Spo22402 (gene) | SpinachBase

Overview


Name	Spo22402
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Response to low sulfur 3, putative
Location	chr3 : 7982978 .. 7983343 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGCCAACAATCGCCGTATATTCATCACAATACAGCGGAAAAACCTCCGACAAAAGGAACAATGTCGTCGAAAATGGTGATGATAAGGAGACGATGAGGATGAGGAATGCGGAGCTTGAACGAGAGTTAAAGGCGAGTTTGGAGAGAGAAGAGAAGATGAGGAGAGAACTCCAGAAAGTTTGGGAGAGGGTTAGGGTGGCAGAAGAGGCGGAGGAGATGCTTTGCTCACAATTAGGGGAGCTTGAAGTTGAAGCTGTTGAACAAGCGCGTGAGTATAACGCTCGTGTTTCTGCGTTGAGGGAACAGCTTTCTCGTGCTCATTTGCTCCTCCAATCTGCTTCTATCTCCCCTGTTTCTCAATAA

mRNA sequence

ATGGCGCCAACAATCGCCGTATATTCATCACAATACAGCGGAAAAACCTCCGACAAAAGGAACAATGTCGTCGAAAATGGTGATGATAAGGAGACGATGAGGATGAGGAATGCGGAGCTTGAACGAGAGTTAAAGGCGAGTTTGGAGAGAGAAGAGAAGATGAGGAGAGAACTCCAGAAAGTTTGGGAGAGGGTTAGGGTGGCAGAAGAGGCGGAGGAGATGCTTTGCTCACAATTAGGGGAGCTTGAAGTTGAAGCTGTTGAACAAGCGCGTGAGTATAACGCTCGTGTTTCTGCGTTGAGGGAACAGCTTTCTCGTGCTCATTTGCTCCTCCAATCTGCTTCTATCTCCCCTGTTTCTCAATAA

Coding sequence (CDS)

ATGGCGCCAACAATCGCCGTATATTCATCACAATACAGCGGAAAAACCTCCGACAAAAGGAACAATGTCGTCGAAAATGGTGATGATAAGGAGACGATGAGGATGAGGAATGCGGAGCTTGAACGAGAGTTAAAGGCGAGTTTGGAGAGAGAAGAGAAGATGAGGAGAGAACTCCAGAAAGTTTGGGAGAGGGTTAGGGTGGCAGAAGAGGCGGAGGAGATGCTTTGCTCACAATTAGGGGAGCTTGAAGTTGAAGCTGTTGAACAAGCGCGTGAGTATAACGCTCGTGTTTCTGCGTTGAGGGAACAGCTTTCTCGTGCTCATTTGCTCCTCCAATCTGCTTCTATCTCCCCTGTTTCTCAATAA

Protein sequence

MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQKVWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISPVSQ

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo22402.1	Spo22402.1	mRNA

Homology

[Close]

BLAST of Spo22402.1 vs. NCBI nr
Match: gi|902185991|gb|KNA10592.1| (hypothetical protein SOVF_142850 [Spinacia oleracea])

HSP 1 Score: 216.1 bits (549), Expect = 3.400e-53
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK
Sbjct: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISPVS 120
           VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISPVS
Sbjct: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISPVS 120

Query: 121 Q 122
           Q
Sbjct: 121 Q 121

[Close]

BLAST of Spo22402.1 vs. NCBI nr
Match: gi|731321284|ref|XP_010671268.1| (PREDICTED: uncharacterized protein LOC104888104 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 150.2 bits (378), Expect = 2.300e-33
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           MAPTIAVYSS+++GK SDKR N + N DD E MR RN ELERELK SL REEKM+ +L++
Sbjct: 1   MAPTIAVYSSEFNGKFSDKRKNNIRN-DDVEMMRKRNEELERELKESLIREEKMKVQLER 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISP 119
           V ERVRVAEEAEE LC +LGELEVEAVE AREYNAR++AL +QLSRAH+LLQSASISP
Sbjct: 61  VLERVRVAEEAEERLCLELGELEVEAVENAREYNARIAALMDQLSRAHMLLQSASISP 117

[Close]

BLAST of Spo22402.1 vs. NCBI nr
Match: gi|565361603|ref|XP_006347545.1| (PREDICTED: ribonuclease Y-like [Solanum tuberosum])

HSP 1 Score: 112.1 bits (279), Expect = 6.900e-22
Identity = 70/116 (60.34%), Postives = 81/116 (69.83%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           MAPTIAV S+Q    T       +    + E +R RN ELE+ELK S EREEKMR ELQK
Sbjct: 1   MAPTIAVPSTQ----TKPYHRREISAVPESEVLRRRNEELEKELKKSFEREEKMREELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASI 117
           +WER+RVAEEAEE LCSQLGE E EAV+QAR Y  RV  L +QLS A  LL+SAS+
Sbjct: 61  IWERLRVAEEAEERLCSQLGEFEAEAVDQARAYRTRVMNLMDQLSLAQKLLESASV 112

[Close]

BLAST of Spo22402.1 vs. NCBI nr
Match: gi|970015954|ref|XP_015069063.1| (PREDICTED: uncharacterized protein LOC107013704 [Solanum pennellii])

HSP 1 Score: 110.5 bits (275), Expect = 2.000e-21
Identity = 71/116 (61.21%), Postives = 83/116 (71.55%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           MAPTIAV S+Q +     + + V E+    E +R RN ELE+ELK S EREEKMR ELQK
Sbjct: 1   MAPTIAVPSTQTTPHHRRETSAVPES----EVLRRRNEELEKELKKSFEREEKMREELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASI 117
            W+R+RVAEEAEE LCSQLGE E EAV+QAR Y  RV  L +QLS A  LLQSAS+
Sbjct: 61  TWKRLRVAEEAEERLCSQLGEFEAEAVDQARAYRTRVMNLMDQLSLAQKLLQSASV 112

[Close]

BLAST of Spo22402.1 vs. NCBI nr
Match: gi|565361605|ref|XP_006347546.1| (PREDICTED: uncharacterized protein LOC102598720 [Solanum tuberosum])

HSP 1 Score: 106.7 bits (265), Expect = 2.900e-20
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           M  TIAV S    GK +  R  V     + E +R RN ELE+ELK S+EREEKMR ELQK
Sbjct: 1   MFSTIAVPS----GKANPHRREV-SAVPESEVLRRRNEELEKELKKSIEREEKMREELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASIS 118
            WER+RVAEEAEE LCSQLGELE EAV+QAR Y  RV  L +QLS A   L+SASIS
Sbjct: 61  TWERLRVAEEAEERLCSQLGELEAEAVDQARAYRTRVINLMDQLSLAQKFLESASIS 112

[Close]

BLAST of Spo22402.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTH9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_142850 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 2.400e-53
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK
Sbjct: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISPVS 120
           VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISPVS
Sbjct: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISPVS 120

Query: 121 Q 122
           Q
Sbjct: 121 Q 121

[Close]

BLAST of Spo22402.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CS37_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g050500 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 1.600e-33
Identity = 88/118 (74.58%), Postives = 101/118 (85.59%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           MAPTIAVYSS+++GK SDKR N + N DD E MR RN ELERELK SL REEKM+ +L++
Sbjct: 1   MAPTIAVYSSEFNGKFSDKRKNNIRN-DDVEMMRKRNEELERELKESLIREEKMKVQLER 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISP 119
           V ERVRVAEEAEE LC +LGELEVEAVE AREYNAR++AL +QLSRAH+LLQSASISP
Sbjct: 61  VLERVRVAEEAEERLCLELGELEVEAVENAREYNARIAALMDQLSRAHMLLQSASISP 117

[Close]

BLAST of Spo22402.1 vs. UniProtKB/TrEMBL
Match: M0ZIJ1_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000546 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 4.800e-22
Identity = 70/116 (60.34%), Postives = 81/116 (69.83%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           MAPTIAV S+Q    T       +    + E +R RN ELE+ELK S EREEKMR ELQK
Sbjct: 1   MAPTIAVPSTQ----TKPYHRREISAVPESEVLRRRNEELEKELKKSFEREEKMREELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASI 117
           +WER+RVAEEAEE LCSQLGE E EAV+QAR Y  RV  L +QLS A  LL+SAS+
Sbjct: 61  IWERLRVAEEAEERLCSQLGEFEAEAVDQARAYRTRVMNLMDQLSLAQKLLESASV 112

[Close]

BLAST of Spo22402.1 vs. UniProtKB/TrEMBL
Match: M0ZIJ0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400000545 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.000e-20
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           M  TIAV S    GK +  R  V     + E +R RN ELE+ELK S+EREEKMR ELQK
Sbjct: 1   MFSTIAVPS----GKANPHRREV-SAVPESEVLRRRNEELEKELKKSIEREEKMREELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASIS 118
            WER+RVAEEAEE LCSQLGELE EAV+QAR Y  RV  L +QLS A   L+SASIS
Sbjct: 61  TWERLRVAEEAEERLCSQLGELEAEAVDQARAYRTRVINLMDQLSLAQKFLESASIS 112

[Close]

BLAST of Spo22402.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H0C1_SOLCH (Putative centrosome and spindle pole-associated protein 1-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 2.000e-20
Identity = 72/117 (61.54%), Postives = 81/117 (69.23%), Query Frame = 1

		  
Query: 1   MAPTIAVYSSQYSGKTSDKRNNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQK 60
           M  TIAV S    GK +  R  V     + E +R RN ELE+ELK S+EREEKMR ELQK
Sbjct: 1   MFSTIAVPS----GKANPHRREV-SAVPESEVLRRRNEELEKELKKSIEREEKMREELQK 60

Query: 61  VWERVRVAEEAEEMLCSQLGELEVEAVEQAREYNARVSALREQLSRAHLLLQSASIS 118
            WER+RVAEEAEE LCSQLGELE EAV+QAR Y  RV  L +QLS A   L+SASIS
Sbjct: 61  TWERLRVAEEAEERLCSQLGELEAEAVDQARAYRTRVINLMDQLSLAQKFLESASIS 112

[Close]

BLAST of Spo22402.1 vs. TAIR (Arabidopsis)
Match: AT3G49570.1 (response to low sulfur 3)

HSP 1 Score: 70.1 bits (170), Expect = 1.100e-12
Identity = 44/92 (47.83%), Postives = 65/92 (70.65%), Query Frame = 1

		  
Query: 28  DDKETMRMRNAELERELKASLEREEKMRRELQKVWERVRVAEEAEEMLCSQLGELEVEAV 87
           ++ E +R RN ELERE+       E+M++E+ ++W R  VAEEAEE LCSQL ELEVE++
Sbjct: 13  EEVEELRRRNGELEREM-------EEMKKEMVQLWRRTVVAEEAEERLCSQLAELEVESL 72

Query: 88  EQAREYNARVSALREQLSRAHLLLQSASISPV 120
           +QAR+Y++R+  L +Q+SR    L S+S+  V
Sbjct: 73  DQARDYHSRIVFLMDQISR----LSSSSLEVV 93

[Close]

BLAST of Spo22402.1 vs. TAIR (Arabidopsis)
Match: AT5G24655.1 (response to low sulfur 4)

HSP 1 Score: 65.1 bits (157), Expect = 3.400e-11
Identity = 43/98 (43.88%), Postives = 62/98 (63.27%), Query Frame = 1

		  
Query: 21  NNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQKVWERVRVAEEAEEMLCSQLG 80
           N V+    + E +R +N E+E+ +       E+MR+E+ ++W R +VAEEAEE LCSQL 
Sbjct: 6   NYVMVAASEVEELRQKNGEMEKAV-------EEMRKEMLQLWRRTQVAEEAEEHLCSQLA 65

Query: 81  ELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISP 119
           ELE E+++QAR+Y+ R+  L  QLSR      S S SP
Sbjct: 66  ELEAESLDQARDYHTRIIFLTNQLSR----FSSDSASP 92

[Close]

BLAST of Spo22402.1 vs. TAIR (Arabidopsis)
Match: AT5G24660.1 (response to low sulfur 2)

HSP 1 Score: 64.3 bits (155), Expect = 5.900e-11
Identity = 42/98 (42.86%), Postives = 64/98 (65.31%), Query Frame = 1

		  
Query: 21  NNVVENGDDKETMRMRNAELERELKASLEREEKMRRELQKVWERVRVAEEAEEMLCSQLG 80
           N V     + + +R +N E+E+ +       E+M++E+ ++W R +VAEEAEE LCSQL 
Sbjct: 6   NYVTVAASEVDELRRKNGEMEKAV-------EEMKKEMLQLWRRTQVAEEAEERLCSQLA 65

Query: 81  ELEVEAVEQAREYNARVSALREQLSRAHLLLQSASISP 119
           ELE E+++QAR+Y++R+  L  +LSR  L   SAS SP
Sbjct: 66  ELEAESLDQARDYHSRIIFLMNELSR--LSSDSASASP 94

[Close]

BLAST of Spo22402.1 vs. TAIR (Arabidopsis)
Match: AT3G49580.1 (response to low sulfur 1)

HSP 1 Score: 64.3 bits (155), Expect = 5.900e-11
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 1

		  
Query: 28  DDKETMRMRNAELERELKASLEREEKMRRELQKVWERVRVAEEAEEMLCSQLGELEVEAV 87
           ++ + +R RN EL RE+        +M+ E+ K+W+R  VAEEAEE LCSQL ELEVE++
Sbjct: 13  EEMDELRRRNIELSREVA-------EMKTEMIKLWQRTVVAEEAEEQLCSQLAELEVESL 72

Query: 88  EQAREYNARVSALREQLSRAHLLLQSASI 117
           EQAR+Y+ R+  L +Q+SR    L S+S+
Sbjct: 73  EQARDYHDRMLFLMDQISR----LSSSSV 90

The following BLAST results are available for this feature:

BLAST of Spo22402.1 vs. NCBI nr
BLAST of Spo22402.1 vs. UniProtKB/TrEMBL
BLAST of Spo22402.1 vs. ExPASy Swiss-Prot
BLAST of Spo22402.1 vs. TAIR (Arabidopsis)

BLAST of Spo22402.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902185991\|gb\|KNA10592.1\|	3.4e-53	100.	hypothetical protein SOVF_1428...	[more]
gi\|731321284\|ref\|XP_010671268.1\|	2.3e-33	74.5	PREDICTED: uncharacterized pro...	[more]
gi\|565361603\|ref\|XP_006347545.1\|	6.9e-22	60.3	PREDICTED: ribonuclease Y-like...	[more]
gi\|970015954\|ref\|XP_015069063.1\|	2.0e-21	61.2	PREDICTED: uncharacterized pro...	[more]
gi\|565361605\|ref\|XP_006347546.1\|	2.9e-20	61.5	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo22402.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QTH9_SPIOL	2.4e-53	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CS37_BETVU	1.6e-33	74.5	Uncharacterized protein OS=Bet...	[more]
M0ZIJ1_SOLTU	4.8e-22	60.3	Uncharacterized protein OS=Sol...	[more]
M0ZIJ0_SOLTU	2.0e-20	61.5	Uncharacterized protein OS=Sol...	[more]
A0A0V0H0C1_SOLCH	2.0e-20	61.5	Putative centrosome and spindl...	[more]

BLAST of Spo22402.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo22402.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
AT3G49570.1	1.1e-12	47.8	response to low sulfur 3	[more]
AT5G24655.1	3.4e-11	43.8	response to low sulfur 4	[more]
AT5G24660.1	5.9e-11	42.8	response to low sulfur 2	[more]
AT3G49580.1	5.9e-11	47.1	response to low sulfur 1	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 30..61 score: -coord: 83..103 scor
None	No IPR available	PANTHER	PTHR34283	FAMILY NOT NAMED	coord: 2..121 score: 1.4
None	No IPR available	PANTHER	PTHR34283:SF1	SUBFAMILY NOT NAMED	coord: 2..121 score: 1.4

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0008299	isoprenoid biosynthetic process
biological_process	GO:0015979	photosynthesis
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0019379	sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin)
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0033741	adenylyl-sulfate reductase (glutathione) activity
molecular_function	GO:0004604	phosphoadenylyl-sulfate reductase (thioredoxin) activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo04503	0.79	Barchart \| Table
Spo13793	0.74	Barchart \| Table
Spo10990	0.69	Barchart \| Table
Spo15949	0.66	Barchart \| Table
Spo18902	0.66	Barchart \| Table
Spo04615	0.65	Barchart \| Table