Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGATAATGATTATGAAAATAAACACAACGGTAATACAAGTTAGTTACAAATTGGTGTGGGGTTCGAACCTATGACCTGTCGTACAGAAGTTGTACATGCGTCATAAGTAAATATCTGAATCTTGCGTATTACATAAGAATCCTCAAACTGAAAGATTCTCACACTGCCACCTCTACTCCTACAACATCCACATATCAATATATAAATGTACCATTTTTAGCAAGTAGACCTCCAAACTTTACAAAATCCTCTGTTTCTTGTTTTGGCTGCAAAAATGGGTTTAATTCTGAGGCGATGTTTAACTCTTCTAGCATACTTAGCCATGATCCAAGTATGCTTCGGAAGTTTGAATTCAGCAGGGAAAGTGCAGTTAGATTTTTACTATGAGAGCTTGTGTCCTTACTGTGCCAAATTTATCATCAACGAGCTTCCTATCATCTTCCAGAACGGGTTGATTGACATCGTTGATCTTCGCCTTTTTCCTTGGGGAAACGCTAGGCTCACTTCCAACAACTCCTTTACTTGCCAGGTATAATCTACCCAGGTTGATGAGCTAAGTAGTTTTCATTTTCTTATTGTCAGTTTTCAAAATGAACAAAATTATTATTGATAGGATTAATTTTAAGTTGATGAATCAACCTAAATCACATGAATTCAAAAATCATAAAATCAAAAACTGAAAACTGAAAACTTACAATTATATGTAATTGAGGTTTTGTTTTTGTTATCATTGTTAAACTTTTTATAAACTGATTATCTGTTTTTGCTTGATGCTTTCATTGCAGCATGGCCCAACTGAATGCTTATTCAATTCTATTGAAGCTTGTGCAATTGATACCTGGCCTAATCTGGTAAAAAAAAAACTCTTTTGATATTTGCAGATTATCATATACTTTAGTAGTTTATTTGTTTCAAGTAAGCCACTGTATTTTTTTCATGAATTTGATGTAATCATAGTCGTCTTAAACATTTTAGAGGCCTGATCACCCATATGGCCATATCTAAATCTTTGACAGGATAAACACTTCCCGTTTATTAGCTGTGTTGAGAACCAAGTTTCTGAAGGCAATTACACCCAGTGGAAAACTTGTTTCAAGGAATTGGGTTTGAATCCAAAAGCTGTTACAAGTTGTTACAAAGGTGAATATGGCAAAAAGGTCAGTCTTCTTTTGTGATCTATTTTCACCTTTTCTTGTTAGTACGTTTGATGTCTTGTTAATATGTTCTGAAATTAATTTAAGTGTTGGATCGATTTCCTTGCAGCTTCAGCTAAAATATGGAGCACTAACTGCAGCACTCGAACCTCCTCATCAATATGTTCCCTGGGTAGTTGTGGATGGAGAACCTCTTCTTGAGGTCAGAACTGTCATTTTTATTGTCCTCGTAATTACATATGCCATCATTCTGTGTAATCTAATAATCTTTTGTTGTTCTTTTGGAAGATTAGTAACTAATACTTAATTTATCTTTTATGTTATAGGATTATGAAAACTTTGTAAGTTACATATGTAAAGCATACCAAGGAACTCCACCTAGTGCGTGCAAGAAAGAATCCTTTGAAAGTGTTTCGAGAAAGAGGACTGCTCATGTGGCCCGTGTCTGCTACACAGAACAGACTGCAAAGGCGCAATTCCTAGTGAACCTTTGGTCTTCCATAACATCATGGCTGGATCATATGATATAAACTCACGGATGATGATAAAGGTCGCAAGTTGCGACAACATTTAGTTGCCGCAATCTTACGTGTCGGAGTTTAACTAGTACATATATGCGTCACGTAGGCTATGTGTCATCAGAATAATTTTACTATCAATGTAATATTTTACTATGAAAATATATAAATAAGGTAGTCGATATAAAGAAAGAAACAAATTAGAATATTCAGATTTTACTACCTTTTTATTAAACATGTATAATAGGTTATATAAGTTAAATATTTTAATTTCTAATTTAAATCATGACACATAAGCATGTCATATCATCATTGTGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCATTTTCGTAAACTCAATCCTGTTTTATGTAAAAGAGAGTAGCCATAAAAGCGTTAGGCATACAAGTATAGAATTAGTTGTAGACTTGTAGCGTAAGCAACGACCAAGCTAGCTTGTTTGTTTAGGAAAGTCCTCTTAGTATCCTATGGCATGAACATTTGCCTTATGATCGAGTGTTGTTTAATTATGTATATCAAGATCAACTCTGTAATTCTGTAAGGATGTTGATAATGGTCTAATGGAAGAAGGTTGTTCAAATCTTAGTGATCAAGTTATGGCGTAATTAATGACTTCACTAAGAAAGATAATAACTATTACATCCGTCCCTTTTTATTTGCCCC TGATAATGATTATGAAAATAAACACAACGGTAATACAAGTTAGTTACAAATTGGTGTGGGGTTCGAACCTATGACCTGTCGTACAGAAGTTGTACATGCGTCATAAGTAAATATCTGAATCTTGCGTATTACATAAGAATCCTCAAACTGAAAGATTCTCACACTGCCACCTCTACTCCTACAACATCCACATATCAATATATAAATGTACCATTTTTAGCAAGTAGACCTCCAAACTTTACAAAATCCTCTGTTTCTTGTTTTGGCTGCAAAAATGGGTTTAATTCTGAGGCGATGTTTAACTCTTCTAGCATACTTAGCCATGATCCAAGTATGCTTCGGAAGTTTGAATTCAGCAGGGAAAGTGCAGTTAGATTTTTACTATGAGAGCTTGTGTCCTTACTGTGCCAAATTTATCATCAACGAGCTTCCTATCATCTTCCAGAACGGGTTGATTGACATCGTTGATCTTCGCCTTTTTCCTTGGGGAAACGCTAGGCTCACTTCCAACAACTCCTTTACTTGCCAGCATGGCCCAACTGAATGCTTATTCAATTCTATTGAAGCTTGTGCAATTGATACCTGGCCTAATCTGGATAAACACTTCCCGTTTATTAGCTGTGTTGAGAACCAAGTTTCTGAAGGCAATTACACCCAGTGGAAAACTTGTTTCAAGGAATTGGGTTTGAATCCAAAAGCTGTTACAAGTTGTTACAAAGGTGAATATGGCAAAAAGCTTCAGCTAAAATATGGAGCACTAACTGCAGCACTCGAACCTCCTCATCAATATGTTCCCTGGGTAGTTGTGGATGGAGAACCTCTTCTTGAGGATTATGAAAACTTTGTAAGTTACATATGTAAAGCATACCAAGGAACTCCACCTAGTGCGTGCAAGAAAGAATCCTTTGAAAGTGTTTCGAGAAAGAGGACTGCTCATGTGGCCCGTGTCTGCTACACAGAACAGACTGCAAAGGCGCAATTCCTAGTGAACCTTTGGTCTTCCATAACATCATGGCTGGATCATATGATATAAACTCACGGATGATGATAAAGGTCGCAAGTTGCGACAACATTTAGTTGCCGCAATCTTACGTGTCGGAGTTTAACTAGTACATATATGCGTCACGTAGGCTATGTGTCATCAGAATAATTTTACTATCAATGTAATATTTTACTATGAAAATATATAAATAAGGTAGTCGATATAAAGAAAGAAACAAATTAGAATATTCAGATTTTACTACCTTTTTATTAAACATGTATAATAGGTTATATAAGTTAAATATTTTAATTTCTAATTTAAATCATGACACATAAGCATGTCATATCATCATTGTGACACGGCTTAAAGGTCGCATGTTGCGACCTTTATCATTTTCGTAAACTCAATCCTGTTTTATGTAAAAGAGAGTAGCCATAAAAGCGTTAGGCATACAAGTATAGAATTAGTTGTAGACTTGTAGCGTAAGCAACGACCAAGCTAGCTTGTTTGTTTAGGAAAGTCCTCTTAGTATCCTATGGCATGAACATTTGCCTTATGATCGAGTGTTGTTTAATTATGTATATCAAGATCAACTCTGTAATTCTGTAAGGATGTTGATAATGGTCTAATGGAAGAAGGTTGTTCAAATCTTAGTGATCAAGTTATGGCGTAATTAATGACTTCACTAAGAAAGATAATAACTATTACATCCGTCCCTTTTTATTTGCCCC ATGGGTTTAATTCTGAGGCGATGTTTAACTCTTCTAGCATACTTAGCCATGATCCAAGTATGCTTCGGAAGTTTGAATTCAGCAGGGAAAGTGCAGTTAGATTTTTACTATGAGAGCTTGTGTCCTTACTGTGCCAAATTTATCATCAACGAGCTTCCTATCATCTTCCAGAACGGGTTGATTGACATCGTTGATCTTCGCCTTTTTCCTTGGGGAAACGCTAGGCTCACTTCCAACAACTCCTTTACTTGCCAGCATGGCCCAACTGAATGCTTATTCAATTCTATTGAAGCTTGTGCAATTGATACCTGGCCTAATCTGGATAAACACTTCCCGTTTATTAGCTGTGTTGAGAACCAAGTTTCTGAAGGCAATTACACCCAGTGGAAAACTTGTTTCAAGGAATTGGGTTTGAATCCAAAAGCTGTTACAAGTTGTTACAAAGGTGAATATGGCAAAAAGCTTCAGCTAAAATATGGAGCACTAACTGCAGCACTCGAACCTCCTCATCAATATGTTCCCTGGGTAGTTGTGGATGGAGAACCTCTTCTTGAGGATTATGAAAACTTTGTAAGTTACATATGTAAAGCATACCAAGGAACTCCACCTAGTGCGTGCAAGAAAGAATCCTTTGAAAGTGTTTCGAGAAAGAGGACTGCTCATGTGGCCCGTGTCTGCTACACAGAACAGACTGCAAAGGCGCAATTCCTAGTGAACCTTTGGTCTTCCATAACATCATGGCTGGATCATATGATATAA MGLILRRCLTLLAYLAMIQVCFGSLNSAGKVQLDFYYESLCPYCAKFIINELPIIFQNGLIDIVDLRLFPWGNARLTSNNSFTCQHGPTECLFNSIEACAIDTWPNLDKHFPFISCVENQVSEGNYTQWKTCFKELGLNPKAVTSCYKGEYGKKLQLKYGALTAALEPPHQYVPWVVVDGEPLLEDYENFVSYICKAYQGTPPSACKKESFESVSRKRTAHVARVCYTEQTAKAQFLVNLWSSITSWLDHMI Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22124.1 vs. NCBI nr
Match: gi|902173961|gb|KNA08335.1| (hypothetical protein SOVF_163510 [Spinacia oleracea]) HSP 1 Score: 534.6 bits (1376), Expect = 9.000e-149 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1
BLAST of Spo22124.1 vs. NCBI nr
Match: gi|731349285|ref|XP_010685915.1| (PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 396.7 bits (1018), Expect = 2.900e-107 Identity = 181/247 (73.28%), Postives = 203/247 (82.19%), Query Frame = 1
BLAST of Spo22124.1 vs. NCBI nr
Match: gi|731349287|ref|XP_010685916.1| (PREDICTED: gamma-interferon-inducible lysosomal thiol reductase-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 394.4 bits (1012), Expect = 1.500e-106 Identity = 181/249 (72.69%), Postives = 201/249 (80.72%), Query Frame = 1
BLAST of Spo22124.1 vs. NCBI nr
Match: gi|902187232|gb|KNA10877.1| (hypothetical protein SOVF_140330 [Spinacia oleracea]) HSP 1 Score: 387.9 bits (995), Expect = 1.400e-104 Identity = 176/250 (70.40%), Postives = 208/250 (83.20%), Query Frame = 1
BLAST of Spo22124.1 vs. NCBI nr
Match: gi|870853518|gb|KMT05399.1| (hypothetical protein BVRB_7g175290 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 383.3 bits (983), Expect = 3.400e-103 Identity = 172/233 (73.82%), Postives = 191/233 (81.97%), Query Frame = 1
BLAST of Spo22124.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QM37_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_163510 PE=4 SV=1) HSP 1 Score: 534.6 bits (1376), Expect = 6.300e-149 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 1
BLAST of Spo22124.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZM6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g175280 PE=4 SV=1) HSP 1 Score: 396.7 bits (1018), Expect = 2.000e-107 Identity = 181/247 (73.28%), Postives = 203/247 (82.19%), Query Frame = 1
BLAST of Spo22124.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QUB0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140330 PE=4 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 9.500e-105 Identity = 176/250 (70.40%), Postives = 208/250 (83.20%), Query Frame = 1
BLAST of Spo22124.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZF4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g175290 PE=4 SV=1) HSP 1 Score: 383.3 bits (983), Expect = 2.300e-103 Identity = 172/233 (73.82%), Postives = 191/233 (81.97%), Query Frame = 1
BLAST of Spo22124.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QVY6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_140340 PE=4 SV=1) HSP 1 Score: 338.2 bits (866), Expect = 8.700e-90 Identity = 156/223 (69.96%), Postives = 180/223 (80.72%), Query Frame = 1
BLAST of Spo22124.1 vs. ExPASy Swiss-Prot
Match: GILT_HUMAN (Gamma-interferon-inducible lysosomal thiol reductase OS=Homo sapiens GN=IFI30 PE=1 SV=3) HSP 1 Score: 127.1 bits (318), Expect = 2.700e-28 Identity = 69/188 (36.70%), Postives = 101/188 (53.72%), Query Frame = 1
BLAST of Spo22124.1 vs. ExPASy Swiss-Prot
Match: GILT_BOVIN (Gamma-interferon-inducible lysosomal thiol reductase OS=Bos taurus GN=IFI30 PE=2 SV=1) HSP 1 Score: 124.0 bits (310), Expect = 2.300e-27 Identity = 67/184 (36.41%), Postives = 103/184 (55.98%), Query Frame = 1
BLAST of Spo22124.1 vs. ExPASy Swiss-Prot
Match: GILT_PIG (Gamma-interferon-inducible-lysosomal thiol reductase OS=Sus scrofa GN=IFI30 PE=2 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.500e-26 Identity = 64/184 (34.78%), Postives = 104/184 (56.52%), Query Frame = 1
BLAST of Spo22124.1 vs. ExPASy Swiss-Prot
Match: GILT_RAT (Gamma-interferon-inducible lysosomal thiol reductase OS=Rattus norvegicus GN=Ifi30 PE=2 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 4.300e-26 Identity = 69/190 (36.32%), Postives = 105/190 (55.26%), Query Frame = 1
BLAST of Spo22124.1 vs. ExPASy Swiss-Prot
Match: GILT_MOUSE (Gamma-interferon-inducible lysosomal thiol reductase OS=Mus musculus GN=Ifi30 PE=1 SV=3) HSP 1 Score: 117.9 bits (294), Expect = 1.700e-25 Identity = 65/184 (35.33%), Postives = 104/184 (56.52%), Query Frame = 1
BLAST of Spo22124.1 vs. TAIR (Arabidopsis)
Match: AT1G07080.1 (Thioredoxin superfamily protein) HSP 1 Score: 240.0 bits (611), Expect = 1.600e-63 Identity = 114/230 (49.57%), Postives = 152/230 (66.09%), Query Frame = 1
BLAST of Spo22124.1 vs. TAIR (Arabidopsis)
Match: AT5G01580.1 (gamma interferon responsive lysosomal thiol (GILT) reductase family protein) HSP 1 Score: 205.7 bits (522), Expect = 3.400e-53 Identity = 100/231 (43.29%), Postives = 143/231 (61.90%), Query Frame = 1
BLAST of Spo22124.1 vs. TAIR (Arabidopsis)
Match: AT4G12890.1 (Gamma interferon responsive lysosomal thiol (GILT) reductase family protein) HSP 1 Score: 185.7 bits (470), Expect = 3.600e-47 Identity = 91/224 (40.62%), Postives = 136/224 (60.71%), Query Frame = 1
BLAST of Spo22124.1 vs. TAIR (Arabidopsis)
Match: AT4G12900.1 (Gamma interferon responsive lysosomal thiol (GILT) reductase family protein) HSP 1 Score: 183.7 bits (465), Expect = 1.400e-46 Identity = 92/213 (43.19%), Postives = 129/213 (60.56%), Query Frame = 1
BLAST of Spo22124.1 vs. TAIR (Arabidopsis)
Match: AT4G12960.2 (Gamma interferon responsive lysosomal thiol (GILT) reductase family protein) HSP 1 Score: 173.7 bits (439), Expect = 1.400e-43 Identity = 94/231 (40.69%), Postives = 132/231 (57.14%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22124.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22124.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22124.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22124.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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