Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTCTCAAATCGACATCAAATCACCAAAACATTGCGCCAACAAACGTTTCCACTTCAATAAAAAGCTCTTCAAAATCATCTCAACACTCATATTCTCAATCCTCTCATTAACCCTTCTAATTTGGTTCCTCCTCCACCCTTCAAACCCTCAATTCATCCTCCAAGAACTCGACATCTACCAACTCAATTTCACGTCCCCTCACGTGCTCAACTCCTCCCTCGAAATCACCTTAGAAGCAAGAAACCCGAACCAAAAGGTTGGAATTTACTACGACGAGTTACAAGCTTATGCATCCTACAAAAGACAGCAAATTACACTAGACACCTCAATTCCTCCTTATTACCAAGGACAACAAGATAGTAACTTGATATCGGCTTCTCTCGTTGGAAACGGCCTCCCTGTGTCTCCTTCCCTCGGTTATGAACTTGGTCGTGATCAAGCTTCCGGGAAGATGATATTAGTCGTAAAGCTTGATGGACGCATAAGATGGAAGGTTGCGAGTTGGGTTTCGGGAAGATATCGGATAAATGTTAAGTGTGTGACAATTCTGCCTCTTACACCATTTAATCCAAGAGGGTATATGAATTCTAGGCAGGGGACTCAATGCTCTACCAACTTATAG ATGTCTCAAATCGACATCAAATCACCAAAACATTGCGCCAACAAACGTTTCCACTTCAATAAAAAGCTCTTCAAAATCATCTCAACACTCATATTCTCAATCCTCTCATTAACCCTTCTAATTTGGTTCCTCCTCCACCCTTCAAACCCTCAATTCATCCTCCAAGAACTCGACATCTACCAACTCAATTTCACGTCCCCTCACGTGCTCAACTCCTCCCTCGAAATCACCTTAGAAGCAAGAAACCCGAACCAAAAGGTTGGAATTTACTACGACGAGTTACAAGCTTATGCATCCTACAAAAGACAGCAAATTACACTAGACACCTCAATTCCTCCTTATTACCAAGGACAACAAGATAGTAACTTGATATCGGCTTCTCTCGTTGGAAACGGCCTCCCTGTGTCTCCTTCCCTCGGTTATGAACTTGGTCGTGATCAAGCTTCCGGGAAGATGATATTAGTCGTAAAGCTTGATGGACGCATAAGATGGAAGGTTGCGAGTTGGGTTTCGGGAAGATATCGGATAAATGTTAAGTGTGTGACAATTCTGCCTCTTACACCATTTAATCCAAGAGGGTATATGAATTCTAGGCAGGGGACTCAATGCTCTACCAACTTATAG ATGTCTCAAATCGACATCAAATCACCAAAACATTGCGCCAACAAACGTTTCCACTTCAATAAAAAGCTCTTCAAAATCATCTCAACACTCATATTCTCAATCCTCTCATTAACCCTTCTAATTTGGTTCCTCCTCCACCCTTCAAACCCTCAATTCATCCTCCAAGAACTCGACATCTACCAACTCAATTTCACGTCCCCTCACGTGCTCAACTCCTCCCTCGAAATCACCTTAGAAGCAAGAAACCCGAACCAAAAGGTTGGAATTTACTACGACGAGTTACAAGCTTATGCATCCTACAAAAGACAGCAAATTACACTAGACACCTCAATTCCTCCTTATTACCAAGGACAACAAGATAGTAACTTGATATCGGCTTCTCTCGTTGGAAACGGCCTCCCTGTGTCTCCTTCCCTCGGTTATGAACTTGGTCGTGATCAAGCTTCCGGGAAGATGATATTAGTCGTAAAGCTTGATGGACGCATAAGATGGAAGGTTGCGAGTTGGGTTTCGGGAAGATATCGGATAAATGTTAAGTGTGTGACAATTCTGCCTCTTACACCATTTAATCCAAGAGGGTATATGAATTCTAGGCAGGGGACTCAATGCTCTACCAACTTATAG MSQIDIKSPKHCANKRFHFNKKLFKIISTLIFSILSLTLLIWFLLHPSNPQFILQELDIYQLNFTSPHVLNSSLEITLEARNPNQKVGIYYDELQAYASYKRQQITLDTSIPPYYQGQQDSNLISASLVGNGLPVSPSLGYELGRDQASGKMILVVKLDGRIRWKVASWVSGRYRINVKCVTILPLTPFNPRGYMNSRQGTQCSTNL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22293.1 vs. NCBI nr
Match: gi|902175626|gb|KNA08633.1| (hypothetical protein SOVF_160880 [Spinacia oleracea]) HSP 1 Score: 417.9 bits (1073), Expect = 1.000e-113 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1
BLAST of Spo22293.1 vs. NCBI nr
Match: gi|870865430|gb|KMT16486.1| (hypothetical protein BVRB_3g051040 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 329.7 bits (844), Expect = 3.600e-87 Identity = 161/210 (76.67%), Postives = 184/210 (87.62%), Query Frame = 1
BLAST of Spo22293.1 vs. NCBI nr
Match: gi|661891105|emb|CDP04987.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 278.1 bits (710), Expect = 1.300e-71 Identity = 131/213 (61.50%), Postives = 165/213 (77.46%), Query Frame = 1
BLAST of Spo22293.1 vs. NCBI nr
Match: gi|526118236|ref|NP_001267966.1| (NDR1/HIN1-like protein [Vitis vinifera]) HSP 1 Score: 274.2 bits (700), Expect = 1.800e-70 Identity = 126/210 (60.00%), Postives = 168/210 (80.00%), Query Frame = 1
BLAST of Spo22293.1 vs. NCBI nr
Match: gi|719964025|ref|XP_010251416.1| (PREDICTED: protein YLS9 [Nelumbo nucifera]) HSP 1 Score: 269.6 bits (688), Expect = 4.500e-69 Identity = 125/210 (59.52%), Postives = 166/210 (79.05%), Query Frame = 1
BLAST of Spo22293.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QPL8_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_160880 PE=4 SV=1) HSP 1 Score: 417.9 bits (1073), Expect = 7.100e-114 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 1
BLAST of Spo22293.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FKP7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g051040 PE=4 SV=1) HSP 1 Score: 329.7 bits (844), Expect = 2.500e-87 Identity = 161/210 (76.67%), Postives = 184/210 (87.62%), Query Frame = 1
BLAST of Spo22293.1 vs. UniProtKB/TrEMBL
Match: A0A068U9K8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00019878001 PE=4 SV=1) HSP 1 Score: 278.1 bits (710), Expect = 8.700e-72 Identity = 131/213 (61.50%), Postives = 165/213 (77.46%), Query Frame = 1
BLAST of Spo22293.1 vs. UniProtKB/TrEMBL
Match: F6H772_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00890 PE=4 SV=1) HSP 1 Score: 275.8 bits (704), Expect = 4.300e-71 Identity = 126/210 (60.00%), Postives = 169/210 (80.48%), Query Frame = 1
BLAST of Spo22293.1 vs. UniProtKB/TrEMBL
Match: B2KL74_VITVI (NDR1/HIN1-like protein OS=Vitis vinifera PE=2 SV=1) HSP 1 Score: 274.2 bits (700), Expect = 1.300e-70 Identity = 126/210 (60.00%), Postives = 168/210 (80.00%), Query Frame = 1
BLAST of Spo22293.1 vs. ExPASy Swiss-Prot
Match: NHL12_ARATH (NDR1/HIN1-like protein 12 OS=Arabidopsis thaliana GN=NHL12 PE=2 SV=1) HSP 1 Score: 152.5 bits (384), Expect = 5.000e-36 Identity = 66/161 (40.99%), Postives = 107/161 (66.46%), Query Frame = 1
BLAST of Spo22293.1 vs. ExPASy Swiss-Prot
Match: NHL3_ARATH (NDR1/HIN1-Like protein 3 OS=Arabidopsis thaliana GN=NHL3 PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 4.100e-14 Identity = 48/185 (25.95%), Postives = 93/185 (50.27%), Query Frame = 1
BLAST of Spo22293.1 vs. ExPASy Swiss-Prot
Match: YLS9_ARATH (Protein YLS9 OS=Arabidopsis thaliana GN=YLS9 PE=2 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 9.100e-14 Identity = 46/169 (27.22%), Postives = 95/169 (56.21%), Query Frame = 1
BLAST of Spo22293.1 vs. TAIR (Arabidopsis)
Match: AT5G53730.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 211.8 bits (538), Expect = 3.900e-55 Identity = 103/213 (48.36%), Postives = 147/213 (69.01%), Query Frame = 1
BLAST of Spo22293.1 vs. TAIR (Arabidopsis)
Match: AT3G44220.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 159.5 bits (402), Expect = 2.300e-39 Identity = 73/180 (40.56%), Postives = 114/180 (63.33%), Query Frame = 1
BLAST of Spo22293.1 vs. TAIR (Arabidopsis)
Match: AT3G11660.1 (NDR1/HIN1-like 1) HSP 1 Score: 158.3 bits (399), Expect = 5.100e-39 Identity = 76/176 (43.18%), Postives = 116/176 (65.91%), Query Frame = 1
BLAST of Spo22293.1 vs. TAIR (Arabidopsis)
Match: AT2G35960.1 (NDR1/HIN1-like 12) HSP 1 Score: 152.5 bits (384), Expect = 2.800e-37 Identity = 66/161 (40.99%), Postives = 107/161 (66.46%), Query Frame = 1
BLAST of Spo22293.1 vs. TAIR (Arabidopsis)
Match: AT5G22200.1 (Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family) HSP 1 Score: 149.8 bits (377), Expect = 1.800e-36 Identity = 65/158 (41.14%), Postives = 105/158 (66.46%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22293.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22293.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22293.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo22293.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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