Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTGACGTCCAATTTGAAAATAACTAAAGATCTGACAGATAGATATACATTATCTTTATCAAGTACGTACATCTCATAATTCAAGAACCACCCGATAGTCCATTATCGCCATCCCGCGCTCTAATAAATAAAAAAAAAAGTTCGCTTTTCGAGAAAATACGAGAAGCAAACAAAAAGGTCGATTAGTTGGACAAATCCACATGGCAGCCAGTCACAATAGCACTTCTTTTCGTCATCAAATTCTCACCACCACCTCACACAGCACACACACATACACCCACACACCAAATTCATTCATCTATAAATTAGCTTCCTTTGCTTCATTGGTTTCCTCCCTTCTTTTCCCCAATCTCTAGCTTATTAAAAAAAACAGTTTCTCTGTAAATGAGCATTCCGCTATTAGCATCTAAATCCCGGTTTAAGTAGTTAGTTGCATTGCATGTGCTTTGGAATCACAAACCAGCTTTTCTTTATAAAATTTATCATAAACAAAGCTGCTCTGCATTGCAGAATTGCATGCACCGCCCATTTTTCATTCAAATCTCAAACTACTTTCTATAAATAAATCTACATTTTCTTCTACTCTGTTTCTCCAATTCCCAATTTAGAATTTACTACATTTTCTTAAGATTCTGAATTTCAGATTAACCAATAATGGGTGAAGAAACTAAGCCAGTAAGTGTGCAATGAATTATGAGCAATATATTATATATATGATTGGTTTGATTTTCCAAAGTTTCAGGAAATGGGTTTTGTTATTTGATGAATTTAATGAACTGGGTTTATTATTGTTTTTCTTTTTGCTGACTTAATTTGATTTATTTATTGTAGGAAGAACAAGCTCCACCTGAGAACAAGCCAGAAGAGAAACCTGCAGAAGAGAAGAAAGAAGATAACCCACCACCACCACCGCCACCAGCCGAAGAAGAGAAACCTCCAGCCGAGGAAGAAAAGAAGGAAGAAGAACCACCACAACCACCACCACCGCCGCCACCTTTTGTTCTCTATGTGGACTTACATTGTGTTGGATGTGCTAAGAAAATTGAACGGTCCATCATGAAAATTAGAGGTCTATATATATATTAATTCTTTACGTGTTCCGTTATGGGAAAAATTGTGTTACTAACACATAAAAATTATTGTTGTTATTGTTATGGTAAACAGGAGTTGAAGGGGTGGTAATTGACATGGGTAAAAATCAGGTAACAATAAAAGGAGTGGTGGAGCCACAAGCAATATGTAATAAGATAATGAAGAAAACAAAGAGGAAGGCTAAGGTTTTGTCACCTTTACCTGCAAATGAAGGTGAACCCATACCTGAAGTTGTCACTTCACAGGTGAATTTTCATGGCATACCTAACTAACTAATCACACTCATTATATTAGTCATTGTATTACACCCTTAATTAAAAAGGTTTTTAGTTTTTTAATGTAAAATCAATTATTAATAAAAAGTCATACGACATCTACGTACAACAGGAATCGAAATTAACAAATACATAATAAATTGAATCAAAAAGATCGTTGGGAAGATCTTGCACTGTGGGACATCTCTCGCAAATATCGCTGGAACATATAGCCTTTTCGGAGAGACGGTCTAACGATTTGTTGTAGGTATTGGAGGCCGTGAAAAAAAATTAACCGGGAACGGAATAATTGTGCAGGTTAGTGGATTGACTACAGTGGAGCTTAGTGTAAATATGCACTGTGAAGCATGTGCTGGACAACTCAAGAAGAAAATACTCAAAATGAGAGGTAAATACATGGAGTATCACTCAAAATTAATATGCAAGCCATTAATTTATTTATTTTTTAATAGAAAAGAAAACTTAGACGGATTATCTAAAACATAATTTTGAATGAAGTACAATGACTCTAGACAAATGAATATGCAAGCCATTATTGATTGCTTTTATTTTTTACCTTTCTTTGTTGGAGCAGGATGAAATATGTCCTGTATATTCTTTTTTTACTTCTATAAAAGTATTCAATAGTGTAATTATGATAAGCGGAGTAAATTATTGCTTGTAATTTTCTGTAACATTATGTCAATCTTTCTGACCATGTGATCACTTTTGTCCCACTTTATAAAGTTCTGCAAAAATTTCCTGCAAAAAAAATCCCCACCAAAAAGAAAAGAAAATAAAATTTCTTAGTTTCTTTTTTGAAAAATTTCAGCCTTATTGCAAAAAAATAAAAAATATATATTCTGCATTATATTTTGCTGAGTTAGCTAGGGCCAAACACATGTTCAATCCCGGACCGGGTTGACCCGAGAAGAGTTCCAGCTCTATAAACACCTCATCTTACCTTAAAAAAAAATGTTCAATGGTTCATACACCAAAAATAATCGTGAAAGTCGGAAGGATTGAGGTTCAAAAGGCACATGACCTAGCTAGAACTTTTAGATTATATGGTACTAGTAACACTTAATTAGTAATTGCAGCATTTGTCAAAAAAAAAAAAAAATTAAAAAAAAAAAACTTTCAATTGTGGTTGGAAAAAAATGGTACTCTCTTCGTCCCTAATTAGTTCAATTCGTGATGACTTAATAACAAAGAATCGGTAAATTAAAGTTGTATTTACATAAAAAGTAGTGCACATTATTTAAAAATTAAGATTACGCGACCTTTATCTTTTAATAAGGTTACTTATATTTGAACTTTTGTTAGACTTATGTTTTTAGTTAAACGAGACTAATGCTGGATCCTGGATTCATGTTATTGCAGGGGTACAATCAGTAGAAACTGAGCTAAGTAGTGAGAAGGTCATAGTAACGGGTACAATGGACGCAAACAAGTTGGTAGAGTATGTGTATAGACGTACCAAAAAGACAGCCAAAATAGTCCCACAACCCGAACCCGAGAAACCGGCCGAAGACCCGCCCAAGCCCGAGGAAGCGGCCGAGAAGCCCCCGGAAGAGCCTAAACCCGAGGAAGCGAAAGAAGAACAAAAGGAAGGAGGTGATGAAGGTAAGCCACCAGCTGAAGGCGGCGGCGGCGGCAGCGGCGAAGGCGGTGGTGAAAACAAACAAGGAGAGCCTAACAAAGGAGAAGGTGAAGGAGTTGTTGAAGAAGTGATTCAACCAATAAATTACATTGAAGAAGAATCAATGAAAAGGATGATGTATAGTAATTACTATAATTACCAGCAACCTCTGTATGTGATTGAAAGAATCCCACCACCACAGTTGTTTAGTGATGAGAATCCAAATGCATGTTGCATTTCTTAACCCTTAATTAATTCAAAAAAGAGTAATTAAGAGATATAATTAAGTGATAATGGATCTATCATCAATCTAATTAATAAAAAAAAGTTTGAACTTATAATAATTTATTGATTTTTGTATGATATTATTATAAGTTCAAACAAATATAATAGAGATTTATTATATTACTGCCACATGATGAAATGAGAATATAGAGAACTTTGTTGGATTGTTGTCATAAAGTGTTAATTTTTAATTAATTAATATACTTATATTGTAATTAATCAATTAATATAAATTCAAATTAATTGTACTTGTTTTATTCTGTTATATAATTGGGGGATTGTTCTGAACTGAGAGTTTATGCTCCAGAAACTCTAACTTCAATGCTCATGATAATGTATGTGTGTGGGGCGG CTGACGTCCAATTTGAAAATAACTAAAGATCTGACAGATAGATATACATTATCTTTATCAAGTACGTACATCTCATAATTCAAGAACCACCCGATAGTCCATTATCGCCATCCCGCGCTCTAATAAATAAAAAAAAAAGTTCGCTTTTCGAGAAAATACGAGAAGCAAACAAAAAGGTCGATTAGTTGGACAAATCCACATGGCAGCCAGTCACAATAGCACTTCTTTTCGTCATCAAATTCTCACCACCACCTCACACAGCACACACACATACACCCACACACCAAATTCATTCATCTATAAATTAGCTTCCTTTGCTTCATTGGTTTCCTCCCTTCTTTTCCCCAATCTCTAGCTTATTAAAAAAAACAGTTTCTCTGTAAATGAGCATTCCGCTATTAGCATCTAAATCCCGGTTTAAGTAGTTAGTTGCATTGCATGTGCTTTGGAATCACAAACCAGCTTTTCTTTATAAAATTTATCATAAACAAAGCTGCTCTGCATTGCAGAATTGCATGCACCGCCCATTTTTCATTCAAATCTCAAACTACTTTCTATAAATAAATCTACATTTTCTTCTACTCTGTTTCTCCAATTCCCAATTTAGAATTTACTACATTTTCTTAAGATTCTGAATTTCAGATTAACCAATAATGGGTGAAGAAACTAAGCCAGAAGAACAAGCTCCACCTGAGAACAAGCCAGAAGAGAAACCTGCAGAAGAGAAGAAAGAAGATAACCCACCACCACCACCGCCACCAGCCGAAGAAGAGAAACCTCCAGCCGAGGAAGAAAAGAAGGAAGAAGAACCACCACAACCACCACCACCGCCGCCACCTTTTGTTCTCTATGTGGACTTACATTGTGTTGGATGTGCTAAGAAAATTGAACGGTCCATCATGAAAATTAGAGGAGTTGAAGGGGTGGTAATTGACATGGGTAAAAATCAGGTAACAATAAAAGGAGTGGTGGAGCCACAAGCAATATGTAATAAGATAATGAAGAAAACAAAGAGGAAGGCTAAGGTTTTGTCACCTTTACCTGCAAATGAAGGTGAACCCATACCTGAAGTTGTCACTTCACAGGTTAGTGGATTGACTACAGTGGAGCTTAGTGTAAATATGCACTGTGAAGCATGTGCTGGACAACTCAAGAAGAAAATACTCAAAATGAGAGGGGTACAATCAGTAGAAACTGAGCTAAGTAGTGAGAAGGTCATAGTAACGGGTACAATGGACGCAAACAAGTTGGTAGAGTATGTGTATAGACGTACCAAAAAGACAGCCAAAATAGTCCCACAACCCGAACCCGAGAAACCGGCCGAAGACCCGCCCAAGCCCGAGGAAGCGGCCGAGAAGCCCCCGGAAGAGCCTAAACCCGAGGAAGCGAAAGAAGAACAAAAGGAAGGAGGTGATGAAGGTAAGCCACCAGCTGAAGGCGGCGGCGGCGGCAGCGGCGAAGGCGGTGGTGAAAACAAACAAGGAGAGCCTAACAAAGGAGAAGGTGAAGGAGTTGTTGAAGAAGTGATTCAACCAATAAATTACATTGAAGAAGAATCAATGAAAAGGATGATGTATAGTAATTACTATAATTACCAGCAACCTCTGTATGTGATTGAAAGAATCCCACCACCACAGTTGTTTAGTGATGAGAATCCAAATGCATGTTGCATTTCTTAACCCTTAATTAATTCAAAAAAGAGTAATTAAGAGATATAATTAAGTGATAATGGATCTATCATCAATCTAATTAATAAAAAAAAGTTTGAACTTATAATAATTTATTGATTTTTGTATGATATTATTATAAGTTCAAACAAATATAATAGAGATTTATTATATTACTGCCACATGATGAAATGAGAATATAGAGAACTTTGTTGGATTGTTGTCATAAAGTGTTAATTTTTAATTAATTAATATACTTATATTGTAATTAATCAATTAATATAAATTCAAATTAATTGTACTTGTTTTATTCTGTTATATAATTGGGGGATTGTTCTGAACTGAGAGTTTATGCTCCAGAAACTCTAACTTCAATGCTCATGATAATGTATGTGTGTGGGGCGG ATGGGTGAAGAAACTAAGCCAGAAGAACAAGCTCCACCTGAGAACAAGCCAGAAGAGAAACCTGCAGAAGAGAAGAAAGAAGATAACCCACCACCACCACCGCCACCAGCCGAAGAAGAGAAACCTCCAGCCGAGGAAGAAAAGAAGGAAGAAGAACCACCACAACCACCACCACCGCCGCCACCTTTTGTTCTCTATGTGGACTTACATTGTGTTGGATGTGCTAAGAAAATTGAACGGTCCATCATGAAAATTAGAGGAGTTGAAGGGGTGGTAATTGACATGGGTAAAAATCAGGTAACAATAAAAGGAGTGGTGGAGCCACAAGCAATATGTAATAAGATAATGAAGAAAACAAAGAGGAAGGCTAAGGTTTTGTCACCTTTACCTGCAAATGAAGGTGAACCCATACCTGAAGTTGTCACTTCACAGGTTAGTGGATTGACTACAGTGGAGCTTAGTGTAAATATGCACTGTGAAGCATGTGCTGGACAACTCAAGAAGAAAATACTCAAAATGAGAGGGGTACAATCAGTAGAAACTGAGCTAAGTAGTGAGAAGGTCATAGTAACGGGTACAATGGACGCAAACAAGTTGGTAGAGTATGTGTATAGACGTACCAAAAAGACAGCCAAAATAGTCCCACAACCCGAACCCGAGAAACCGGCCGAAGACCCGCCCAAGCCCGAGGAAGCGGCCGAGAAGCCCCCGGAAGAGCCTAAACCCGAGGAAGCGAAAGAAGAACAAAAGGAAGGAGGTGATGAAGGTAAGCCACCAGCTGAAGGCGGCGGCGGCGGCAGCGGCGAAGGCGGTGGTGAAAACAAACAAGGAGAGCCTAACAAAGGAGAAGGTGAAGGAGTTGTTGAAGAAGTGATTCAACCAATAAATTACATTGAAGAAGAATCAATGAAAAGGATGATGTATAGTAATTACTATAATTACCAGCAACCTCTGTATGTGATTGAAAGAATCCCACCACCACAGTTGTTTAGTGATGAGAATCCAAATGCATGTTGCATTTCTTAA MGEETKPEEQAPPENKPEEKPAEEKKEDNPPPPPPPAEEEKPPAEEEKKEEEPPQPPPPPPPFVLYVDLHCVGCAKKIERSIMKIRGVEGVVIDMGKNQVTIKGVVEPQAICNKIMKKTKRKAKVLSPLPANEGEPIPEVVTSQVSGLTTVELSVNMHCEACAGQLKKKILKMRGVQSVETELSSEKVIVTGTMDANKLVEYVYRRTKKTAKIVPQPEPEKPAEDPPKPEEAAEKPPEEPKPEEAKEEQKEGGDEGKPPAEGGGGGSGEGGGENKQGEPNKGEGEGVVEEVIQPINYIEEESMKRMMYSNYYNYQQPLYVIERIPPPQLFSDENPNACCIS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22388.1 vs. NCBI nr
Match: gi|902196280|gb|KNA13094.1| (hypothetical protein SOVF_119880 [Spinacia oleracea]) HSP 1 Score: 625.5 bits (1612), Expect = 5.300e-176 Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 1
BLAST of Spo22388.1 vs. NCBI nr
Match: gi|731321352|ref|XP_010671306.1| (PREDICTED: titin isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 481.5 bits (1238), Expect = 1.200e-132 Identity = 293/348 (84.20%), Postives = 302/348 (86.78%), Query Frame = 1
BLAST of Spo22388.1 vs. NCBI nr
Match: gi|731321350|ref|XP_010671305.1| (PREDICTED: titin isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 476.5 bits (1225), Expect = 4.000e-131 Identity = 293/350 (83.71%), Postives = 302/350 (86.29%), Query Frame = 1
BLAST of Spo22388.1 vs. NCBI nr
Match: gi|225455185|ref|XP_002269275.1| (PREDICTED: triadin [Vitis vinifera]) HSP 1 Score: 362.5 bits (929), Expect = 8.300e-97 Identity = 229/343 (66.76%), Postives = 261/343 (76.09%), Query Frame = 1
BLAST of Spo22388.1 vs. NCBI nr
Match: gi|147841172|emb|CAN62004.1| (hypothetical protein VITISV_005689 [Vitis vinifera]) HSP 1 Score: 362.5 bits (929), Expect = 8.300e-97 Identity = 229/343 (66.76%), Postives = 261/343 (76.09%), Query Frame = 1
BLAST of Spo22388.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R2B9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_119880 PE=4 SV=1) HSP 1 Score: 625.5 bits (1612), Expect = 3.700e-176 Identity = 341/341 (100.00%), Postives = 341/341 (100.00%), Query Frame = 1
BLAST of Spo22388.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWX3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050800 PE=4 SV=1) HSP 1 Score: 481.5 bits (1238), Expect = 8.600e-133 Identity = 293/348 (84.20%), Postives = 302/348 (86.78%), Query Frame = 1
BLAST of Spo22388.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWI3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050800 PE=4 SV=1) HSP 1 Score: 476.5 bits (1225), Expect = 2.800e-131 Identity = 293/350 (83.71%), Postives = 302/350 (86.29%), Query Frame = 1
BLAST of Spo22388.1 vs. UniProtKB/TrEMBL
Match: A5C1P9_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_005689 PE=4 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 5.800e-97 Identity = 229/343 (66.76%), Postives = 261/343 (76.09%), Query Frame = 1
BLAST of Spo22388.1 vs. UniProtKB/TrEMBL
Match: F6H787_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0098g00790 PE=4 SV=1) HSP 1 Score: 362.5 bits (929), Expect = 5.800e-97 Identity = 229/343 (66.76%), Postives = 261/343 (76.09%), Query Frame = 1
BLAST of Spo22388.1 vs. ExPASy Swiss-Prot
Match: HIP3_ARATH (Heavy metal-associated isoprenylated plant protein 3 OS=Arabidopsis thaliana GN=HIPP3 PE=1 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 5.100e-22 Identity = 98/322 (30.43%), Postives = 147/322 (45.65%), Query Frame = 1
BLAST of Spo22388.1 vs. TAIR (Arabidopsis)
Match: AT5G24580.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 327.4 bits (838), Expect = 1.000e-89 Identity = 224/354 (63.28%), Postives = 253/354 (71.47%), Query Frame = 1
BLAST of Spo22388.1 vs. TAIR (Arabidopsis)
Match: AT5G63530.1 (farnesylated protein 3) HSP 1 Score: 140.2 bits (352), Expect = 2.400e-33 Identity = 144/376 (38.30%), Postives = 191/376 (50.80%), Query Frame = 1
BLAST of Spo22388.1 vs. TAIR (Arabidopsis)
Match: AT5G50740.3 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 137.1 bits (344), Expect = 2.000e-32 Identity = 120/336 (35.71%), Postives = 172/336 (51.19%), Query Frame = 1
BLAST of Spo22388.1 vs. TAIR (Arabidopsis)
Match: AT5G60800.2 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 106.7 bits (265), Expect = 2.900e-23 Identity = 98/322 (30.43%), Postives = 147/322 (45.65%), Query Frame = 1
BLAST of Spo22388.1 vs. TAIR (Arabidopsis)
Match: AT2G28090.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 95.5 bits (236), Expect = 6.700e-20 Identity = 63/186 (33.87%), Postives = 102/186 (54.84%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22388.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22388.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22388.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo22388.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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