Spo22282 (gene) | SpinachBase

Overview


Name	Spo22282
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Arginine/serine-rich splicing factor, putative
Location	chr3 : 7017237 .. 7021751 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCAGATATCAAAGAACGTGAGATTGAAGATCTGTTTTACAAGGTTTGAGTTTTGAACTTCTGTTCCTATGCCCCTAATGGATAAATCATAAATGTATGAAGCCCCCCCCCCCATTTTTTTTCCCTTGGCCTTGATATATTCCTATGCTGTTGTGGAGTAGACATCTGTTGATTTATTTTGTTGATCATGTTGTTTTATCTGTTTCTTAGAATGTTCCAGTTTCTATTTTAAAAAATTTGCACTTGTCTCTCGTACATGCATGTTAATATTTGGTGCAGTATGACTGATGCTTGTCTTCTTTGGTGCAGTATGGTCGTATTTTGGAGGTTGAATTAAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGGTAACCCTTGGCGCTTATTTTTGGTTTGATCCAACTGTTAATGTTGATGTTTGGTCTTGAGAATTAACTGCTATGTGCTTTAAATTGATAGTTTGAGGGTGCCCGAGATGCTGATGAGGCGATAAGGGGACGTGATGGCTACAACTTTGATGGCTGTCGCCTAAGGGTAATAATGTCGTTGCTTACTTTCATTTCATTAGTTACACATTCGATTCCTTACTTTTATGTTTCACAAATATAGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAGCTGGTAGTGAACGTCGCGGTGGAGGCGGTGGAGGTGGTGGAGGTGGTGGAGGCGCTGGAGGGCGCTATGGTGCATCACGCCATACTGAGTATCGAGGTCTGTTTATTTTGGTTCACGGTAACCCTGAGGTTAAGCGTATACATAATAATGACATAGACTCTGTGCTCTTACAAAAAAAGGTTTATATCAAAATGACTACGGTGATGGAAAGATGACACCAATATGGTAATATCGATTTTAAAAAGCGAAGAATGGAGTAGAGGAAAGGCCCTAAAAGCTAGCTTTCTTTATCTTCATTTCTTTTTTCTGTCTGCCTTCCTTAATCCTGACCCCCTTGCTTTGAGAAGGCTCACTGTGACCTATCATCCACCTTCCTCTATTTCTTCCTTTCAATTCGAAAATGTATATTACCCTTACATCATCGTTTAGGTCATCTTGATGCACGCAGCGGCCTCAGTGCTATCCTTTCAATTCGAAAATGTATATTACCCTTACATCATCGTTTAGGTCATCTTGATGCACGCAGCGGCCTCAGTGCTATCCCAGGAATTAACAAATTACAGGGTTAATTTTAGTGTTACGCTTAATCTCAAGGCCACCTTGGAAAATCTCCCTTGTTTACAAACTCTTTATTCCTTGAATAAAGCAATTGAAAAGTTGCGCTTGATATGCAGTCATTGTACGTGGGCTTCCGTCTTCTGCATCATGGCAGGATTTAAAGGTGTTTTTTCTGACTGTTGTGATACTGACAAGCTATGTCAAGCTTCTTATGAGTTCAAGTTTCCATCTTAACCTCTGACTCAATTTCAGGATCACATGCGAAAAGCTGGCGATGTTTGCTTTGCAGAAGTTTCACGTGACAGTGAAGGTATTTCCTGAACTATCTGCTGCGGTTGTCAACCATCTATGCTAAGAGAAGGATGGAGTAATATGTTGCTTATGTTATTTTTTTCTTCTTCTCAGAATTGCTAAATAAAACCTTGTTTAATGCCTTTAGAAGTGAATGGCATAGAATGTTACATCTATGATATCCTTGTTTCTGAGTCCAGTCATCAAGGTATTTATATGAAATGCTACTTAGCATATTATGTTAAGCAGATGACCTGCAACAGATTAATCCTAACAGCAGATCTACTGATGTAGTTTTACTGTGTACCACTGTGATGATATGATACCCTTTATATTAAAAGTGCCGAAGATGAACGTTGAAGATGTTACTGTAAAATGACTTAGTGTTAAAAAAATTGATATTTCTGTGCGTAGAGCTGAATCTACAAGCGAGTGTTTGCAATTCTGCGTCCAAACATAAACCATCTGAGCTTTTCTTTTTTGAGTTGCTAAAGTCTAATTGATTTCAACTGCTCACAGTCAACTAATCTGGGAAATTTCTGATGCCATTGGTTATCGTTATGGAGGAACATTGATGATTCTGGATTTTCGACTCAGTAATTACGTGTGTGCTTGTATTGACGTGTTACTTGTTTGAAGCTTTTAATCTATGCTTCCTTTCTCCTTGAATGTTTTATGTATTTTCACAGGAACTTTCGGCTTGGTTGACTATACCAACTCTGAAGACATGAAATATGCTGTAAGTGTTTTAAAGTGTAGTGGATCTATTTGGATTTTGGGTCTATTTTCTTCTTCTTCGTATACTGCTTTCACATGCATAGTTTTAATTTTGTTAATGATGGCATTTTTTAGATCCGGAAACTGGATGACACTGAATTCAAAAACCCTTGGTCAAAATCTTATATTCGGGTGAGTGACTTTCTCTTGGATGAATTTTCTGTTCTGAGGACAAGTATTGATCCCTTGTTTACTTATCATTTTCTGCACCTTGCTGTTTTCTGTATTTATTCAACCATATACTCTAGTTTTCATGTTGATGACATTCAACCACTGGTGCTCCATTATTAGTGACCATCTTTCCTGTATTCCCTCTCAAACAATGGCTTATGTTCGAATAGTACTCAGGATTAAGTGACACTTTGGTTTCCTTAGCCTATAGAGACTGGTGATAAATTTCCAAACAACAGGTTGTGTTCCATAATAAATAATAGGGTTGTAAGTTTCTTTCCTTGGCTTTTTTTGACATGGTTGTGTCATTGCAGGTGAAGAAGCATGACAGAAGCCCAATTAGGGGTCGCAGCAGGAGCAGGAGCAGGAGTAGGAGTAGGAGCAGGAGCAAGAGCAGAAGCAGGAGTAGAAGCCCGAAAAGGAATAGAAGGTATTCATTTTCCAAAAAAAAATTCAATTTTTCTTCTTGGTTTTTGTTGTTTATAGTCCTTAGCTCTGTTAATAAGTGACTAAATTGTAAAAGAAAGTGGTATAAAATTGAGAATATATGGCAAAATCACATACCATCTAGATCGGATAATGGGGTTGTTTAATTTTTTTGAATTCGGCTGCAGCAAATCACTGGAAAGGTCGGTGTCAAGATCACCATCCAGGTCAAGGTCTGCATCTCCTGTGAAATCTACAAGGTACTGCAGTTGATTATGCAGGGATTTGACTCCTTGCTTCCTATATACTGTAAAACCTTTTTTCTCAGTTTTTCACCAACATGCAGGCCAAAGTCTAGATCCAAGTCGAAGTCCCCCTCTAAACCACGGTCAAAGTCCCCCTCTAAGCCACAGTCAAGGTCAAGGTCAAGGTCAAGGTCAAGGTCCAGATCACCGCTGTAGTACTAGACTACTAGGTATGACTTTGGTTTAGAACCTCATAGATCTGTTCAACAAAATGTGAAATGGTTCATGTTCATTAATATGCGAGTTTATTATGACCTGTGGTTCAATTACCATGATTTGACGGGCTTCTGTTTTTTTTTTCTCTTCTTACAGTCTATGTGGCACTTGGGTAAGAGCAATTTCTCAGCCTTGTGAGCAGCAGCAATTCAATTAGTACGCCTTCAATGAACTTTCCTCTAACGGCTAATTGAATTCTGTAAAACAATGTGAGGCAGACATCGTGGATTCTTTAAATTAGAGCTTTAGTTTGAAGATTTATATCCAGAGTCTATTTTTAAGTATATTGTTGCTTAGTGTATTTTGCTTCTAGTTTTTAATCTGCTTTCTCGGTTTGAAACAATTTTTTGTCTTGTTTTGAGACTACTAGTTAAAATTTTGAACGATTCTATTTCCCTGTGAGAAATGTTCTATTATGACCGAATGCTGGTGGCATGTAAACAGCAAACTCATTTCTCTTTTTGAATTTTTATAAAACTAAATTGCATCAAGCATAGAACGATCGACGGAGGTATGGTTCTTTTAAAAATCATTTCCCTTTTTTAGCATCGGAATGAAACTCGATTACCAAACTACCTTCCATGTAGGTTCGGATACACCTCAATTTATTTTAATTTTTTTTTTCAGAGTAAAAGACAGCGATTTTATCCACTAAAACTGCTATCTCAAATAGGGGTTATGCCTAGTAAAACTACTACCATATAAGAAAGCACTACCTCATGATGTGTTTTCTATAGTATCACTATCTTAGCTAGCAATTTTACCTTTTTCAAAAAAAATATACCGCTATTCAGGTAGCGGTTTTGCTCTTCGATAAACTTATCCGATCCTACGTGGACGGTAGTTTAGTAATTAAGTTTCATTCCGATGTTAAATGGAAAATAAGTTTTAGAAGAACTATAGTTCCTCAAATTGTTCACAAGCATAGCGGTACTATTGTTACTATCACAAACTTGTCTAGTAAACAGAACTGTAATTTTTTTTTTTTTACCGAGCTTCCATGTCTGAAATGGAAGCATTGTTCAAGGAACCCTGCTCTAAATCGTAATTGGGATGGTCTGTCTGTAATAA

mRNA sequence

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCAGATATCAAAGAACGTGAGATTGAAGATCTGTTTTACAAGTATGGTCGTATTTTGGAGGTTGAATTAAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGTTTGAGGGTGCCCGAGATGCTGATGAGGCGATAAGGGGACGTGATGGCTACAACTTTGATGGCTGTCGCCTAAGGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAGCTGGTAGTGAACGTCGCGGTGGAGGCGGTGGAGGTGGTGGAGGTGGTGGAGGCGCTGGAGGGCGCTATGGTGCATCACGCCATACTGAGTATCGAGTCATTGTACGTGGGCTTCCGTCTTCTGCATCATGGCAGGATTTAAAGGATCACATGCGAAAAGCTGGCGATGTTTGCTTTGCAGAAGTTTCACGTGACAGTGAAGGAACTTTCGGCTTGGTTGACTATACCAACTCTGAAGACATGAAATATGCTATCCGGAAACTGGATGACACTGAATTCAAAAACCCTTGGTCAAAATCTTATATTCGGGTGAAGAAGCATGACAGAAGCCCAATTAGGGGTCGCAGCAGGAGCAGGAGCAGGAGTAGGAGTAGGAGCAGGAGCAAGAGCAGAAGCAGGAGTAGAAGCCCGAAAAGGAATAGAAGCAAATCACTGGAAAGGTCGGTGTCAAGATCACCATCCAGGTCAAGGTCTGCATCTCCTGTGAAATCTACAAGGCCAAAGTCTAGATCCAAGTCGAAGTCCCCCTCTAAACCACGGTCAAAGTCCCCCTCTAAGCCACAGTCAAGGTCAAGGTCAAGGTCAAGGTCAAGGTCCAGATCACCGCTGTAGTACTAGACTACTAGTCTATGTGGCACTTGGGTAAGAGCAATTTCTCAGCCTTGTGAGCAGCAGCAATTCAATTAGTACGCCTTCAATGAACTTTCCTCTAACGGCTAATTGAATTCTGTAAAACAATGTGAGGCAGACATCGTGGATTCTTTAAATTAGAGCTTTAGTTTGAAGATTTATATCCAGAGTCTATTTTTAAGTATATTGTTGCTTAGTGTATTTTGCTTCTAGTTTTTAATCTGCTTTCTCGGTTTGAAACAATTTTTTGTCTTGTTTTGAGACTACTAGTTAAAATTTTGAACGATTCTATTTCCCTGTGAGAAATGTTCTATTATGACCGAATGCTGGTGGCATGTAAACAGCAAACTCATTTCTCTTTTTGAATTTTTATAAAACTAAATTGCATCAAGCATAGAACGATCGACGGAGGTATGGTTCTTTTAAAAATCATTTCCCTTTTTTAGCATCGGAATGAAACTCGATTACCAAACTACCTTCCATGTAGGTTCGGATACACCTCAATTTATTTTAATTTTTTTTTTCAGAGTAAAAGACAGCGATTTTATCCACTAAAACTGCTATCTCAAATAGGGGTTATGCCTAGTAAAACTACTACCATATAAGAAAGCACTACCTCATGATGTGTTTTCTATAGTATCACTATCTTAGCTAGCAATTTTACCTTTTTCAAAAAAAATATACCGCTATTCAGGTAGCGGTTTTGCTCTTCGATAAACTTATCCGATCCTACGTGGACGGTAGTTTAGTAATTAAGTTTCATTCCGATGTTAAATGGAAAATAAGTTTTAGAAGAACTATAGTTCCTCAAATTGTTCACAAGCATAGCGGTACTATTGTTACTATCACAAACTTGTCTAGTAAACAGAACTGTAATTTTTTTTTTTTTACCGAGCTTCCATGTCTGAAATGGAAGCATTGTTCAAGGAACCCTGCTCTAAATCGTAATTGGGATGGTCTGTCTGTAATAA

Coding sequence (CDS)

ATGAGTAACCGTTTCTCTCGTACCATCTATGTTGGTAACCTACCTTCAGATATCAAAGAACGTGAGATTGAAGATCTGTTTTACAAGTATGGTCGTATTTTGGAGGTTGAATTAAAAGTTCCACCTCGACCTCCTTGTTTTTGCTTCGTGGAGTTTGAGGGTGCCCGAGATGCTGATGAGGCGATAAGGGGACGTGATGGCTACAACTTTGATGGCTGTCGCCTAAGGGTTGAACTTGCACATGGTGGACGGGGATCAGGATCATCAGCTGGTAGTGAACGTCGCGGTGGAGGCGGTGGAGGTGGTGGAGGTGGTGGAGGCGCTGGAGGGCGCTATGGTGCATCACGCCATACTGAGTATCGAGTCATTGTACGTGGGCTTCCGTCTTCTGCATCATGGCAGGATTTAAAGGATCACATGCGAAAAGCTGGCGATGTTTGCTTTGCAGAAGTTTCACGTGACAGTGAAGGAACTTTCGGCTTGGTTGACTATACCAACTCTGAAGACATGAAATATGCTATCCGGAAACTGGATGACACTGAATTCAAAAACCCTTGGTCAAAATCTTATATTCGGGTGAAGAAGCATGACAGAAGCCCAATTAGGGGTCGCAGCAGGAGCAGGAGCAGGAGTAGGAGTAGGAGCAGGAGCAAGAGCAGAAGCAGGAGTAGAAGCCCGAAAAGGAATAGAAGCAAATCACTGGAAAGGTCGGTGTCAAGATCACCATCCAGGTCAAGGTCTGCATCTCCTGTGAAATCTACAAGGCCAAAGTCTAGATCCAAGTCGAAGTCCCCCTCTAAACCACGGTCAAAGTCCCCCTCTAAGCCACAGTCAAGGTCAAGGTCAAGGTCAAGGTCAAGGTCCAGATCACCGCTGTAG

Protein sequence

MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADEAIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDTEFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo22282.1	Spo22282.1	mRNA

Homology

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BLAST of Spo22282.1 vs. NCBI nr
Match: gi|902099826|gb|KNA03491.1| (hypothetical protein SOVF_208700 [Spinacia oleracea])

HSP 1 Score: 522.7 bits (1345), Expect = 4.100e-145
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE
Sbjct: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT
Sbjct: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR
Sbjct: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240

Query: 241 SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL 293
           SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL
Sbjct: 241 SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL 292

[Close]

BLAST of Spo22282.1 vs. NCBI nr
Match: gi|778698631|ref|XP_011654574.1| (PREDICTED: serine/arginine-rich splicing factor SR34A isoform X1 [Cucumis sativus])

HSP 1 Score: 389.8 bits (1000), Expect = 4.200e-105
Identity = 219/281 (77.94%), Postives = 245/281 (87.19%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+RFSRTIYVGNLPSDIKE EIEDLFYKYGRIL++ELK+PPRPPC+CFVEFE  RDA++
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSS--------AGSERRGGGGGGGGGGGGAGGRY 120
           AIR RDGYNFDGCRLRVELAHGGRG  SS         G    GGGGGGGGGGGG GGR+
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GASRHTEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKY 180
           G S+ +EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTN +DMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSK 240
           AIRKLDDTEF+NPW+++YIRVKK+D SP R RSRSRSRSRSRSRS+SRSRSR+ +RNRSK
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240

Query: 241 SLE-RSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKS 273
           S E RSVSRS SRSRS SP+KS+RP+S+S+S SP + R  S
Sbjct: 241 SAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 281

[Close]

BLAST of Spo22282.1 vs. NCBI nr
Match: gi|661891111|emb|CDP04993.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 382.9 bits (982), Expect = 5.100e-103
Identity = 215/283 (75.97%), Postives = 236/283 (83.39%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS RFSRTIYVGNLPSDIKE E+EDLFYKYGRIL++ELK+PPRPPC+CFVEFE  RDA++
Sbjct: 1   MSGRFSRTIYVGNLPSDIKEWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENGRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRG-----------SGSSAGSERRGGGGGGGGGGGGAG 120
           AIRGRDGYNFDGCRLRVELAHGGRG            G S G    GGGGGGGGGGGG G
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSSDRRSGYGGGSGGGGGGGGGGGGGGGGGGGG 120

Query: 121 GRYGASRHTEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSED 180
           GRYG SRH+E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD EGTFGLVDYTN ED
Sbjct: 121 GRYGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDGEGTFGLVDYTNYED 180

Query: 181 MKYAIRKLDDTEFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRN 240
           MKYAIRKLDD+EF+NPW+++YIRVK++  SP            SRSRS+SRSRSRSP+RN
Sbjct: 181 MKYAIRKLDDSEFRNPWTRTYIRVKEYKGSP------------SRSRSRSRSRSRSPRRN 240

Query: 241 RSKSLERSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKS 273
           RSKSLERS SRSPS+SRSASPVKS+R KSRS+S SP   RS S
Sbjct: 241 RSKSLERSASRSPSKSRSASPVKSSRAKSRSRSASPHPARSGS 271

[Close]

BLAST of Spo22282.1 vs. NCBI nr
Match: gi|743900779|ref|XP_011043695.1| (PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X1 [Populus euphratica])

HSP 1 Score: 381.7 bits (979), Expect = 1.100e-102
Identity = 217/280 (77.50%), Postives = 245/280 (87.50%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS RFSRTIYVGNLP+DI+E ++EDLFYKYGRIL+VELK+PPRPPC+CFVEFE ARDA++
Sbjct: 27  MSGRFSRTIYVGNLPADIRESKVEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAED 86

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AIRGRDGYNFDG RLRVELAHGGRG  S+      GGGGGGGGGGGG G R G SRH+E+
Sbjct: 87  AIRGRDGYNFDGSRLRVELAHGGRGPSSNDRRGGYGGGGGGGGGGGGGGARLGISRHSEF 146

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RD +GT GLVDYTN EDMKYAIRKLDDT
Sbjct: 147 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDGDGTLGLVDYTNHEDMKYAIRKLDDT 206

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EFKNPW+++YIRVK+++ SP   RSRSR RSRSRSRS+SRSRSRSP+RNRSKSLERSVSR
Sbjct: 207 EFKNPWARAYIRVKQYEGSP--SRSRSRGRSRSRSRSRSRSRSRSPRRNRSKSLERSVSR 266

Query: 241 SPSRS------RSASPVKSTRPKSRSKSKSPSKPRSKSPS 275
           S SRS      RSASP+KS+RPKSRS+SKS S  +++S S
Sbjct: 267 SRSRSRSRSKTRSASPLKSSRPKSRSRSKSESPTKARSGS 304

[Close]

BLAST of Spo22282.1 vs. NCBI nr
Match: gi|743900781|ref|XP_011043696.1| (PREDICTED: serine/arginine-rich splicing factor SR34A-like isoform X2 [Populus euphratica])

HSP 1 Score: 381.7 bits (979), Expect = 1.100e-102
Identity = 217/280 (77.50%), Postives = 245/280 (87.50%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS RFSRTIYVGNLP+DI+E ++EDLFYKYGRIL+VELK+PPRPPC+CFVEFE ARDA++
Sbjct: 1   MSGRFSRTIYVGNLPADIRESKVEDLFYKYGRILDVELKIPPRPPCYCFVEFENARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AIRGRDGYNFDG RLRVELAHGGRG  S+      GGGGGGGGGGGG G R G SRH+E+
Sbjct: 61  AIRGRDGYNFDGSRLRVELAHGGRGPSSNDRRGGYGGGGGGGGGGGGGGARLGISRHSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RD +GT GLVDYTN EDMKYAIRKLDDT
Sbjct: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDGDGTLGLVDYTNHEDMKYAIRKLDDT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EFKNPW+++YIRVK+++ SP   RSRSR RSRSRSRS+SRSRSRSP+RNRSKSLERSVSR
Sbjct: 181 EFKNPWARAYIRVKQYEGSP--SRSRSRGRSRSRSRSRSRSRSRSPRRNRSKSLERSVSR 240

Query: 241 SPSRS------RSASPVKSTRPKSRSKSKSPSKPRSKSPS 275
           S SRS      RSASP+KS+RPKSRS+SKS S  +++S S
Sbjct: 241 SRSRSRSRSKTRSASPLKSSRPKSRSRSKSESPTKARSGS 278

[Close]

BLAST of Spo22282.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QAD1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_208700 PE=4 SV=1)

HSP 1 Score: 522.7 bits (1345), Expect = 2.900e-145
Identity = 292/292 (100.00%), Postives = 292/292 (100.00%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE
Sbjct: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT
Sbjct: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR
Sbjct: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240

Query: 241 SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL 293
           SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL
Sbjct: 241 SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL 292

[Close]

BLAST of Spo22282.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KLR9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G138510 PE=4 SV=1)

HSP 1 Score: 389.8 bits (1000), Expect = 2.900e-105
Identity = 219/281 (77.94%), Postives = 245/281 (87.19%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+RFSRTIYVGNLPSDIKE EIEDLFYKYGRIL++ELK+PPRPPC+CFVEFE  RDA++
Sbjct: 1   MSSRFSRTIYVGNLPSDIKEYEIEDLFYKYGRILDIELKIPPRPPCYCFVEFESVRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSS--------AGSERRGGGGGGGGGGGGAGGRY 120
           AIR RDGYNFDGCRLRVELAHGGRG  SS         G    GGGGGGGGGGGG GGR+
Sbjct: 61  AIRARDGYNFDGCRLRVELAHGGRGPSSSDRRSSYGGGGGGGGGGGGGGGGGGGGGGGRF 120

Query: 121 GASRHTEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKY 180
           G S+ +EYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFG+VDYTN +DMKY
Sbjct: 121 GVSKRSEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGIVDYTNYDDMKY 180

Query: 181 AIRKLDDTEFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSK 240
           AIRKLDDTEF+NPW+++YIRVKK+D SP R RSRSRSRSRSRSRS+SRSRSR+ +RNRSK
Sbjct: 181 AIRKLDDTEFRNPWARAYIRVKKYDGSPTRSRSRSRSRSRSRSRSRSRSRSRTARRNRSK 240

Query: 241 SLE-RSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKS 273
           S E RSVSRS SRSRS SP+KS+RP+S+S+S SP + R  S
Sbjct: 241 SAERRSVSRSVSRSRSPSPIKSSRPRSKSRSGSPRQAREGS 281

[Close]

BLAST of Spo22282.1 vs. UniProtKB/TrEMBL
Match: A0A068UBH5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019888001 PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.500e-103
Identity = 215/283 (75.97%), Postives = 236/283 (83.39%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS RFSRTIYVGNLPSDIKE E+EDLFYKYGRIL++ELK+PPRPPC+CFVEFE  RDA++
Sbjct: 1   MSGRFSRTIYVGNLPSDIKEWEVEDLFYKYGRILDIELKIPPRPPCYCFVEFENGRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRG-----------SGSSAGSERRGGGGGGGGGGGGAG 120
           AIRGRDGYNFDGCRLRVELAHGGRG            G S G    GGGGGGGGGGGG G
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPSSSSDRRSGYGGGSGGGGGGGGGGGGGGGGGGGG 120

Query: 121 GRYGASRHTEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSED 180
           GRYG SRH+E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRD EGTFGLVDYTN ED
Sbjct: 121 GRYGISRHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDGEGTFGLVDYTNYED 180

Query: 181 MKYAIRKLDDTEFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRN 240
           MKYAIRKLDD+EF+NPW+++YIRVK++  SP            SRSRS+SRSRSRSP+RN
Sbjct: 181 MKYAIRKLDDSEFRNPWTRTYIRVKEYKGSP------------SRSRSRSRSRSRSPRRN 240

Query: 241 RSKSLERSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKS 273
           RSKSLERS SRSPS+SRSASPVKS+R KSRS+S SP   RS S
Sbjct: 241 RSKSLERSASRSPSKSRSASPVKSSRAKSRSRSASPHPARSGS 271

[Close]

BLAST of Spo22282.1 vs. UniProtKB/TrEMBL
Match: A0A0M9UMT5_NICAT (Serine/arginine-rich-splicing factor SR34A OS=Nicotiana attenuata PE=4 SV=1)

HSP 1 Score: 382.9 bits (982), Expect = 3.500e-103
Identity = 225/289 (77.85%), Postives = 252/289 (87.20%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS RFSRTIYVGNLP+DIKE E+EDLFYKYGRIL++ELK+PPRPPCFCFVEFE ARDA++
Sbjct: 1   MSGRFSRTIYVGNLPADIKEWEVEDLFYKYGRILDIELKIPPRPPCFCFVEFENARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AIRGRDGYNFDGCRLRVELAHGGRG  SS  S+RRGG G   G     GGR+G SRH+EY
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGRGPPSS--SDRRGGYGRSDG-----GGRHGISRHSEY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTN +DMKYAIRKLDDT
Sbjct: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNCDDMKYAIRKLDDT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EFKNPW+++YIRV++H RSP   RSRSRSRSRSRSRS   SRSRSPKR+RSKS  RSV R
Sbjct: 181 EFKNPWTRTYIRVREHKRSP--SRSRSRSRSRSRSRSPRGSRSRSPKRSRSKSAGRSVLR 240

Query: 241 S-PSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRS 289
           S P++SRSASPVKSTRP+SRS+S+S S+ RSKS S+ +S S  ++RS S
Sbjct: 241 SPPAKSRSASPVKSTRPRSRSRSRSRSRSRSKSKSRSRSASPRQARSNS 280

[Close]

BLAST of Spo22282.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8Y6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_000160 PE=4 SV=1)

HSP 1 Score: 381.3 bits (978), Expect = 1.000e-102
Identity = 214/274 (78.10%), Postives = 231/274 (84.31%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+RFSRTIYVGNLP DIKE E+EDLFYKYGRIL++ELKVPPRPP +CFVEFE +RDAD+
Sbjct: 1   MSSRFSRTIYVGNLPGDIKEHEVEDLFYKYGRILDIELKVPPRPPSYCFVEFESSRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AIRGRDGYNFDGCRLRVELAHGGR  GSS+ SERRGGG           GRYGASR T+Y
Sbjct: 61  AIRGRDGYNFDGCRLRVELAHGGR--GSSSASERRGGG----------SGRYGASRRTDY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT
Sbjct: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EFKNPW+KSYIRVK+ + S  R                SRSRSRSPKRNRSK+LE+SVSR
Sbjct: 181 EFKNPWAKSYIRVKRGEGSSTR----------------SRSRSRSPKRNRSKALEKSVSR 240

Query: 241 SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPS 275
           SPSRSRSASPVKS RPKSRS+S+S SK RS+S S
Sbjct: 241 SPSRSRSASPVKSARPKSRSRSRSLSKSRSRSRS 246

[Close]

BLAST of Spo22282.1 vs. ExPASy Swiss-Prot
Match: SR34A_ARATH (Serine/arginine-rich splicing factor SR34A OS=Arabidopsis thaliana GN=SR34A PE=2 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 2.700e-96
Identity = 210/300 (70.00%), Postives = 246/300 (82.00%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS RFSR+IYVGNLP DI+E EIED+FYKYGRI+++ELKVPPRPPC+CFVEFE +RDA++
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGG---GGGGGAGG--RYGAS 120
           AI+GRDGYN DGCRLRVELAHGGRG  SS   +RRGG GGGG   GGGGG GG  R+G S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSS---DRRGGYGGGGSGYGGGGGGGGSARFGVS 120

Query: 121 RHTEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIR 180
           RH+E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTN +DMKYAIR
Sbjct: 121 RHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRN----RS 240
           KLDDTEF+NPW++ +IRVKK++ S  R RS SRSRSRSRSRS+SR R RS  R+    RS
Sbjct: 181 KLDDTEFRNPWARGFIRVKKYESSRSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLSRS 240

Query: 241 KSLERSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSP 292
           KS  + +S+SP RS S         +S SKS+SPS  + KSP +  SRS+SRSRSRSRSP
Sbjct: 241 KSPRKDLSKSPRRSLS---------RSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

[Close]

BLAST of Spo22282.1 vs. ExPASy Swiss-Prot
Match: SR34_ARATH (Serine/arginine-rich-splicing factor SR34 OS=Arabidopsis thaliana GN=SR34 PE=1 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 5.900e-75
Identity = 180/301 (59.80%), Postives = 218/301 (72.43%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+R SRT+YVGNLP DI+ERE+EDLF KYG +++++LKVPPRPP + FVEF+ ARDA++
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AI GRDGY+FDG RLRVELAHGGR S         GGG GGG G G  G R G SR +E+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSR-GPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT  EDMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWSKSYIRVKKHD-----RSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLE 240
           EF+N +S  Y+RV+++D     RSP RGRS S+SRSRSR RS SRSRSRS  R+RS    
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRS---- 240

Query: 241 RSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRS----RSRSRSRSP 293
                               PK++S  +SP+K  S+SP  P+S+SRS    RSRSRSRSP
Sbjct: 241 --------------------PKAKSSRRSPAKSTSRSPG-PRSKSRSPSPRRSRSRSRSP 275

[Close]

BLAST of Spo22282.1 vs. ExPASy Swiss-Prot
Match: SR34B_ARATH (Serine/arginine-rich splicing factor SR34B OS=Arabidopsis thaliana GN=SR34B PE=2 SV=1)

HSP 1 Score: 273.5 bits (698), Expect = 2.700e-72
Identity = 176/291 (60.48%), Postives = 209/291 (71.82%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+R SRTIYVGNLP DI+ERE+EDLF KYG +++++LK+PPRPP + FVEFE ARDAD+
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AI GRDGY+FDG  LRVELAHGGR S   A     G G GG GGG G G   G SR +EY
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT G+VDYT+ EDMKYA   LDDT
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EF+N +S  Y+RV+++D      R  SRS SR RS SKSRSR RSP R+RS+S  RS SR
Sbjct: 181 EFRNAFSHEYVRVREYD-----SRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSR 240

Query: 241 SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSP 292
           S              PK++S  +SP+K  S+SP     RSRSRS+SRS SP
Sbjct: 241 S--------------PKAKSLRRSPAKSTSRSP-----RSRSRSKSRSLSP 264

[Close]

BLAST of Spo22282.1 vs. ExPASy Swiss-Prot
Match: SR30_ARATH (Serine/arginine-rich splicing factor SR30 OS=Arabidopsis thaliana GN=SR30 PE=1 SV=1)

HSP 1 Score: 246.9 bits (629), Expect = 2.700e-64
Identity = 162/293 (55.29%), Postives = 202/293 (68.94%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+R++RTIYVGNLP DI++ E+EDLFYKYG I++++LK+PPRPP + FVEFE  RDAD+
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AI GRDGY+FDGCRLRVE+AHGGR    S                         SR ++Y
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRY-----------SSSYSASRAPSRRSDY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+N +DMKYAIRKLD T
Sbjct: 121 RVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDAT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRS-KSRSRSRSPKRNRSKSLERSVS 240
           EF+N +S +YIRV++++       SRS SRS   S+S +SRSRSR P  + S        
Sbjct: 181 EFRNAFSSAYIRVREYE-------SRSVSRSPDDSKSYRSRSRSRGPSCSYS-------- 240

Query: 241 RSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL 293
              S+SRS SP +S  P+SR  S+S S     S S+ QSRS+SRSRSRS SP+
Sbjct: 241 ---SKSRSVSPARSISPRSRPLSRSRS--LYSSVSRSQSRSKSRSRSRSNSPV 262

[Close]

BLAST of Spo22282.1 vs. ExPASy Swiss-Prot
Match: SRSF1_XENTR (Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis GN=srsf1 PE=2 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 2.100e-56
Identity = 148/254 (58.27%), Postives = 177/254 (69.69%), Query Frame = 1


		  
Query: 9   IYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADEAIRGRDGY 68
           IYVGNLP DI+ ++IED+FYKYG I +++LK     P F FVEFE  RDA++A+ GRDGY
Sbjct: 18  IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGY 77

Query: 69  NFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAG----------GRYG-ASRH 128
           ++DG RLRVE    GRG+G   G    GGGGGGGGGGGG G          GRYG  SR 
Sbjct: 78  DYDGYRLRVEFPRSGRGAGGRGGGGGGGGGGGGGGGGGGGGGGGGGGGAPRGRYGPPSRR 137

Query: 129 TEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKL 188
           +EYRV+V GLP S SWQDLKDHMR+AGDVC+A+V RD  GT G+V++   EDM YA+RKL
Sbjct: 138 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCYADVFRD--GT-GVVEFVRKEDMTYAVRKL 197

Query: 189 DDTEFK-NPWSKSYIRVK-KHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLE 248
           D+T+F+ +    +YIRVK    RSP  GRSRSRSRSRSRSRS+S SRSRS    RS+   
Sbjct: 198 DNTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNSRSRSYSPRRSRGSP 257

Query: 249 RSVSRSPSRSRSAS 250
           R    SP  SRS S
Sbjct: 258 R---YSPRHSRSRS 265

[Close]

BLAST of Spo22282.1 vs. TAIR (Arabidopsis)
Match: AT3G49430.1 (SER/ARG-rich protein 34A)

HSP 1 Score: 352.8 bits (904), Expect = 2.000e-97
Identity = 211/296 (71.28%), Postives = 248/296 (83.78%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS RFSR+IYVGNLP DI+E EIED+FYKYGRI+++ELKVPPRPPC+CFVEFE +RDA++
Sbjct: 1   MSGRFSRSIYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRPPCYCFVEFEHSRDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGG---GGGGGAGG--RYGAS 120
           AI+GRDGYN DGCRLRVELAHGGRG  SS   +RRGG GGGG   GGGGG GG  R+G S
Sbjct: 61  AIKGRDGYNLDGCRLRVELAHGGRGQSSS---DRRGGYGGGGSGYGGGGGGGGSARFGVS 120

Query: 121 RHTEYRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIR 180
           RH+E+RVIVRGLPSSASWQDLKDHMRKAGDVCFAEV+RDS+GT+G+VDYTN +DMKYAIR
Sbjct: 121 RHSEFRVIVRGLPSSASWQDLKDHMRKAGDVCFAEVTRDSDGTYGVVDYTNYDDMKYAIR 180

Query: 181 KLDDTEFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLE 240
           KLDDTEF+NPW++ +IRVKK++ S  R RSRS SRSRSRSRS+SRSR R    +RS+SL 
Sbjct: 181 KLDDTEFRNPWARGFIRVKKYESS--RSRSRSPSRSRSRSRSRSRSRGRGRSHSRSRSLS 240

Query: 241 RSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSP 292
           R  S+SP +  S SP +S   +S SKS+SPS  + KSP +  SRS+SRSRSRSRSP
Sbjct: 241 R--SKSPRKDLSKSPRRSL-SRSISKSRSPSPDKKKSPPRAMSRSKSRSRSRSRSP 288

[Close]

BLAST of Spo22282.1 vs. TAIR (Arabidopsis)
Match: AT1G02840.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 282.3 bits (721), Expect = 3.300e-76
Identity = 180/301 (59.80%), Postives = 218/301 (72.43%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+R SRT+YVGNLP DI+ERE+EDLF KYG +++++LKVPPRPP + FVEF+ ARDA++
Sbjct: 1   MSSRSSRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPPGYAFVEFDDARDAED 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AI GRDGY+FDG RLRVELAHGGR S         GGG GGG G G  G R G SR +E+
Sbjct: 61  AIHGRDGYDFDGHRLRVELAHGGRRSSDDTRGSFNGGGRGGGRGRGDGGSR-GPSRRSEF 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK GDVCF++V RD+ GT G+VDYT  EDMKYA++KLDDT
Sbjct: 121 RVLVTGLPSSASWQDLKDHMRKGGDVCFSQVYRDARGTTGVVDYTCYEDMKYALKKLDDT 180

Query: 181 EFKNPWSKSYIRVKKHD-----RSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLE 240
           EF+N +S  Y+RV+++D     RSP RGRS S+SRSRSR RS SRSRSRS  R+RS    
Sbjct: 181 EFRNAFSNGYVRVREYDSRKDSRSPSRGRSYSKSRSRSRGRSVSRSRSRSRSRSRS---- 240

Query: 241 RSVSRSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRS----RSRSRSRSP 293
                               PK++S  +SP+K  S+SP  P+S+SRS    RSRSRSRSP
Sbjct: 241 --------------------PKAKSSRRSPAKSTSRSPG-PRSKSRSPSPRRSRSRSRSP 275

[Close]

BLAST of Spo22282.1 vs. TAIR (Arabidopsis)
Match: AT4G02430.2 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 273.9 bits (699), Expect = 1.200e-73
Identity = 176/291 (60.48%), Postives = 209/291 (71.82%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+R SRTIYVGNLP DI+ERE+EDLF KYG +++++LK+PPRPP + FVEFE ARDAD+
Sbjct: 1   MSSRSSRTIYVGNLPGDIREREVEDLFSKYGPVVQIDLKIPPRPPGYAFVEFEDARDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AI GRDGY+FDG  LRVELAHGGR S   A     G G GG GGG G G   G SR +EY
Sbjct: 61  AIYGRDGYDFDGHHLRVELAHGGRRSSHDARGSYSGRGRGGRGGGDGGGRERGPSRRSEY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RV+V GLPSSASWQDLKDHMRK G+VCF++V RD  GT G+VDYT+ EDMKYA   LDDT
Sbjct: 121 RVVVSGLPSSASWQDLKDHMRKGGEVCFSQVFRDGRGTTGIVDYTSYEDMKYA---LDDT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRSKSRSRSRSPKRNRSKSLERSVSR 240
           EF+N +S  Y+RV+++D      R  SRS SR RS SKSRSR RSP R+RS+S  RS SR
Sbjct: 181 EFRNAFSHEYVRVREYD-----SRRDSRSPSRGRSYSKSRSRGRSPSRSRSRSRSRSKSR 240

Query: 241 SPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSP 292
           SP              K++S  +SP+K  S+SP     RSRSRS+SRS SP
Sbjct: 241 SP--------------KAKSLRRSPAKSTSRSP-----RSRSRSKSRSLSP 264

[Close]

BLAST of Spo22282.1 vs. TAIR (Arabidopsis)
Match: AT1G09140.1 (SERINE-ARGININE PROTEIN 30)

HSP 1 Score: 246.9 bits (629), Expect = 1.500e-65
Identity = 162/293 (55.29%), Postives = 202/293 (68.94%), Query Frame = 1


		  
Query: 1   MSNRFSRTIYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADE 60
           MS+R++RTIYVGNLP DI++ E+EDLFYKYG I++++LK+PPRPP + FVEFE  RDAD+
Sbjct: 1   MSSRWNRTIYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRPPGYAFVEFEDPRDADD 60

Query: 61  AIRGRDGYNFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGAGGRYGASRHTEY 120
           AI GRDGY+FDGCRLRVE+AHGGR    S                         SR ++Y
Sbjct: 61  AIYGRDGYDFDGCRLRVEIAHGGRRFSPSVDRY-----------SSSYSASRAPSRRSDY 120

Query: 121 RVIVRGLPSSASWQDLKDHMRKAGDVCFAEVSRDSEGTFGLVDYTNSEDMKYAIRKLDDT 180
           RV+V GLP SASWQDLKDHMRKAGDVCF+EV  D +G  G+VDY+N +DMKYAIRKLD T
Sbjct: 121 RVLVTGLPPSASWQDLKDHMRKAGDVCFSEVFPDRKGMSGVVDYSNYDDMKYAIRKLDAT 180

Query: 181 EFKNPWSKSYIRVKKHDRSPIRGRSRSRSRSRSRSRS-KSRSRSRSPKRNRSKSLERSVS 240
           EF+N +S +YIRV++++       SRS SRS   S+S +SRSRSR P  + S        
Sbjct: 181 EFRNAFSSAYIRVREYE-------SRSVSRSPDDSKSYRSRSRSRGPSCSYS-------- 240

Query: 241 RSPSRSRSASPVKSTRPKSRSKSKSPSKPRSKSPSKPQSRSRSRSRSRSRSPL 293
              S+SRS SP +S  P+SR  S+S S     S S+ QSRS+SRSRSRS SP+
Sbjct: 241 ---SKSRSVSPARSISPRSRPLSRSRS--LYSSVSRSQSRSKSRSRSRSNSPV 262

[Close]

BLAST of Spo22282.1 vs. TAIR (Arabidopsis)
Match: AT4G31580.1 (serine/arginine-rich 22)

HSP 1 Score: 60.8 bits (146), Expect = 1.600e-9
Identity = 47/100 (47.00%), Postives = 58/100 (58.00%), Query Frame = 1


		  
Query: 9   IYVGNLPSDIKEREIEDLFYKYGRILEVELKVPPRPPCFCFVEFEGARDADEAIRGRDGY 68
           +YVGNL   + ERE+ED F  +G +  V   V  RPP + F++FE  RDA +AIR  DG 
Sbjct: 4   VYVGNLDPRVTERELEDEFRAFGVVRSVW--VARRPPGYAFLDFEDPRDARDAIRALDGK 63

Query: 69  NFDGCRLRVELAHGGRGSGSSAGSERRGGGGGGGGGGGGA 109
           N  G R+      G RG G   G   RGGGGGG GG GG+
Sbjct: 64  N--GWRVEQSHNRGERGGGGRGGD--RGGGGGGRGGRGGS 97

The following BLAST results are available for this feature:

BLAST of Spo22282.1 vs. NCBI nr
BLAST of Spo22282.1 vs. UniProtKB/TrEMBL
BLAST of Spo22282.1 vs. ExPASy Swiss-Prot
BLAST of Spo22282.1 vs. TAIR (Arabidopsis)

BLAST of Spo22282.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902099826\|gb\|KNA03491.1\|	4.1e-145	100.	hypothetical protein SOVF_2087...	[more]
gi\|778698631\|ref\|XP_011654574.1\|	4.2e-105	77.9	PREDICTED: serine/arginine-ric...	[more]
gi\|661891111\|emb\|CDP04993.1\|	5.1e-103	75.9	unnamed protein product [Coffe...	[more]
gi\|743900779\|ref\|XP_011043695.1\|	1.1e-102	77.5	PREDICTED: serine/arginine-ric...	[more]
gi\|743900781\|ref\|XP_011043696.1\|	1.1e-102	77.5	PREDICTED: serine/arginine-ric...	[more]

BLAST of Spo22282.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QAD1_SPIOL	2.9e-145	100.	Uncharacterized protein OS=Spi...	[more]
A0A0A0KLR9_CUCSA	2.9e-105	77.9	Uncharacterized protein OS=Cuc...	[more]
A0A068UBH5_COFCA	3.5e-103	75.9	Uncharacterized protein OS=Cof...	[more]
A0A0M9UMT5_NICAT	3.5e-103	77.8	Serine/arginine-rich-splicing ...	[more]
A0A0J8B8Y6_BETVU	1.0e-102	78.1	Uncharacterized protein OS=Bet...	[more]

BLAST of Spo22282.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
SR34A_ARATH	2.7e-96	70.0	Serine/arginine-rich splicing ...	[more]
SR34_ARATH	5.9e-75	59.8	Serine/arginine-rich-splicing ...	[more]
SR34B_ARATH	2.7e-72	60.4	Serine/arginine-rich splicing ...	[more]
SR30_ARATH	2.7e-64	55.2	Serine/arginine-rich splicing ...	[more]
SRSF1_XENTR	2.1e-56	58.2	Serine/arginine-rich splicing ...	[more]

BLAST of Spo22282.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT3G49430.1	2.0e-97	71.2	SER/ARG-rich protein 34A	[more]
AT1G02840.1	3.3e-76	59.8	RNA-binding (RRM/RBD/RNP motif...	[more]
AT4G02430.2	1.2e-73	60.4	RNA-binding (RRM/RBD/RNP motif...	[more]
AT1G09140.1	1.5e-65	55.2	SERINE-ARGININE PROTEIN 30	[more]
AT4G31580.1	1.6e-9	47.0	serine/arginine-rich 22	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 122..184 score: 2.5E-12coord: 9..76 score: 2.8
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 8..78 score: 6.8E-20coord: 121..194 score: 8.
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 120..198 score: 10.991coord: 7..82 score: 1
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	3.30.70.330		coord: 116..210 score: 2.8E-27coord: 2..88 score: 5.7
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 6..188 score: 2.57
None	No IPR available	PANTHER	PTHR24012	FAMILY NOT NAMED	coord: 6..80 score: 2.9E-33coord: 119..202 score: 2.9E-33coord: 283..291 score: 2.9

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
biological_process	GO:0007389	pattern specification process
biological_process	GO:0009664	plant-type cell wall organization
biological_process	GO:0042545	cell wall modification
biological_process	GO:0048653	anther development
biological_process	GO:0010015	root morphogenesis
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0008361	regulation of cell size
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0009926	auxin polar transport
biological_process	GO:0008356	asymmetric cell division
biological_process	GO:0006626	protein targeting to mitochondrion
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0031225	anchored component of membrane
molecular_function	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003676	nucleic acid binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo21068	0.71	Barchart \| Table
Spo01088	0.70	Barchart \| Table
Spo24902	0.70	Barchart \| Table
Spo03527	0.68	Barchart \| Table
Spo11288	0.68	Barchart \| Table
Spo11850	0.66	Barchart \| Table