Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GACCTGATGACCTGTTTCGACAGCTCTACCTGCGATAAGGTCGAGAATGAAAACAGAAGGTGTTCCAAAATTCAAACAAAGGACCTTCAATTTCCCTCCGCTGGTATTTCCCCACTCTCTCTCTCTTTTCTGCAGGTACTTCCTCAACTTTGCGCTTGTTTGTTTGTTGATTATTATGATATTTCAAAGTATCTTTTATGTATATTGGGATCTCATGCTTCTATTTTAACTTTCTCTCTAGGGTTTTATTAGTATTTTCTAGGGTTTTTCTTGTTCTTTGGTGCTCCAATTGTGCACTTTGTTGGTCAAATTGTTACATTTGCTGAAGTTTTCTGCTTTTGTTCAACCTTGTAATGTCTGAACTTTTTAGATTTCACTAGAACACTGCTGATTTCTCTGGGGTATTTTATCGAGCTGGTGGGTGGTTTTTTTGTGCCTTTGTGTGGCTAAGTTTTGACTTGTTTCTTAACAGATCAATCAGATCCTCTCTTCCTAAATGTGTTTTAGTTCTAACTTATTAATGTTACTCATAGCTAATTGGTGGTAGATTGAAAGTTCGAGACTAGGATATATAGATTGCAAATTAAATTAATGCGGTTTCCGTTCATGAATTCTCAATTGACTGATAAATTCTTTGTAAGGATAGTCCAAATTTCTTTGACCAATAAGCCCACAGTTTATTCAGAATTATCAACTCAATCCACGGAATTACGGTGTATTTGGTTTGCTGCCTTCTGTTGTGGATATCTCATATGGTTTATGTTGGATCATCTTTAAGTGATAAAATAATCAAAGTGATTCCCATTACTTTTATCGTTTATTAACTTTACTTCTCTAAGCTGGAAACTGAAATTGCTATTTGGCCCATTTATCCTCAGGAATTCAGGATAACACGGCGTTCTTGACTGTGAATCTAAATGGCGGTGAGCACTTACTTTTTGTCACATTTGTGATGTCTAATGCTTTAATGAATCAATTAAGTAGATTAATTGGTCTAATTTGATTGATGAAATTTTAATGTTTTTATGTCCCTGATGGCAATCATGAGGAGAAACATTTTCACTATGCTTTTACTCAATCCACTACATAGTGTGGTCGTGTGGGGAATTGGGGACGGAATATTGAAATTTCTCACTTCCATTTGGCCTTCTTATTACTCATTTTATGCTGGCTTCTTGGTCATTCATTATGATTAGCACCCCCAATTTCCCAAACATATTTGGATTACAGAATTTCTCCTGCTCAATGCAATAGTATCCTTATAATTTAAATCGAGTTAGGTGATGTCATGGTATGCTTAAATAATTGACCAACTTGCCTTCTTAACTTTATCTATTGACTTATACGGAATACATTATGCTCTTCTTCTGCCCCCTTATGACTGTGCGAGTGCCGAGTGGTATGTGTGGGATGCTGAAATGCAACTGTTGCAAGTCCTTGCAGTTTTGCGTGTAGCATTGCTTGTATGGACCTAATTGTCTGAAAACGCATACTTCTGTTTGGCCCACTTATACGGGGAAGGAAGGAGAGTGGTTACGTTGGTATTTTGTGATTAGTTTCAGTTTCAGGTGTGTTAGATTTTCCACCAGATTGTTGTCTGTTTTATATTTTGACTGTCATGATGAAACCTTTTCTTTAATAGTTGTGCTCCTTTGCAGACCGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTAACTGGAAAACCTGTCATCGTGAAGTTGAAGTGGGGAATGGAGTATAAAGGTAATTTTCCCGTGATCAGGAAATCTAATTTTGATGTTTTGAGTTTTTTTTCCTTTTTATTTCTCTTCAGTTTCATGACGTTCTCTTAAACTATCTTTCGCTTTCATTTTGGCTGGCAAGTCCAACGACTCAAAATTAGTTTTTACAGAAAAAGAAAGGGTGAAATTGCCATTTTCTTTTGTGTGAAGCATTTATTTGAGGTGTAACTGGTTAATTTCAATTGGCCACGGGGAAATATATGTGACAATGCTTTCATATGATCTTTTGCAGGTTATCTTGTGTCTGTTGATGGCTACATGAACCTACAGGTGCTTACTGAAAACCATTTTGTTTGACTGCATTTCAATGATACTTGTTCTGAACTAGTGGATGATTTTCTTTGTGTTGTATAAACTTGTATTGTTTAATATCATAGTTGCTTATCTTTTACATTGATGACTTGCCTGCAGCTGGCAAATACTGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGAGAGATCCTCATCAGGTTATCAATGTTTTCTTTCAGTATCTACTGTTATCGCAAAGTGAAAATTCTTAGTACAGGATTGCACCTCTGATCTTTTTAGCAATATGGAGTACAATGTCTGCAACTTCTGAATTGTGCTTCGAAGTTAGAATACACAAACATTTTGCAACTGGTTCCATCTATTTTAATTGGTATAACCAGCTGGTGTTGGGGTGACTTGTTATACTTTTGAGTTTTGAGGGATGGGTTATATACTTATATATGTTGGGAGGTGACTTTTGCATTGTGTTGGAGTGATTTCTTATTTATTGGGAGGCTCCTTTCTGCATGCCTCGTCCACAAATCAGGTGAGATTGAGCTTATGAGATTGGTGCTGTGGTATGATGGTTTTATAGAGTAAATATTGTCTGATTTGCATTCGCTCATAACAGACGATGAACATCAATTCTTCTGATCTAGTCTTTCATGTTAACTTGTTGCTGAGTTTGTTTAGTTTACATGTTTTTTATTTCATCCCCAAGCTCCAGAATCTAACACCACCTTGTATTTCTGGGGTATTATTTCCCATAGGTGCAACAATGTCCTATATCTTCGGGGTGTTCCTGAGGACGAGGAGATAGAGGATGCTGATAAAGACTGACATACAAGCTTTTAGGATTGTTATATGTTGCAGATCTATCACAGCCAGCTCATGGGAGACGGATATATTAGGGCGTAGAAGTTACTGGCTAAGATGGGTGTGATACATGACATACAATTTACAGAGTGCGTATTATGTAAAAGAATCGCTTAATATGGCGTAACAAAATATTCGTACGAGTTTTATGGAAATGGAAATCTGGTTAGTTGGATGTTGTAGTTTATGACCTTTAAAGAGCTCCTTAATATCCCCAGAACTTGGGAGAATTCAGTCATATTGCTCCTTGCCTCCTTGGAAACCACCTAGATTTAAGAGATTCAGATAGGATACGTACTCCATTAAAAAGATTTCACATTTTCTAGAAATTACGTTCGGAATTTTTGATAAAGTACCCTTCTTCCCCCTTCTAACAAAC GACCTGATGACCTGTTTCGACAGCTCTACCTGCGATAAGGTCGAGAATGAAAACAGAAGGTGTTCCAAAATTCAAACAAAGGACCTTCAATTTCCCTCCGCTGGTATTTCCCCACTCTCTCTCTCTTTTCTGCAGGAATTCAGGATAACACGGCGTTCTTGACTGTGAATCTAAATGGCGACCGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTAACTGGAAAACCTGTCATCGTGAAGTTGAAGTGGGGAATGGAGTATAAAGGTTATCTTGTGTCTGTTGATGGCTACATGAACCTACAGCTGGCAAATACTGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGAGAGATCCTCATCAGGTGCAACAATGTCCTATATCTTCGGGGTGTTCCTGAGGACGAGGAGATAGAGGATGCTGATAAAGACTGACATACAAGCTTTTAGGATTGTTATATGTTGCAGATCTATCACAGCCAGCTCATGGGAGACGGATATATTAGGGCGTAGAAGTTACTGGCTAAGATGGGTGTGATACATGACATACAATTTACAGAGTGCGTATTATGTAAAAGAATCGCTTAATATGGCGTAACAAAATATTCGTACGAGTTTTATGGAAATGGAAATCTGGTTAGTTGGATGTTGTAGTTTATGACCTTTAAAGAGCTCCTTAATATCCCCAGAACTTGGGAGAATTCAGTCATATTGCTCCTTGCCTCCTTGGAAACCACCTAGATTTAAGAGATTCAGATAGGATACGTACTCCATTAAAAAGATTTCACATTTTCTAGAAATTACGTTCGGAATTTTTGATAAAGTACCCTTCTTCCCCCTTCTAACAAAC ATGGCGACCGTCCCAGTTAACCCAAAACCTTTCTTGAACAATTTAACTGGAAAACCTGTCATCGTGAAGTTGAAGTGGGGAATGGAGTATAAAGGTTATCTTGTGTCTGTTGATGGCTACATGAACCTACAGCTGGCAAATACTGAAGAGTATATTGAAGGCCAGAAGACTGGAGATCTTGGAGAGATCCTCATCAGGTGCAACAATGTCCTATATCTTCGGGGTGTTCCTGAGGACGAGGAGATAGAGGATGCTGATAAAGACTGA MATVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDGYMNLQLANTEEYIEGQKTGDLGEILIRCNNVLYLRGVPEDEEIEDADKD Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|902200722|gb|KNA13809.1| (hypothetical protein SOVF_113340 [Spinacia oleracea]) HSP 1 Score: 184.9 bits (468), Expect = 6.100e-44 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|731312030|ref|XP_010672300.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 178.7 bits (452), Expect = 4.400e-42 Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|731378546|ref|XP_010668211.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 177.9 bits (450), Expect = 7.500e-42 Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|719966333|ref|XP_010258634.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Nelumbo nucifera]) HSP 1 Score: 173.7 bits (439), Expect = 1.400e-40 Identity = 82/88 (93.18%), Postives = 86/88 (97.73%), Query Frame = 1
BLAST of Spo22507.1 vs. NCBI nr
Match: gi|951003969|ref|XP_014507745.1| (PREDICTED: probable small nuclear ribonucleoprotein F [Vigna radiata var. radiata]) HSP 1 Score: 172.9 bits (437), Expect = 2.400e-40 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R4D7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_004180 PE=3 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 4.300e-44 Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 1
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FYC9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g006230 PE=3 SV=1) HSP 1 Score: 178.7 bits (452), Expect = 3.100e-42 Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DVD8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_015110 PE=3 SV=1) HSP 1 Score: 177.9 bits (450), Expect = 5.200e-42 Identity = 84/88 (95.45%), Postives = 87/88 (98.86%), Query Frame = 1
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: A0A0S3R856_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.01G478900 PE=3 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 1.700e-40 Identity = 83/88 (94.32%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Match: I3SY08_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1) HSP 1 Score: 172.9 bits (437), Expect = 1.700e-40 Identity = 82/88 (93.18%), Postives = 85/88 (96.59%), Query Frame = 1
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_ARATH (Probable small nuclear ribonucleoprotein F OS=Arabidopsis thaliana GN=At4g30220 PE=2 SV=1) HSP 1 Score: 165.2 bits (417), Expect = 3.100e-40 Identity = 76/88 (86.36%), Postives = 83/88 (94.32%), Query Frame = 1
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_XENLA (Small nuclear ribonucleoprotein F OS=Xenopus laevis GN=snrpf PE=3 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34 Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_HUMAN (Small nuclear ribonucleoprotein F OS=Homo sapiens GN=SNRPF PE=1 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34 Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_MOUSE (Small nuclear ribonucleoprotein F OS=Mus musculus GN=Snrpf PE=1 SV=1) HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34 Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Match: RUXF_BOVIN (Small nuclear ribonucleoprotein F OS=Bos taurus GN=SNRPF PE=3 SV=2) HSP 1 Score: 144.1 bits (362), Expect = 7.500e-34 Identity = 64/79 (81.01%), Postives = 74/79 (93.67%), Query Frame = 1
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT4G30220.2 (small nuclear ribonucleoprotein F) HSP 1 Score: 162.2 bits (409), Expect = 1.500e-40 Identity = 74/88 (84.09%), Postives = 82/88 (93.18%), Query Frame = 1
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT2G14285.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 112.5 bits (280), Expect = 1.400e-25 Identity = 51/61 (83.61%), Postives = 57/61 (93.44%), Query Frame = 1
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT2G43810.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 77.8 bits (190), Expect = 3.700e-15 Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = 1
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Match: AT3G59810.1 (Small nuclear ribonucleoprotein family protein) HSP 1 Score: 77.0 bits (188), Expect = 6.400e-15 Identity = 33/69 (47.83%), Postives = 46/69 (66.67%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22507.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22507.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22507.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22507.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
|