Spo22445 (gene)

Overview
NameSpo22445
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhot
LocationSuper_scaffold_60 : 592956 .. 593788 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTAGTAATTGTATGGTTAGAAAGAGAAATATCCGCAAGTATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGGATTCTTCAAGCTTTAGCGGACGGAACAAAACTGCTTTTTNGAGAAATATCCGCAAGTATACAACAACGTATTGGACCTGAATATGCTGGTCCTTTGGGGATTCTTCAAGCTTTAGCGGACGGAACAAAACTGCTTTTTAAAGAAAACCTTCTTCCATCTAGGGGGGATACATATTTATTTAGTATTGGACCTTCTATAGCAGTCATATCGATTCTACTAGGTTACTTAATAATTCCTTTTGGGTCTCGCCTTGTTCTAGCCGATCTCAGTATTGGTGTTTTTTTATGGATCGCTGTTTCAAGCATTGCTCCGATTGGACTTCTTATGTCAGGATATGGATCANNNNNNNNNNACCCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA

mRNA sequence

ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTATAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA

Coding sequence (CDS)

ATGGATGCTTTTCCCTATTTTGATTCTCGTATTGGGAATTACAATAGGTGTACTATAACCGGTTTTTGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCTTTGAACCTACGTGCCTATGACTTCGTTTCCCAGGAAATCCGTGCAGCTGAAGATCCTGAATTTGAAACTTTTTACACCAAAAATATTCTCTTAAACGAGGGTATCCGTGCTTGGATGGCGGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCCCGTGGAAACGCTCTTTAA

Protein sequence

MDAFPYFDSRIGNYNRCTITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQPHENLIFPEEVLPRGNAL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo22445.1Spo22445.1mRNA


Homology
[Close]
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|985430945|ref|XP_015387348.1| (PREDICTED: uncharacterized protein LOC107177670 [Citrus sinensis])

HSP 1 Score: 162.2 bits (409), Expect = 4.600e-37
Identity = 77/78 (98.72%), Postives = 77/78 (98.72%), Query Frame = 1 

		  

Query: 18  TITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQ 77
           TITG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQ
Sbjct: 88  TITGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQ 147

Query: 78  PHENLIFPEEVLPRGNAL 96
           PHENLIFPEEVLPRGNAL
Sbjct: 148 PHENLIFPEEVLPRGNAL 165
[Close]
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|816377432|gb|AKF00091.1| (photosystem II protein D2 (chloroplast) [Orania palindan])

HSP 1 Score: 160.2 bits (404), Expect = 1.700e-36
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           ITG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 ITGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|511265852|gb|AGN71959.1| (photosystem II protein D2 [Dasiphora fruticosa subsp. floribunda])

HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|11497520|ref|NP_054928.1| (photosystem II protein D2 [Spinacia oleracea])

HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. NCBI nr
Match: gi|628819103|gb|AHY80536.1| (photosystem II protein D2 (plastid) [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 159.8 bits (403), Expect = 2.300e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0H3VQ29_9LILI (Photosystem II D2 protein OS=Orania palindan GN=psbD PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.200e-36
Identity = 76/77 (98.70%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           ITG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 ITGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: S4T0Y5_MEDTR (Photosystem II D2 protein OS=Medicago truncatula GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0K1ZA94_MONFI (Photosystem II D2 protein OS=Monarda fistulosa var. mollis GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: A0A0G2YEU1_9ROSI (Photosystem II D2 protein OS=Geranium incanum GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Match: F6I8M7_OLEEU (Photosystem II D2 protein OS=Olea europaea subsp. cuspidata GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.600e-36
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_AETGR (Photosystem II D2 protein OS=Aethionema grandiflorum GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_NUPAD (Photosystem II D2 protein OS=Nuphar advena GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_NYMAL (Photosystem II D2 protein OS=Nymphaea alba GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_VITVI (Photosystem II D2 protein OS=Vitis vinifera GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Match: PSBD_ACOAM (Photosystem II D2 protein OS=Acorus americanus GN=psbD PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 1.400e-38
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
[Close]
BLAST of Spo22445.1 vs. TAIR (Arabidopsis)
Match: ATCG00270.1 (photosystem II reaction center protein D)

HSP 1 Score: 159.8 bits (403), Expect = 8.000e-40
Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 1 

		  

Query: 19  ITGFWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 78
           +TG WMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP
Sbjct: 277 VTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIRAWMAAQDQP 336

Query: 79  HENLIFPEEVLPRGNAL 96
           HENLIFPEEVLPRGNAL
Sbjct: 337 HENLIFPEEVLPRGNAL 353
The following BLAST results are available for this feature:
BLAST of Spo22445.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|985430945|ref|XP_015387348.1|4.6e-3798.7PREDICTED: uncharacterized pro... [more]
gi|816377432|gb|AKF00091.1|1.7e-3698.7photosystem II protein D2 (chl... [more]
gi|511265852|gb|AGN71959.1|2.3e-3697.4photosystem II protein D2 [Das... [more]
gi|11497520|ref|NP_054928.1|2.3e-3697.4photosystem II protein D2 [Spi... [more]
gi|628819103|gb|AHY80536.1|2.3e-3697.4photosystem II protein D2 (pla... [more]
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BLAST of Spo22445.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0H3VQ29_9LILI1.2e-3698.7Photosystem II D2 protein OS=O... [more]
S4T0Y5_MEDTR1.6e-3697.4Photosystem II D2 protein OS=M... [more]
A0A0K1ZA94_MONFI1.6e-3697.4Photosystem II D2 protein OS=M... [more]
A0A0G2YEU1_9ROSI1.6e-3697.4Photosystem II D2 protein OS=G... [more]
F6I8M7_OLEEU1.6e-3697.4Photosystem II D2 protein OS=O... [more]
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BLAST of Spo22445.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBD_AETGR1.4e-3897.4Photosystem II D2 protein OS=A... [more]
PSBD_NUPAD1.4e-3897.4Photosystem II D2 protein OS=N... [more]
PSBD_NYMAL1.4e-3897.4Photosystem II D2 protein OS=N... [more]
PSBD_VITVI1.4e-3897.4Photosystem II D2 protein OS=V... [more]
PSBD_ACOAM1.4e-3897.4Photosystem II D2 protein OS=A... [more]
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BLAST of Spo22445.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
ATCG00270.18.0e-4097.4photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000484Photosynthetic reaction centre, L/MGENE3D1.20.85.10coord: 18..50
score: 1.
IPR000484Photosynthetic reaction centre, L/MunknownSSF81483Bacterial photosystem II reaction centre, L and M subunitscoord: 18..94
score: 6.28
NoneNo IPR availablePANTHERPTHR33149FAMILY NOT NAMEDcoord: 19..95
score: 6.2

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0006893 Golgi to plasma membrane transport
biological_process GO:0043412 macromolecule modification
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0048767 root hair elongation
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0016556 mRNA modification
biological_process GO:0048255 mRNA stabilization
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0042793 plastid transcription
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0044237 cellular metabolic process
biological_process GO:0065007 biological regulation
biological_process GO:0010467 gene expression
biological_process GO:0033036 macromolecule localization
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0071702 organic substance transport
biological_process GO:0044238 primary metabolic process
biological_process GO:0050794 regulation of cellular process
biological_process GO:0050793 regulation of developmental process
biological_process GO:0050896 response to stimulus
biological_process GO:0048731 system development
biological_process GO:0006810 transport
biological_process GO:0009635 response to herbicide
biological_process GO:0006310 DNA recombination
biological_process GO:0009987 cellular process
biological_process GO:0006436 tryptophanyl-tRNA aminoacylation
biological_process GO:0006260 DNA replication
biological_process GO:0019255 glucose 1-phosphate metabolic process
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006425 glutaminyl-tRNA aminoacylation
biological_process GO:0070588 calcium ion transmembrane transport
biological_process GO:0006882 cellular zinc ion homeostasis
biological_process GO:0009624 response to nematode
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006874 cellular calcium ion homeostasis
biological_process GO:0009590 detection of gravity
biological_process GO:0019388 galactose catabolic process
biological_process GO:0048229 gametophyte development
biological_process GO:0006094 gluconeogenesis
biological_process GO:0005978 glycogen biosynthetic process
biological_process GO:0006568 tryptophan metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0046686 response to cadmium ion
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0019872 streptomycin biosynthetic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005992 trehalose biosynthetic process
biological_process GO:0032502 developmental process
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0051301 cell division
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006281 DNA repair
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0032784 regulation of DNA-templated transcription, elongation
biological_process GO:0010351 lithium ion transport
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0009926 auxin polar transport
biological_process GO:0048825 cotyledon development
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0052544 defense response by callose deposition in cell wall
biological_process GO:0042742 defense response to bacterium
biological_process GO:0050832 defense response to fungus
biological_process GO:0001736 establishment of planar polarity
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
biological_process GO:0010150 leaf senescence
biological_process GO:0006869 lipid transport
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0009789 positive regulation of abscisic acid-activated signaling pathway
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0009408 response to heat
biological_process GO:0002237 response to molecule of bacterial origin
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006525 arginine metabolic process
biological_process GO:0006420 arginyl-tRNA aminoacylation
biological_process GO:0006560 proline metabolic process
biological_process GO:0006522 alanine metabolic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0070143 mitochondrial alanyl-tRNA aminoacylation
biological_process GO:0015074 DNA integration
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0034654 nucleobase-containing compound biosynthetic process
biological_process GO:0006312 mitotic recombination
biological_process GO:0006996 organelle organization
biological_process GO:0031323 regulation of cellular metabolic process
biological_process GO:0060255 regulation of macromolecule metabolic process
biological_process GO:0080090 regulation of primary metabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0051604 protein maturation
biological_process GO:0019521 D-gluconate metabolic process
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006574 valine catabolic process
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0007018 microtubule-based movement
biological_process GO:0009560 embryo sac egg cell differentiation
biological_process GO:0016070 RNA metabolic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0071897 DNA biosynthetic process
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0018105 peptidyl-serine phosphorylation
biological_process GO:0006521 regulation of cellular amino acid metabolic process
biological_process GO:0015031 protein transport
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0007076 mitotic chromosome condensation
biological_process GO:0018279 protein N-linked glycosylation via asparagine
biological_process GO:0047484 regulation of response to osmotic stress
biological_process GO:0034976 response to endoplasmic reticulum stress
biological_process GO:0006364 rRNA processing
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0006357 regulation of transcription by RNA polymerase II
biological_process GO:0009651 response to salt stress
biological_process GO:0009853 photorespiration
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0009640 photomorphogenesis
biological_process GO:0010638 positive regulation of organelle organization
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000338 protein deneddylation
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0016579 protein deubiquitination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0016572 histone phosphorylation
biological_process GO:0009630 gravitropism
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0006554 lysine catabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015979 photosynthesis
biological_process GO:0055085 transmembrane transport
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0034968 histone lysine methylation
biological_process GO:0015768 maltose transport
biological_process GO:0006306 DNA methylation
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006897 endocytosis
biological_process GO:0008152 metabolic process
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0010014 meristem initiation
biological_process GO:0016132 brassinosteroid biosynthetic process
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0046339 diacylglycerol metabolic process
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0007020 microtubule nucleation
biological_process GO:0035556 intracellular signal transduction
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0000911 cytokinesis by cell plate formation
biological_process GO:0045010 actin nucleation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006084 acetyl-CoA metabolic process
biological_process GO:0007165 signal transduction
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0009409 response to cold
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0007264 small GTPase mediated signal transduction
cellular_component GO:0005739 mitochondrion
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0005576 extracellular region
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005663 DNA replication factor C complex
cellular_component GO:0042575 DNA polymerase complex
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0044425 membrane part
cellular_component GO:0000785 chromatin
cellular_component GO:0009523 photosystem II
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0031361 integral component of thylakoid membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0008622 epsilon DNA polymerase complex
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009522 photosystem I
cellular_component GO:0016020 membrane
cellular_component GO:0045298 tubulin complex
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0005874 microtubule
cellular_component GO:0005871 kinesin complex
cellular_component GO:0005829 cytosol
cellular_component GO:0009360 DNA polymerase III complex
cellular_component GO:0005840 ribosome
cellular_component GO:0008287 protein serine/threonine phosphatase complex
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0009579 thylakoid
cellular_component GO:0030130 clathrin coat of trans-Golgi network vesicle
cellular_component GO:0016459 myosin complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005730 nucleolus
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0010287 plastoglobule
cellular_component GO:0016529 sarcoplasmic reticulum
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0070971 endoplasmic reticulum exit site
cellular_component GO:0008250 oligosaccharyltransferase complex
cellular_component GO:0000145 exocyst
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0030132 clathrin coat of coated pit
cellular_component GO:0000015 phosphopyruvate hydratase complex
cellular_component GO:0010319 stromule
cellular_component GO:0005643 nuclear pore
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0005622 intracellular
cellular_component GO:0019898 extrinsic component of membrane
molecular_function GO:0005179 hormone activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0009678 hydrogen-translocating pyrophosphatase activity
molecular_function GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity
molecular_function GO:0004694 eukaryotic translation initiation factor 2alpha kinase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0000049 tRNA binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0008233 peptidase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004722 protein serine/threonine phosphatase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0004814 arginine-tRNA ligase activity
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004634 phosphopyruvate hydratase activity
molecular_function GO:0004435 phosphatidylinositol phospholipase C activity
molecular_function GO:0015423 maltose-transporting ATPase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0005388 calcium-transporting ATPase activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0004830 tryptophan-tRNA ligase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004614 phosphoglucomutase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0005262 calcium channel activity
molecular_function GO:0004843 thiol-dependent ubiquitin-specific protease activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0020037 heme binding
molecular_function GO:0004819 glutamine-tRNA ligase activity
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005488 binding
molecular_function GO:0005085 guanyl-nucleotide exchange factor activity
molecular_function GO:0008242 omega peptidase activity
molecular_function GO:0003774 motor activity
molecular_function GO:0004427 inorganic diphosphatase activity
molecular_function GO:0043167 ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0008408 3'-5' exonuclease activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003777 microtubule motor activity
molecular_function GO:0008017 microtubule binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0003887 DNA-directed DNA polymerase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004616 phosphogluconate dehydrogenase (decarboxylating) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0016832 aldehyde-lyase activity
molecular_function GO:0008442 3-hydroxyisobutyrate dehydrogenase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0003779 actin binding
molecular_function GO:0016887 ATPase activity
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0004185 serine-type carboxypeptidase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003689 DNA clamp loader activity
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0048038 quinone binding
molecular_function GO:0004813 alanine-tRNA ligase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo247170.98Barchart | Table
Spo106270.94Barchart | Table
Spo170100.89Barchart | Table
Spo062010.87Barchart | Table
Spo247070.87Barchart | Table
Spo161960.84Barchart | Table
Spo261260.84Barchart | Table
Spo042770.84Barchart | Table
Spo247080.83Barchart | Table
Spo028510.83Barchart | Table
Spo062000.81Barchart | Table
Spo180440.80Barchart | Table
Spo017480.80Barchart | Table
Spo164840.80Barchart | Table
Spo225720.79Barchart | Table
Spo255380.78Barchart | Table
Spo255550.78Barchart | Table
Spo042780.78Barchart | Table
Spo164850.77Barchart | Table
Spo119040.76Barchart | Table
Spo058750.75Barchart | Table
Spo109470.75Barchart | Table
Spo247180.75Barchart | Table
Spo168950.75Barchart | Table
Spo195600.74Barchart | Table
Spo214390.74Barchart | Table
Spo247190.74Barchart | Table
Spo164900.74Barchart | Table
Spo084400.73Barchart | Table
Spo006260.73Barchart | Table
Spo063830.72Barchart | Table
Spo211710.72Barchart | Table
Spo067570.72Barchart | Table
Spo085240.72Barchart | Table
Spo092600.72Barchart | Table
Spo139570.72Barchart | Table
Spo176180.72Barchart | Table
Spo195180.72Barchart | Table
Spo073550.71Barchart | Table
Spo181790.71Barchart | Table
Spo105500.71Barchart | Table
Spo047030.70Barchart | Table
Spo006940.70Barchart | Table
Spo190780.70Barchart | Table
Spo119930.70Barchart | Table
Spo130530.70Barchart | Table
Spo054550.70Barchart | Table
Spo261270.70Barchart | Table
Spo160880.69Barchart | Table
Spo242320.69Barchart | Table
Spo242020.69Barchart | Table
Spo054120.69Barchart | Table
Spo219630.69Barchart | Table
Spo126600.69Barchart | Table
Spo268710.69Barchart | Table
Spo138740.69Barchart | Table
Spo159380.69Barchart | Table
Spo250040.69Barchart | Table
Spo265260.69Barchart | Table
Spo173100.69Barchart | Table
Spo259360.69Barchart | Table
Spo219460.68Barchart | Table
Spo242410.68Barchart | Table
Spo017510.68Barchart | Table
Spo134190.68Barchart | Table
Spo231920.68Barchart | Table
Spo257070.68Barchart | Table
Spo026720.68Barchart | Table
Spo096180.68Barchart | Table
Spo215950.68Barchart | Table
Spo013130.68Barchart | Table
Spo205660.68Barchart | Table
Spo256160.68Barchart | Table
Spo202810.67Barchart | Table
Spo024850.67Barchart | Table
Spo179230.67Barchart | Table
Spo024980.67Barchart | Table
Spo224580.67Barchart | Table
Spo175080.67Barchart | Table
Spo119190.67Barchart | Table
Spo104150.67Barchart | Table
Spo175890.67Barchart | Table
Spo195300.67Barchart | Table
Spo139530.67Barchart | Table
Spo155650.67Barchart | Table
Spo199750.67Barchart | Table
Spo036220.67Barchart | Table
Spo163840.67Barchart | Table
Spo094130.67Barchart | Table
Spo003950.67Barchart | Table
Spo013750.67Barchart | Table
Spo164860.67Barchart | Table
Spo087710.67Barchart | Table
Spo245940.66Barchart | Table
Spo007510.66Barchart | Table
Spo011810.66Barchart | Table
Spo012590.66Barchart | Table
Spo022030.66Barchart | Table
Spo030770.66Barchart | Table
Spo039730.66Barchart | Table
Spo045870.66Barchart | Table
Spo051920.66Barchart | Table
Spo053850.66Barchart | Table
Spo057060.66Barchart | Table
Spo076940.66Barchart | Table
Spo105630.66Barchart | Table
Spo110210.66Barchart | Table
Spo111900.66Barchart | Table
Spo117530.66Barchart | Table
Spo135140.66Barchart | Table
Spo140860.66Barchart | Table
Spo159970.66Barchart | Table
Spo164270.66Barchart | Table
Spo166890.66Barchart | Table
Spo172350.66Barchart | Table
Spo202420.66Barchart | Table
Spo208290.66Barchart | Table
Spo209180.66Barchart | Table
Spo213410.66Barchart | Table
Spo229700.66Barchart | Table
Spo233550.66Barchart | Table
Spo001040.66Barchart | Table
Spo252340.66Barchart | Table
Spo236110.65Barchart | Table
Spo214910.65Barchart | Table
Spo248610.65Barchart | Table
Spo214190.65Barchart | Table
Spo029410.65Barchart | Table
Spo202150.65Barchart | Table
Spo104430.65Barchart | Table
Spo103180.65Barchart | Table
Spo098190.65Barchart | Table
Spo069270.65Barchart | Table
Spo059480.65Barchart | Table
Spo056740.65Barchart | Table
Spo045710.65Barchart | Table
Spo236550.65Barchart | Table