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Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTACACTACTAACGTAAATGTTATATAATAGAAATAAAACTAGAAGTTATATAACCTCCAATATTCCGTATTTCGGAATTCGGATAATAAAAATGGCGACCACCGCAGCACTAACCCAATTCCTCCTCCACCGCCACATCCTCCGCCCACTCTGCCTTTCAACCACCGTCTCATTCTCTCTGTTCCACAACCCAAAACTATCTATCTCTCTCTTAAAAACTCAACCACACCCACTTTCTTCATTTCCACCCCTCTTTTGCTCCCTTGAAGAAAACAAAAACCTTGTAGATGTCGAGAATTTGAAGGAAGATGAAGCAACCTCAGAACCTAAAATCCTTAAAATTAAGGAAGGAGAAGTGCCCAATTTAACAGTTAAGGAAAAGAAGGATCTTTGTTCTTATGCAAATAGTCTTGGTGATAAGCTCAAGTCTCAGCAAGTGGGCAAATCTGGTGTTACGGATAATGTTGTTTTTGCATTGTCTGAAACTCTCGAGGCTAATGAACTTCTCAAGGTTTAATTTGATTAATTATTTCTTGTTTTATGTTTTTAAGTGTGGTTTTGTTATTTTGGATGATATAAATTGTGAAATTTGTGTGTTTGATTTTTTTCTCCAAATATGGGTGAATTATGAGTTTAATGATTAATTATACTTGAAAATTTGTTTGAATTTGACTTTGAGTTTGTTTGATTTTAGTTGTTTGATTGGGGTTGTAAATTGAAGTTCAGGGGGTTAGGATTTTGCTGTTTGGTCGAATTTTGTTGATTGTAATGGTTGTGAGATTAGAAAATTGATATTTTTTGTATGGAGCACACAAAAGAAAGAAGCTTCTGGATTTGAGGGAGAACAATCGTGTTATCAAGTTTTATTCTGTATGGAAAGGGAGAATAATTGGCTTTTCGAGTTTTATTCTGTATGGAGTACATTGAAATGGTAAGGGAGTTACATTTTAGAGCATGCTTGAAGTAAGACGCGGGAATACATTAGGGGGGTAAGACTAATTAAAGTAAAGGTGGGGTTGTCACCGGTCAAGGTGGAGGTGGTGGTTATATAAAAGGCTTGGGTGGAGAAACCAATAGTGGCTAGCAGTTAATTTCCGAGGTTTGTAAATGGTGTTATATCTCGATTACATATTTCGTAATTACCCTGAATTTGTAGAGGGGTTTGTGAAGTTTGAAAAGTCGGGAGATTGTTAGGGAATTTTAAGCCTTTGGGAGTGTCATTTGTGATTCAATTACCTCTAGTACTTGTACTTTCTGGAGAAATCATCCCCATTTAGGTCTAGGGATTATTTGGGTATATTTAAGGATTTGGGAGTGGGATTAGTTAGTACTTAGTACTGTTACCTTCTCTAGAAACTTATTATTCATGTTTAGGACTCGAGTAAGGGGGACTTTTTGGGGAAATTAAGGCTTTGGTTGTGTGATTAGCTAGTACCGGTATTTTCCCGGTATACCGTATCTTGGGTGAAGAGTAATTTATAAATATAGTTTGTGTGTAATCAGTTCTCCCAACTATATGATAGTAGTAGCTTTTACAATTGGTCTTATGACTCTTGCCCTCTAATTGAATTATCTTGTTTCAGCATTGGTTTGTTTGTTCAATATTTAGAGTGGTATAAGTATTCTGCTGTTTGATTTCATTAAGCTAATATGGGATTGAGGTAAAAGTAGAAAGATTGGTTTGTCTGGTTCATTCTACATTGTATCTGGTTAATTGTTGCAAATTCAAGCCTTGTTCATTTCATGAGATGATGTGTTAATGCTGATTAATTTGGTTTCTTTTGCGATACTGTTTCTGCATTGTGTGTAAGGCCATAATCCTGGCCTTATTATGGATAAAGAAATGCTGAATTTTCTGTGTTCTTACTTGTTAACCAAGTTAATGTATTATGTATGGAAACGTAAGAACACTCCCCCCCTATCTGTAAAAGCAGCAACCTAAACTTGAAATTGAACCGAGTTACATAAACGAGGACTTGAAAAACAAGAAATGAGTGATGCACCTGTCAATTGCTGTGGCTATTTCAGATGTTTTTGTTAGATATTGTCATCGCTTTTGTTCCGACATATGCGACAGACAATTTGTAGTTGATTTTGGTAATCTTATCTCCTTTTTAATGAGCCTTGTTGCTAATTGTATGGGTAAAACAGCTTAAGATACATAGAACCTGCCCAGGGGAGATGGATGATATTGTTAAGCAACTAGAGATTGCTACTGCATCTGTTGTTGTAGGGCAGATTGGCCGAACAGTCATATTTTATCGACCAAGCCTTACAAAGTTAGAGGCCGAGAAGAAGAAAGAGCGTGCTCGTAAGCTTTTTGCTCAGAAGAGGGAGAGGTCCCATGCCGCTTTCATGGTAAAGAAAAATAGTCATAGTACACCCAATATCTGTGATGTAGCAATTCCTTTATGTACTGTATTAGTTTCTGAAAAGTTCTCTATGTGAAAAATGCAGAAAAGAGAACAAGAGCCAAGACAGCCAGGAGGCACTGGACGAGGTCGGTTCGGAAATCGACGATCTGAGAAGGTTGCCTCGTAGGTTAACTGTTTGCTATTGTAGCTCAAATTAGTAGCACCCCCTTTGTTATTAGTGTAGAATGTAGATTCATGTTTATGCTACTTTTTTGTAAAATTTTGAGTGTCTAGAATCCTGAGAAATGCTTATGTGCTTCTTTAAACTGAATCCTTTTTTGTTTATAAGAAATGAAATTATTTTGAGCCGAACGAGTGCGAGCCTCTATGAAAAAAACTCATTGTAAATAGTTCCACACTCATCTTTGGGCAAAGTTTACACTACTAACGTAAATGTTATATAATAGAAATAAAACTAGAAGTTATATAACCTCCAATATTCCGTATTTCGGAATTCGGATAATAAAAATGGCGACCACCGCAGCACTAACCCAATTCCTCCTCCACCGCCACATCCTCCGCCCACTCTGCCTTTCAACCACCGTCTCATTCTCTCTGTTCCACAACCCAAAACTATCTATCTCTCTCTTAAAAACTCAACCACACCCACTTTCTTCATTTCCACCCCTCTTTTGCTCCCTTGAAGAAAACAAAAACCTTGTAGATGTCGAGAATTTGAAGGAAGATGAAGCAACCTCAGAACCTAAAATCCTTAAAATTAAGGAAGGAGAAGTGCCCAATTTAACAGTTAAGGAAAAGAAGGATCTTTGTTCTTATGCAAATAGTCTTGGTGATAAGCTCAAGTCTCAGCAAGTGGGCAAATCTGGTGTTACGGATAATGTTGTTTTTGCATTGTCTGAAACTCTCGAGGCTAATGAACTTCTCAAGCTTAAGATACATAGAACCTGCCCAGGGGAGATGGATGATATTGTTAAGCAACTAGAGATTGCTACTGCATCTGTTGTTGTAGGGCAGATTGGCCGAACAGTCATATTTTATCGACCAAGCCTTACAAAGTTAGAGGCCGAGAAGAAGAAAGAGCGTGCTCGTAAGCTTTTTGCTCAGAAGAGGGAGAGGTCCCATGCCGCTTTCATGAAAAGAGAACAAGAGCCAAGACAGCCAGGAGGCACTGGACGAGGTCGGTTCGGAAATCGACGATCTGAGAAGGTTGCCTCGTAGGTTAACTGTTTGCTATTGTAGCTCAAATTAGTAGCACCCCCTTTGTTATTAGTGTAGAATGTAGATTCATGTTTATGCTACTTTTTTGTAAAATTTTGAGTGTCTAGAATCCTGAGAAATGCTTATGTGCTTCTTTAAACTGAATCCTTTTTTGTTTATAAGAAATGAAATTATTTTGAGCCGAACGAGTGCGAGCCTCTATGAAAAAAACTCATTGTAAATAGTTCCACACTCATCTTTGGGCAAAGT ATGTTATATAATAGAAATAAAACTAGAAGTTATATAACCTCCAATATTCCGTATTTCGGAATTCGGATAATAAAAATGGCGACCACCGCAGCACTAACCCAATTCCTCCTCCACCGCCACATCCTCCGCCCACTCTGCCTTTCAACCACCGTCTCATTCTCTCTGTTCCACAACCCAAAACTATCTATCTCTCTCTTAAAAACTCAACCACACCCACTTTCTTCATTTCCACCCCTCTTTTGCTCCCTTGAAGAAAACAAAAACCTTGTAGATGTCGAGAATTTGAAGGAAGATGAAGCAACCTCAGAACCTAAAATCCTTAAAATTAAGGAAGGAGAAGTGCCCAATTTAACAGTTAAGGAAAAGAAGGATCTTTGTTCTTATGCAAATAGTCTTGGTGATAAGCTCAAGTCTCAGCAAGTGGGCAAATCTGGTGTTACGGATAATGTTGTTTTTGCATTGTCTGAAACTCTCGAGGCTAATGAACTTCTCAAGCTTAAGATACATAGAACCTGCCCAGGGGAGATGGATGATATTGTTAAGCAACTAGAGATTGCTACTGCATCTGTTGTTGTAGGGCAGATTGGCCGAACAGTCATATTTTATCGACCAAGCCTTACAAAGTTAGAGGCCGAGAAGAAGAAAGAGCGTGCTCGTAAGCTTTTTGCTCAGAAGAGGGAGAGGTCCCATGCCGCTTTCATGAAAAGAGAACAAGAGCCAAGACAGCCAGGAGGCACTGGACGAGGTCGGTTCGGAAATCGACGATCTGAGAAGGTTGCCTCGTAG MLYNRNKTRSYITSNIPYFGIRIIKMATTAALTQFLLHRHILRPLCLSTTVSFSLFHNPKLSISLLKTQPHPLSSFPPLFCSLEENKNLVDVENLKEDEATSEPKILKIKEGEVPNLTVKEKKDLCSYANSLGDKLKSQQVGKSGVTDNVVFALSETLEANELLKLKIHRTCPGEMDDIVKQLEIATASVVVGQIGRTVIFYRPSLTKLEAEKKKERARKLFAQKRERSHAAFMKREQEPRQPGGTGRGRFGNRRSEKVAS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22530.1 vs. NCBI nr
Match: gi|902238263|gb|KNA25096.1| (hypothetical protein SOVF_009630 [Spinacia oleracea]) HSP 1 Score: 444.1 bits (1141), Expect = 1.700e-121 Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1
BLAST of Spo22530.1 vs. NCBI nr
Match: gi|731358495|ref|XP_010690781.1| (PREDICTED: uncharacterized protein LOC104904275 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 303.9 bits (777), Expect = 2.700e-79 Identity = 174/247 (70.45%), Postives = 199/247 (80.57%), Query Frame = 1
BLAST of Spo22530.1 vs. NCBI nr
Match: gi|697169984|ref|XP_009593902.1| (PREDICTED: uncharacterized protein LOC104090505 [Nicotiana tomentosiformis]) HSP 1 Score: 178.7 bits (452), Expect = 1.300e-41 Identity = 122/256 (47.66%), Postives = 168/256 (65.62%), Query Frame = 1
BLAST of Spo22530.1 vs. NCBI nr
Match: gi|698532967|ref|XP_009763301.1| (PREDICTED: uncharacterized protein LOC104215241 [Nicotiana sylvestris]) HSP 1 Score: 176.8 bits (447), Expect = 5.000e-41 Identity = 122/256 (47.66%), Postives = 167/256 (65.23%), Query Frame = 1
BLAST of Spo22530.1 vs. NCBI nr
Match: gi|460370224|ref|XP_004230954.1| (PREDICTED: uncharacterized protein LOC101264983 [Solanum lycopersicum]) HSP 1 Score: 174.5 bits (441), Expect = 2.500e-40 Identity = 127/262 (48.47%), Postives = 165/262 (62.98%), Query Frame = 1
BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S021_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_009630 PE=4 SV=1) HSP 1 Score: 444.1 bits (1141), Expect = 1.200e-121 Identity = 234/236 (99.15%), Postives = 235/236 (99.58%), Query Frame = 1
BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BJU0_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g216670 PE=4 SV=1) HSP 1 Score: 303.9 bits (777), Expect = 1.900e-79 Identity = 174/247 (70.45%), Postives = 199/247 (80.57%), Query Frame = 1
BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HKX7_SOLCH (Putative ovule protein OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 176.0 bits (445), Expect = 5.900e-41 Identity = 105/183 (57.38%), Postives = 135/183 (73.77%), Query Frame = 1
BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: K4B3P0_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 174.9 bits (442), Expect = 1.300e-40 Identity = 127/254 (50.00%), Postives = 161/254 (63.39%), Query Frame = 1
BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Match: M0ZU34_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400003128 PE=4 SV=1) HSP 1 Score: 174.1 bits (440), Expect = 2.200e-40 Identity = 105/183 (57.38%), Postives = 134/183 (73.22%), Query Frame = 1
BLAST of Spo22530.1 vs. ExPASy Swiss-Prot
Match: YQEI_BACSU (Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) GN=yqeI PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 7.200e-8 Identity = 34/96 (35.42%), Postives = 55/96 (57.29%), Query Frame = 1
BLAST of Spo22530.1 vs. TAIR (Arabidopsis)
Match: AT2G21350.1 (RNA-binding CRS1 / YhbY (CRM) domain protein) HSP 1 Score: 140.6 bits (353), Expect = 1.400e-33 Identity = 104/221 (47.06%), Postives = 135/221 (61.09%), Query Frame = 1
BLAST of Spo22530.1 vs. TAIR (Arabidopsis)
Match: AT4G39040.1 (RNA-binding CRS1 / YhbY (CRM) domain protein) HSP 1 Score: 138.7 bits (348), Expect = 5.300e-33 Identity = 84/175 (48.00%), Postives = 115/175 (65.71%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22530.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22530.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22530.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1
BLAST of Spo22530.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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