Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTAGGTCACGTGACCCAGGAATTTTTTGGGAAAAAATTTTAAAAAAAATCACCCAAAAATGTTCAGACCTATTTCGCGTAACACCTACTCCTCTCCTCCTCTGCTCCCCACAGCGCCGCCCAGGCTGCCCACTTGCCCAGCCCTCAGCCGTCACCGTCACCGGTACTTAGGTCCACCAATGTGACCGGCTCACAGGTCCACCACCGTCACCAGCTCTGCGTCTCAGCTCACCGCGCGCCCAGCCGCCCACTACGACGTAGTCTACCGTCTACAAGAAGCTGAACTGCCGTCTGCTGAAGCTCCGCCGGACCGCCCCTCACCATTCACCATTCTTCAAGGACTCAAGGTTGGTCTTTAATTGCTTCATGTTTATGTTTTATTGCAATTTAGGATTGATTTCTCATGTTAATTAGTAAACTTCCAATTATTGGTGATTGGAATTGAGAGATTAGTATTATTATGAGACTGATTCTTAAGTTTTCCATTAAACATCTGAATTATTTATTAATCATGCTCTTTATTCGTTAATTAGAGCCATGATTATGTTTTATATCGTGGAATTTGGACTCTGGTTCTGAAACTAGTGTATTCTTTTTATCAAATTGAAACAATCTGGGAAAAAAAATCTACAATTACAGAGCGAAGAAATACTTTAAAAGCTTGTTCAGTTTGAAGTCTCAAAAACATTTGTTCGTTTTGTATAATGATCAAAAGTGATTAATTTAGTGCCTGCGTGAAATAAAATAAATTGATTAACAGAGAGTTATCGCCATTATTTAGTCCACTGACTTCTGAATTTAATTCAAGAGTTTGTTTTGATTTTTCAATATTTAATTCATGACTTTGTTCTGATTTTTAGACATTTAATTCATGAGTTTGTTTTGATTTTTCAATTTCTTGCTGTTGTTATTTGTTAACAGATTAGTTCATATAAACCCTCATCATTGTTCTTGTTATGGAGGGAATTTTGAAGAAATATCAACAGAAATTCAGGAAAGTACGAGAAGAAATGGATCGTTGGGAAGACCTCCAGTCCCGCTTAATGTCCCAATTCTCGAATGCTTCTTCCATCATTGGAAGACTTCAGGTCTCTAACTTTTAACTTCAATTTTTAATTTTTTTGTCTATTTGATTGTGTGGGAAGATTAAAGTTCTAATCTTTGTGCTTTAGTTTCTGAAATTGATTATGATTTTGGAAAATTTTTGTTTAGATGATTGGAGATAAGAAGAATTATGGTAGTTTGAAGGGTGTTAATGGGGTTGAAGATGCAGTTTTGCAGAAGCAAATGGAGTCTTTGGAGACAATTTTGCTTTCAATTAAGAAGACTGTGTTAGTTCAATTACTTTCCTCAGCACTTTACTTTTGTCGCTTTTTTGTTTGCAATTGAACATCTCTATTGCTCTTATGTGTTACTTCGGCTTTTCATTTTACTTTAAGTGCCCGTGTTAGAGGCTCGATACTTGGAGATAGATTTGACACTTAGATACTTCAGTTTGGAATAGTATGATACAGAATTTTCAATTTGTTTTTAAGTACTTTGTTTTTGTTGCTACATTGTTAGAAATTGCATATCAATTTCTTTCTCGAATCGTAGTATGTGGTAAGAAGATGATATGGATTCACTATTCCAAAAAAAATATAAGCTAAGTGATTATAATGAGCATATGAGCTGAATTTGTTTGCCTCAATTTAACACCTCCATCGCCCTTTTTAATAGAATGTGGTAAGAAGACTATCTGACTTGTGTGCTCATTGTTAGAGACTTAGAGATCAGTTTGGTAAAGTGAGAACAATAGCTAAGGAAACACTTTGGCTGACGGTTGATTGAAAACTTATGCTTGATGATCATGTACAACTATTATCCACCCCTCATGGCCTGAATTTATGTCATTCATATGAGGATTCGTTGTCAAGATAGCATGAAGTAGATTCCTGAAGACATTAAAATAACTGGCTACTCTTTGTAGGGAAGATTTCCACAGTATTGTACTGTCATTAGAAAAGATGGTCCGTGACAGTAAGCAGCTTGTTCAAGGAGGATCTCATCAGCGTTCCACTAAACAACTGCAGCAGAGAGTGGGGTTGAAACCAAGTCTTTCAGATTGCTTAGATGGGCTTGCTATTCTGCTGGAGATGCACAACTCTGAGTAGGTTTTTTATTTTTTGTTTTTTGGCATGTTCTTAATTATCTACAAAGTCTAAGAAATGTGATTATGACTTATGAGCACCACGGTATAAATTACAAGTGAGGAGAGACATACTTAAAGATTAACTCTCCTCATTGCTTTGGTTGGTCCATTGCTTCCAACCTTCTATAAACCTTGTGTTATCGGTTGGTAATTGCCATTCACTCTCTCTCTTTTTTGTTTTTACATCTCCCTTTCTTTGGGTTCTGTTGGGGAGAGAGGGGAGGAGAGAAGCAGTGGCGTATCCAGGATTTTGAAATAGGGTAGACAGTAGACTATACTACATACGTAGTAGTATATAATAAAATAAATGACATGTAGGTAATATATTATAGAGAGTATACATAAAATTACTTATGTACATATAGGAGAAAATAATAAAAGAAACTTATAACTACGAAGTATTTCCTTAACAAAAGTGTATACAATTAATGGTTATTTTTTGAGAAAAAATAAAAATATACCATGATTTGATCTTCATACAACATATAGTAATATCTATTATAATTACTATAGAACAACTATTTTGCCTAATATACTACTCCACTTCTCATTATTCAGATTAATGTATTTCGTATTACAATACTTTTTTTAGGAGTTACGCTTGTAAAATAAATATTGATTAAGGATGTTGTATGTGAACTTGGAATTGCATTGAGTTGTTGGATGAATATAAATTATGCAATAAAATGATCAAAGTAAAAAAATCATCTTGTACATAAGAAAAATTGTTGCCACTACTCGAACCCGCGACCTGTTGAATTCTATAAGTAGTAACAACCATTGAGCTGCAAATACGTTTATGTATCCTTTAGGGTAATATTAGTATAAATGAGAATTAATGACTTTGTTTCAGAATGTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNGGGGGGGGGGGGGGGGGTAGACATTTGTCTACCCTAAGTACTAGTAGATCCGCCCATGGAGAGAAGGATTTGAGGGTTCATGGGAAAAGGCTGTTTTTCAATTCAGACTGTCATAGTTTCCTTTATTCACTTTCCCATCTATGCATGTAGGTCAAAGCATATTAATGCTTACATTTTCTCCCTTTTGCTAATGCAGGTACCTTCTGAAATCATCAGTTGTTTCTGCACTCTTGAATATTGCTTTAAAGCCCAGGTAAATTAAGATAGACGATGGGTTTTTCCTTGTATGCCGCATTGTTAGTATCTTTGCCCTTTCCAGTATTGACTTAGCAAAGTGGTTGCTTATGATTAGGAATTAGAATAATGAAGAAAACAAGGGTGGTGCTTAGGTCTTACAAATGTTTTACAGTGCAGAAAATTACCAACTATTACAGTTCAGAAGCTAGACTATGTTGATGTTACTGTCATTGCCTAAAGGATGTTATTTCACTGTTATGATTTGTGACTACATTTTGTCAAATTCCTGTTGTGCTATAGTGCTATTGTGTTGAGAGATATGTTACCCTATTTGGCTATTATTGGTACCTTTGGGTCTTAGAAGTTTCGTAAGCATCGATTGTGTTTGAAAATGTTGTGTTTGTGATTTACTTCTTGGCTATTTCTATGTTTTGATTCCTGTGACCCTGACTAAGGTTCAACTTCATTCAGTTCCAAAGACCTGGGAGCGTTGCGCCAGCTTTTGTTCGATCAGCCCAATATCCCTAGAGACGAAGGTATGCGTGCTATTTTTGAGATAAAAGCTGAAGTCAGAATATCTGTCATGAACTCATGATATGTGACAAGTAACCGAGAATCCATAGGTCTTCCGTTTATTAATCATCTCTTACTCATAATTTACTTTTGGAGTTTTGGGTATTGACTGGATCAATGGAGTGGCCAAGTATTTATATTGCATAAAATAAAGAGAGGCATAACCTGGTAGTCCTGGACTCCTGGTTACAGTTTCCTAGCAGACCCAGCATTGGCCTTTTAAACCGCATATTTTTTACGCGTATATTCTAACTTTTGCCTTTGACTTCACAAATGTTAAAACTTATTCCTGGTCATTGACCTGGTTTATGGAAGAGAAGGTTTAATCTGGGAACATCTGCAGTTTACCAAAAAGTCGGAATTGTTGCTTTCATATTTGGATTTCTCTTTTCTATTTTGTTGGCGGACTTGCAGATCTGATAACTGTGATCTTTATGAGCTGCCTGTAGAAATAGAAATTCTTATGCCATCTCATGTTGTGGATTGCAGTGCAGTTCATTTATGACATAATTTTCGCCGAAGACATTTGTTAAAATGGACATCAGTCACTGGTAATTTGAAGCTGGAATTAAAGTGCAGTTCAACATGAGTGATTCTACTTCAGTCATCTGAGGCTGGAGTTCAGTACACCTGCCTCCTTGGCATGGTTGGCGGGTTTATGACACGCAGTACTCCCTCGCTGAAGCACATCTAATTACAAGGCATGTCAGTATCACATATAGCCCGCAATTTTCCTGTGCAGATCAGCAAATGATAGAAAAGATGATTCTGAATCCCTCAAGTGTCGCTCGTGACTGCCTGGTGTTGCTGATTTTTCTTGGGAAAATCCCTGAAGAACAGAAAACTTGATTTGTATGCAATTAATTATGTTCATTTCATTGATTAATTTACCAGAAAACTTTTGTCTAAATTTCCATTCTTCATTTGAAACAAGTACAAAGAAATCAAGTGAAATACAATGAACAAGAATAAGCTTTATACATTGCAGGGTATACTTCAGCTACAATGATTAAGCAAACATCAGCCAGAAATCATTCACAATAACATCCTCATTCTTTCTGAGTTTCTTCAGCATCACAGATTCACAGCGATCCTTGCCTCCGGTCCAAGATTGAGGAGCATGACTATTCAACATAGTCTGAACTCTGAAGTTCCGAATCACGGGAATCACCACGATTCTCTGCCATAAACGGTCTGAAAAAAGGCGTTGCCATCCTCCCCTTCAAATGGGTCCGTTTTGCGTCTCCTCTCAGTTGGACAAAGAGCAGAGATTGCGGATATGGTCATGAAACCCATGCTTATCATGAATATTGTTCCGGAAGCTAACAAAATGATTGAAACCATTTTTAATGTGGTGAAAAGTTCTTTTGAGTTGATATTGTAAGTTGTAAGTCTGAAACTTTTTTGCTAATATACTCAATGTTTTCATCTTCATCCCCTTTAAACATCCTTCTTTAACCCCCTTTCCAAGTTTGTAGAGACCTTTTGCTTCTTTTACCATTTCTGGGGTTAAGTTTTGATGTTTTCCACATGGCCT GTAGGTCACGTGACCCAGGAATTTTTTGGGAAAAAATTTTAAAAAAAATCACCCAAAAATGTTCAGACCTATTTCGCGTAACACCTACTCCTCTCCTCCTCTGCTCCCCACAGCGCCGCCCAGGCTGCCCACTTGCCCAGCCCTCAGCCGTCACCGTCACCGGTACTTAGGTCCACCAATGTGACCGGCTCACAGGTCCACCACCGTCACCAGCTCTGCGTCTCAGCTCACCGCGCGCCCAGCCGCCCACTACGACGTAGTCTACCGTCTACAAGAAGCTGAACTGCCGTCTGCTGAAGCTCCGCCGGACCGCCCCTCACCATTCACCATTCTTCAAGGACTCAAGATTAGTTCATATAAACCCTCATCATTGTTCTTGTTATGGAGGGAATTTTGAAGAAATATCAACAGAAATTCAGGAAAGTACGAGAAGAAATGGATCGTTGGGAAGACCTCCAGTCCCGCTTAATGTCCCAATTCTCGAATGCTTCTTCCATCATTGGAAGACTTCAGATGATTGGAGATAAGAAGAATTATGGTAGTTTGAAGGGTGTTAATGGGGTTGAAGATGCAGTTTTGCAGAAGCAAATGGAGTCTTTGGAGACAATTTTGCTTTCAATTAAGAAGACTGTGGAAGATTTCCACAGTATTGTACTGTCATTAGAAAAGATGGTCCGTGACAGTAAGCAGCTTGTTCAAGGAGGATCTCATCAGCGTTCCACTAAACAACTGCAGCAGAGAGTGGGGTTGAAACCAAGTCTTTCAGATTGCTTAGATGGGCTTGCTATTCTGCTGGAGATGCACAACTCTGAGTACCTTCTGAAATCATCAGTTGTTTCTGCACTCTTGAATATTGCTTTAAAGCCCAGTTCCAAAGACCTGGGAGCGTTGCGCCAGCTTTTGTTCGATCAGCCCAATATCCCTAGAGACGAAGTGCAGTTCATTTATGACATAATTTTCGCCGAAGACATTTGTTAAAATGGACATCAGTCACTGGTAATTTGAAGCTGGAATTAAAGTGCAGTTCAACATGAGTGATTCTACTTCAGTCATCTGAGGCTGGAGTTCAGTACACCTGCCTCCTTGGCATGGTTGGCGGGTTTATGACACGCAGTACTCCCTCGCTGAAGCACATCTAATTACAAGGCATGTCAGTATCACATATAGCCCGCAATTTTCCTGTGCAGATCAGCAAATGATAGAAAAGATGATTCTGAATCCCTCAAGTGTCGCTCGTGACTGCCTGGTGTTGCTGATTTTTCTTGGGAAAATCCCTGAAGAACAGAAAACTTGATTTGGTATACTTCAGCTACAATGATTAAGCAAACATCAGCCAGAAATCATTCACAATAACATCCTCATTCTTTCTGAGTTTCTTCAGCATCACAGATTCACAGCGATCCTTGCCTCCGGTCCAAGATTGAGGAGCATGACTATTCAACATAGTCTGAACTCTGAAGTTCCGAATCACGGGAATCACCACGATTCTCTGCCATAAACGGTCTGAAAAAAGGCGTTGCCATCCTCCCCTTCAAATGGGTCCGTTTTGCGTCTCCTCTCAGTTGGACAAAGAGCAGAGATTGCGGATATGGTCATGAAACCCATGCTTATCATGAATATTGTTCCGGAAGCTAACAAAATGATTGAAACCATTTTTAATGTGGTGAAAAGTTCTTTTGAGTTGATATTGTAAGTTGTAAGTCTGAAACTTTTTTGCTAATATACTCAATGTTTTCATCTTCATCCCCTTTAAACATCCTTCTTTAACCCCCTTTCCAAGTTTGTAGAGACCTTTTGCTTCTTTTACCATTTCTGGGGTTAAGTTTTGATGTTTTCCACATGGCCT ATGGAGGGAATTTTGAAGAAATATCAACAGAAATTCAGGAAAGTACGAGAAGAAATGGATCGTTGGGAAGACCTCCAGTCCCGCTTAATGTCCCAATTCTCGAATGCTTCTTCCATCATTGGAAGACTTCAGATGATTGGAGATAAGAAGAATTATGGTAGTTTGAAGGGTGTTAATGGGGTTGAAGATGCAGTTTTGCAGAAGCAAATGGAGTCTTTGGAGACAATTTTGCTTTCAATTAAGAAGACTGTGGAAGATTTCCACAGTATTGTACTGTCATTAGAAAAGATGGTCCGTGACAGTAAGCAGCTTGTTCAAGGAGGATCTCATCAGCGTTCCACTAAACAACTGCAGCAGAGAGTGGGGTTGAAACCAAGTCTTTCAGATTGCTTAGATGGGCTTGCTATTCTGCTGGAGATGCACAACTCTGAGTACCTTCTGAAATCATCAGTTGTTTCTGCACTCTTGAATATTGCTTTAAAGCCCAGTTCCAAAGACCTGGGAGCGTTGCGCCAGCTTTTGTTCGATCAGCCCAATATCCCTAGAGACGAAGTGCAGTTCATTTATGACATAATTTTCGCCGAAGACATTTGTTAA MEGILKKYQQKFRKVREEMDRWEDLQSRLMSQFSNASSIIGRLQMIGDKKNYGSLKGVNGVEDAVLQKQMESLETILLSIKKTVEDFHSIVLSLEKMVRDSKQLVQGGSHQRSTKQLQQRVGLKPSLSDCLDGLAILLEMHNSEYLLKSSVVSALLNIALKPSSKDLGALRQLLFDQPNIPRDEVQFIYDIIFAEDIC Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22401.1 vs. NCBI nr
Match: gi|902185993|gb|KNA10594.1| (hypothetical protein SOVF_142870 [Spinacia oleracea]) HSP 1 Score: 375.6 bits (963), Expect = 5.500e-101 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
BLAST of Spo22401.1 vs. NCBI nr
Match: gi|731321288|ref|XP_010671271.1| (PREDICTED: uncharacterized protein At5g43822 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 315.1 bits (806), Expect = 8.800e-83 Identity = 165/198 (83.33%), Postives = 181/198 (91.41%), Query Frame = 1
BLAST of Spo22401.1 vs. NCBI nr
Match: gi|225457586|ref|XP_002272933.1| (PREDICTED: uncharacterized protein At5g43822 [Vitis vinifera]) HSP 1 Score: 282.7 bits (722), Expect = 4.900e-73 Identity = 143/198 (72.22%), Postives = 176/198 (88.89%), Query Frame = 1
BLAST of Spo22401.1 vs. NCBI nr
Match: gi|802605140|ref|XP_012073629.1| (PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]) HSP 1 Score: 276.6 bits (706), Expect = 3.500e-71 Identity = 142/198 (71.72%), Postives = 171/198 (86.36%), Query Frame = 1
BLAST of Spo22401.1 vs. NCBI nr
Match: gi|567885675|ref|XP_006435396.1| (hypothetical protein CICLE_v10002549mg [Citrus clementina]) HSP 1 Score: 269.6 bits (688), Expect = 4.300e-69 Identity = 136/198 (68.69%), Postives = 173/198 (87.37%), Query Frame = 1
BLAST of Spo22401.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTK1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142870 PE=4 SV=1) HSP 1 Score: 375.6 bits (963), Expect = 3.800e-101 Identity = 198/198 (100.00%), Postives = 198/198 (100.00%), Query Frame = 1
BLAST of Spo22401.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CWF0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050520 PE=4 SV=1) HSP 1 Score: 315.1 bits (806), Expect = 6.200e-83 Identity = 165/198 (83.33%), Postives = 181/198 (91.41%), Query Frame = 1
BLAST of Spo22401.1 vs. UniProtKB/TrEMBL
Match: D7UDC1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0122g01050 PE=4 SV=1) HSP 1 Score: 282.7 bits (722), Expect = 3.400e-73 Identity = 143/198 (72.22%), Postives = 176/198 (88.89%), Query Frame = 1
BLAST of Spo22401.1 vs. UniProtKB/TrEMBL
Match: A0A067GZY6_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028912mg PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 3.000e-69 Identity = 136/198 (68.69%), Postives = 173/198 (87.37%), Query Frame = 1
BLAST of Spo22401.1 vs. UniProtKB/TrEMBL
Match: V4TG37_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002549mg PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 3.000e-69 Identity = 136/198 (68.69%), Postives = 173/198 (87.37%), Query Frame = 1
BLAST of Spo22401.1 vs. ExPASy Swiss-Prot
Match: Y5382_ARATH (Uncharacterized protein At5g43822 OS=Arabidopsis thaliana GN=At5g43822 PE=2 SV=1) HSP 1 Score: 198.0 bits (502), Expect = 9.900e-50 Identity = 103/197 (52.28%), Postives = 150/197 (76.14%), Query Frame = 1
BLAST of Spo22401.1 vs. TAIR (Arabidopsis)
Match: AT5G43822.1 (Pentatricopeptide repeat (PPR) superfamily protein) HSP 1 Score: 198.0 bits (502), Expect = 5.600e-51 Identity = 103/197 (52.28%), Postives = 150/197 (76.14%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22401.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22401.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22401.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo22401.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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