGGGGAAGGGAGCAGTAGTGACCATTCTCCAAGAGTTCACCTTTAGATTTAATTTGGTTTAAAATACTACTAGTAACACTTGAGTTCATGGAGAGTCATTGAATTTAACATTTCAGCTTAAATTATCACATGATCGAATTCATCGAGTCATACGGCATCATGTAGACATTTATTGGTAGGTTTGGTGGTGGTGGTGGTAGTTGGTATAGATTGGGATGGCTTAAGTAAATTAACATGGACGAGGAAGGGGCAGGGGAGAGAGGGAGATCAACGGTGGTGGACACAGGACACGGTGATGCAATCGGGAAACAAATGGTTGTGTTAAGATGAGTGGGATGTGTTACTTTAGATTTTGACTTTTGGTATCTTGTCTAACTTGTCTTTCAATCATCCCTGGCAAAATGGAAAAAAACAACAAGGATTATTTCAAAAGATGATGATTGTATACAAAAGTGTTAATTATGCTGTCAATCCCCCTTTGTTTATTGGGACTGATTTGATGGTTTGATTTTGTAGATGGCCAGCCATACCTTTATAAGTTGGAATTGTCTACATATTTTGTTGGTGTTCTACAGAATTCTTTCTTTGCTTGCCACTTGATGATACTATGTACTAATACAGGCTAATAAGTCGTTGAAAGTCCAAGCTGTTTAATTTGATGTTTCTTCAACTTTGTTACTCCTACTACCCTACTAGAACAGGTTAAGTTTGGTGTTTCTACCCTAAACCCTAATTTGGTGTTTCTACACGTTAAAAACAAGGGTATTTGGGGTATTAAGTTTTGTTTTAGGGGTATTTTATGTATTATTGAAACGTGAAGGGTAGTTGGTGAATTATGACGTGCAAAGCTCAGGGAC CAATTAGTTAAGAAATTGAACCAATTAGTTAAGCAACTAAAGTGGTCTTTCCGGTAAGGCGGTCTTACACAAAAGTTGCCGATTTTGAAAAGAATTTTTGTAGGGAGTAGGGGTGTTGGTGGGTTATTAGGTAAGTGTGAGAATAATATTGGTAAAAATTTCTATTTATAAAAGTGATGCAAGTATTAAGGGACGATCCAAAAAGAAAAACGGTGCGAATATTAAGGGACAGAGGGAGTATGATATATGTGCAATCTTTTAAGTATTGGCGGAGTAAAAGAAAGGCAGACTACTCCGCATAAAAAAAACAATAAAATAAAAAAAATAAAAAAATAAGCAACTATTGTGAAGTTTCCTATCGAATATTGCAAAGATACTCCCCATACAGTCTTACTACTTGTGAGTTGTGAATCTTGTGATTGTTTCAGATTTGAGAACTATAAAACGAGGCACACGAACTCCTCCCTCATTAACGACCTCTTCTTGTTTAAAAAATAAAAATAAACTCCCAAAATATAATCGACTCCCAATTCCCAAAGTCCCAACAACCCGAAAAAAATTAAAAAAGGTAAAAATAAATCATTTTCTACTTCCTGAATTTCGTGACCAAAAAAAGTCCAATTTCTCTACAACACAAAAACCTTTTTCGTGATAAGAAACAGGAGAGAGAAACTGAGATAACGAAGATGTGCACAACCGACAACAATGGTGAAACACCTTCATCGGCGGCGGCAATAGATTGGAGAGAGGAAACAATAAACGGAGGATCTCTACGACACGTGGACCTTCACAAAGGATCCAACGGCTGGGCTTCGCCGCCTGGGAATTTATTCTCTCTCCGATCAAAACATTACTTGTCCAAGAAGACCAAGTCTCCTGCCCCTGCAGACTACCTCTTGAAGCCTACCGCCGTTGACTGGCTTCGGTCAACGTCCAAGCTCGAGCACGTGCTTTCACGTGCCGATAACCGCGTTATGCGCGTGCTTCGCTCTCAGCAGAGTAATGGTAGCTTCATGAAGTCCTTCGTCTTCGCTATTAATCTTCAAGTTCCAGGGAGGGAGCACCACAATGCAGTATTTTACTTCTCAACAGACGAGCCAATCCAACCAGGTTCGTTATTAGACCGGTTCATAAATGGCGATGATACGTTCAGGAATAGCCGTTTGAAGCTAGTGAACAGAATAGTGAAGGGACCATGGATAGTAAAAACAGCTGTGGGGAACTACAGCGCATGCCTGTTAGGGAAGGCATTGACATGTAGATATCACAGGGGACCGGACTACTTGGAGGTTGATGTTGACATTTCGAGCTCGAAGATAGCTGGCGCGTTGGTGCACCTAGCATTGGGTTGTGTAACATCTGTAACGATAGACATGGGGTTTGTGGTGGAAGGTCAGACTGAAGATGAGTTGCCTGAAAAGTTGATTGGGGCTGTGAGGATTTGTCAAATGGAGATGGATTCAGCTGAGTTTGTTGACTCAAATACGCCGTCTGTTAATGGGGTTGGTGTGGGAAGGTTAGGGTTGGCCAAGGTGAATCATGCTGATGGGGAAGGGAGCAGTAGTGACCATTCTCCAAGAGTTCACCTTTAGATTTAATTTGGTTTAAAATACTACTAGTAACACTTGAGTTCATGGAGAGTCATTGAATTTAACATTTCAGCTTAAATTATCACATGATCGAATTCATCGAGTCATACGGCATCATGTAGACATTTATTGGTAGGTTTGGTGGTGGTGGTGGTAGTTGGTATAGATTGGGATGGCTTAAGTAAATTAACATGGACGAGGAAGGGGCAGGGGAGAGAGGGAGATCAACGGTGGTGGACACAGGACACGGTGATGCAATCGGGAAACAAATGGTTGTGTTAAGATGAGTGGGATGTGTTACTTTAGATTTTGACTTTTGGTATCTTGTCTAACTTGTCTTTCAATCATCCCTGGCAAAATGGAAAAAAACAACAAGGATTATTTCAAAAGATGATGATTGTATACAAAAGTGTTAATTATGCTGTCAATCCCCCTTTGTTTATTGGGACTGATTTGATGGTTTGATTTTGTAGATGGCCAGCCATACCTTTATAAGTTGGAATTGTCTACATATTTTGTTGGTGTTCTACAGAATTCTTTCTTTGCTTGCCACTTGATGATACTATGTACTAATACAGGCTAATAAGTCGTTGAAAGTCCAAGCTGTTTAATTTGATGTTTCTTCAACTTTGTTACTCCTACTACCCTACTAGAACAGGTTAAGTTTGGTGTTTCTACCCTAAACCCTAATTTGGTGTTTCTACACGTTAAAAACAAGGGTATTTGGGGTATTAAGTTTTGTTTTAGGGGTATTTTATGTATTATTGAAACGTGAAGGGTAGTTGGTGAATTATGACGTGCAAAGCTCAGGGAC ATGTGCACAACCGACAACAATGGTGAAACACCTTCATCGGCGGCGGCAATAGATTGGAGAGAGGAAACAATAAACGGAGGATCTCTACGACACGTGGACCTTCACAAAGGATCCAACGGCTGGGCTTCGCCGCCTGGGAATTTATTCTCTCTCCGATCAAAACATTACTTGTCCAAGAAGACCAAGTCTCCTGCCCCTGCAGACTACCTCTTGAAGCCTACCGCCGTTGACTGGCTTCGGTCAACGTCCAAGCTCGAGCACGTGCTTTCACGTGCCGATAACCGCGTTATGCGCGTGCTTCGCTCTCAGCAGAGTAATGGTAGCTTCATGAAGTCCTTCGTCTTCGCTATTAATCTTCAAGTTCCAGGGAGGGAGCACCACAATGCAGTATTTTACTTCTCAACAGACGAGCCAATCCAACCAGGTTCGTTATTAGACCGGTTCATAAATGGCGATGATACGTTCAGGAATAGCCGTTTGAAGCTAGTGAACAGAATAGTGAAGGGACCATGGATAGTAAAAACAGCTGTGGGGAACTACAGCGCATGCCTGTTAGGGAAGGCATTGACATGTAGATATCACAGGGGACCGGACTACTTGGAGGTTGATGTTGACATTTCGAGCTCGAAGATAGCTGGCGCGTTGGTGCACCTAGCATTGGGTTGTGTAACATCTGTAACGATAGACATGGGGTTTGTGGTGGAAGGTCAGACTGAAGATGAGTTGCCTGAAAAGTTGATTGGGGCTGTGAGGATTTGTCAAATGGAGATGGATTCAGCTGAGTTTGTTGACTCAAATACGCCGTCTGTTAATGGGGTTGGTGTGGGAAGGTTAGGGTTGGCCAAGGTGAATCATGCTGATGGGGAAGGGAGCAGTAGTGACCATTCTCCAAGAGTTCACCTTTAG MCTTDNNGETPSSAAAIDWREETINGGSLRHVDLHKGSNGWASPPGNLFSLRSKHYLSKKTKSPAPADYLLKPTAVDWLRSTSKLEHVLSRADNRVMRVLRSQQSNGSFMKSFVFAINLQVPGREHHNAVFYFSTDEPIQPGSLLDRFINGDDTFRNSRLKLVNRIVKGPWIVKTAVGNYSACLLGKALTCRYHRGPDYLEVDVDISSSKIAGALVHLALGCVTSVTIDMGFVVEGQTEDELPEKLIGAVRICQMEMDSAEFVDSNTPSVNGVGVGRLGLAKVNHADGEGSSSDHSPRVHL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22117.1 vs. NCBI nr
Match: gi|902240023|gb|KNA25841.1| (hypothetical protein SOVF_002840 [Spinacia oleracea]) HSP 1 Score: 613.6 bits (1581), Expect = 1.800e-172 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1
BLAST of Spo22117.1 vs. NCBI nr
Match: gi|731362584|ref|XP_010692962.1| (PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 562.4 bits (1448), Expect = 4.800e-157 Identity = 278/301 (92.36%), Postives = 282/301 (93.69%), Query Frame = 1
BLAST of Spo22117.1 vs. NCBI nr
Match: gi|590571668|ref|XP_007011658.1| (PAB-dependent poly(A)-specific ribonuclease subunit PAN3 [Theobroma cacao]) HSP 1 Score: 394.0 bits (1011), Expect = 2.300e-106 Identity = 192/283 (67.84%), Postives = 226/283 (79.86%), Query Frame = 1
BLAST of Spo22117.1 vs. NCBI nr
Match: gi|225430563|ref|XP_002262758.1| (PREDICTED: protein ENHANCED DISEASE RESISTANCE 2-like [Vitis vinifera]) HSP 1 Score: 389.4 bits (999), Expect = 5.600e-105 Identity = 196/299 (65.55%), Postives = 231/299 (77.26%), Query Frame = 1
BLAST of Spo22117.1 vs. NCBI nr
Match: gi|357465975|ref|XP_003603272.1| (lipid-binding protein [Medicago truncatula]) HSP 1 Score: 389.4 bits (999), Expect = 5.600e-105 Identity = 189/297 (63.64%), Postives = 231/297 (77.78%), Query Frame = 1
BLAST of Spo22117.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S265_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_002840 PE=4 SV=1) HSP 1 Score: 613.6 bits (1581), Expect = 1.300e-172 Identity = 301/301 (100.00%), Postives = 301/301 (100.00%), Query Frame = 1
BLAST of Spo22117.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BEL1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_2g044910 PE=4 SV=1) HSP 1 Score: 562.4 bits (1448), Expect = 3.400e-157 Identity = 278/301 (92.36%), Postives = 282/301 (93.69%), Query Frame = 1
BLAST of Spo22117.1 vs. UniProtKB/TrEMBL
Match: G5DX32_SILLA (Putative uncharacterized protein (Fragment) OS=Silene latifolia PE=2 SV=1) HSP 1 Score: 443.0 bits (1138), Expect = 3.000e-121 Identity = 221/275 (80.36%), Postives = 246/275 (89.45%), Query Frame = 1
BLAST of Spo22117.1 vs. UniProtKB/TrEMBL
Match: G5DX33_SILLA (Putative uncharacterized protein (Fragment) OS=Silene latifolia PE=2 SV=1) HSP 1 Score: 438.7 bits (1127), Expect = 5.600e-120 Identity = 220/275 (80.00%), Postives = 244/275 (88.73%), Query Frame = 1
BLAST of Spo22117.1 vs. UniProtKB/TrEMBL
Match: A0A061GJE8_THECC (PAB-dependent poly(A)-specific ribonuclease subunit PAN3 OS=Theobroma cacao GN=TCM_036867 PE=4 SV=1) HSP 1 Score: 394.0 bits (1011), Expect = 1.600e-106 Identity = 192/283 (67.84%), Postives = 226/283 (79.86%), Query Frame = 1
BLAST of Spo22117.1 vs. ExPASy Swiss-Prot
Match: EDR2L_ARATH (Protein ENHANCED DISEASE RESISTANCE 2-like OS=Arabidopsis thaliana GN=EDR2L PE=2 SV=1) HSP 1 Score: 204.1 bits (518), Expect = 2.100e-51 Identity = 106/234 (45.30%), Postives = 150/234 (64.10%), Query Frame = 1
BLAST of Spo22117.1 vs. ExPASy Swiss-Prot
Match: EDR2_ARATH (Protein ENHANCED DISEASE RESISTANCE 2 OS=Arabidopsis thaliana GN=EDR2 PE=2 SV=1) HSP 1 Score: 194.1 bits (492), Expect = 2.200e-48 Identity = 101/234 (43.16%), Postives = 149/234 (63.68%), Query Frame = 1
BLAST of Spo22117.1 vs. TAIR (Arabidopsis)
Match: AT5G10750.1 (Protein of unknown function (DUF1336)) HSP 1 Score: 373.6 bits (958), Expect = 1.100e-103 Identity = 183/279 (65.59%), Postives = 219/279 (78.49%), Query Frame = 1
BLAST of Spo22117.1 vs. TAIR (Arabidopsis)
Match: AT5G25010.1 (Protein of unknown function (DUF1336)) HSP 1 Score: 297.7 bits (761), Expect = 7.800e-81 Identity = 153/294 (52.04%), Postives = 196/294 (66.67%), Query Frame = 1
BLAST of Spo22117.1 vs. TAIR (Arabidopsis)
Match: AT5G24990.1 (Protein of unknown function (DUF1336)) HSP 1 Score: 297.4 bits (760), Expect = 1.000e-80 Identity = 152/272 (55.88%), Postives = 193/272 (70.96%), Query Frame = 1
BLAST of Spo22117.1 vs. TAIR (Arabidopsis)
Match: AT5G25020.1 (Protein of unknown function (DUF1336)) HSP 1 Score: 256.5 bits (654), Expect = 2.000e-68 Identity = 142/293 (48.46%), Postives = 181/293 (61.77%), Query Frame = 1
BLAST of Spo22117.1 vs. TAIR (Arabidopsis)
Match: AT1G06050.1 (Protein of unknown function (DUF1336)) HSP 1 Score: 238.0 bits (606), Expect = 7.400e-63 Identity = 112/234 (47.86%), Postives = 166/234 (70.94%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22117.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22117.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22117.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo22117.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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