Spo22550 (gene) | SpinachBase

Overview


Name	Spo22550
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	24 kDa RNA binding protein
Location	SpoScf_01922 : 67801 .. 83024 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGATGGGATCAGAAACTTCCGAGTTCTGAAGCTCCTCACTCTCACTTTGTCTTCTTTTTCCCTGGTATGATTCTCTCTTCTGTGTTTTTATTAAAATTAGGGTTATGTTTTTCGCTTGTAATTGTTGAATTAATTAGGGTTGATTTTAGTTGAATTTGCAAATTGATTCCGGACAACAACCTCACTTCTTCCCTGACCTTAAGATTTTGGTGCGTAATCTTCCATTTAATGTTGACAGTGCTGAGCGCGATGGGTTGTTCGGTGCTGCTGGTACCGTTGAAATGGTTGAGGTGAGTTTACGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN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GAAAGATAAATCCCAAATCTTTTGCTGGGTTACTTCATTTTCTGTAATTAGGCATTTACCACCCATGCTTGGCTCAGGTTCTCAGGAATGACAGTAAGGTTCTTGTCTCCGATCTCATTAGATATTTCCGACACATTTCCGGATTCCTCATTTTCTTCAGTTGTTACCTTTGCTGGACTTTTTTTTTTCTGACCATTTTTATCCTCATCCCTCATTTTCTCAACCAATCCTGTTTTCTCTCTTCTTAGTTCGTCCTCGTCTAAGCTAGCAACATTTCCCCTGTACTCATCCTCTTCTGCTACATGTCCTGGTGGTACAAAGGCAGTGTGTTCCATTACTTGTTCAATATTGTACACGTTCTCCCTATCCACTTGAGTTTCTAATACAGTTGCCCTTAGTGAATTGGAAGAATTGGGTATGTTGTATTTTTTTTTGGCGTAATGTATTTCTATCATAGATTTTTACGTAAATCACGTTTATTAAAGCATTATCATTGTCATTTGTGGTTGGTTAAGCTATTATACCACCAATAGTTACTATTTCTGTTTATTGTTTCAATGATGGTTCAATAGTTCGTCTTTTTTCCGAGATGTGGTTGCTGGTTATAATGTTTGATTTAGAGGTGGAGAACTATATAGGGCGAATACGATTAGCTTAGAGCCTTCAAGTGTTGGCGGTGATTTGGAATGAATTGTAAGTTTTGGTGTTCGATATGTTATACTTCATTTTGCATGCAATAGCATGGAAGTTGTAGTAGTCAAGTTTTAAATAGGATGTAGGATGTAGGATGGAGAGCTTAACGTTATGAATCAGTCAGTACTTTCAAGGTGAGTTTCAAGAAGGCTTTTACCTGTTGTGGGTTATTTACTCCAATTGGGCCCTAGATAATTTGTGTGTGTTGGTCTTCTCTTTGGTGTAAAGTATTCCAAACATCTATTTGTTTGGTCAAGGAGGAAACAGTAGTTCAATTGTTGTGTACACAGAGTTACATTAGTTGATTTTAACCATAGAAACAAGCTGACCTACCATGTTTCTTATGCTTTTAGGTTCATTTTTGTCTTAGAAGTCTTACAAACATTTTACTTTGTCATTTAACCGTGTTAATCATCTTGTGTAACAGGTTATGGGACTTGGCAAGGGAAATGAAGGAGAGACGAGTAGAAGTTCGAAAAGAAAGAAAGGCATCTTCCATCCAAATCAGGTTACGAAAAAGGATACTTATCTTCTGAATTAGGGCATGTTAATGTTTCTTTTAAGTATCTGGAGTTCATCCTCTTTTCAAGACACTCCATTGCCTATGAGGCGAGAAGTGTGATGTTAGGATAAATATACCTAAATTGAAATGTGGAGAAGCCGATAATTTTGAGTGCAATAATTTTCTAATATTTAAGTAGTTTTAGATGAAAATTTGAAAATAAGTTTTTTGATTTACAAGTCATATATATATATTAGCTACGGAAATTGAAAGCAAGTAGTGGAAAGTTAAGGATTTTACGGATTATACAAAGTTGACAATTTCAAGTGCTAAAGAAGTTCATTTTGAGAGTAAATACAATTCTATTCCGTCTGAATATAGTATAGATATAATTTGGTGTAGTGTGAACAATATTTTCAATGAGAAATTTTATGAAATGGTTGATGCAGAAAATTATTTCAAAAGATTATGTATATTTTTTTGCCAAAGCATTAGATTTGATATACTATTGAAATTCATGGTCAAAATATTGACCAAAGAAAAAGGAGGATATACTATTGAATTGGGTATGCATTTTCTGATCATCTTTTCTCTTGGTCAATAGTATATCTCCTTTTTTTTTTGGTCAATATTTTGACCAAGAACTTCAATAGTATATCAAATCTAATGCTCTCGCAAAAAAATACACATAATATTTTGAAATGATCTTCTGTATAACCATTTCATTAAATTTTCCATTGAAAATATTGCTCACACTATCCCAAATTATGTCTATACTATATGCAGACGTAATAGAATTGTATTTGTTCTCAAAATGAACTTCTTTAACACTTGGAAATGTCAACTTGTATGGTCCGTAAAATCCTTAACTTTTCATCACTTGCCTTCAACTCTAACATATATATATATATATTTGACTTGTAAATCAAAAAGCTTATTTTCAAATTTTCATCTAAAACTACTGTGAATATTAGAAAATCATTGCCCTCATAATCATCGGCTTCTCCACATTTCAATTTAGGCATATGCGTCATAACGTCCACTTCTCGCCAATACTTAAAAGAAACATTAACATGCCCTAAATTCATCATGTCGAAAACCCTCCAAAACAAAAGAAGCCCCAAATTATTTCAATTTCATAATTCTAGGGTTCTACGGTCGAGAAAGAAGGCGAATCATCTGAATTTGGTAATTTCTGTCACATTATTTCAATTTCATAATTCTAGGGTTCTATTGTTGAGAAAGAAGGCGAATCTCTGAAATTGGTAATTTCTGTCACATTATTTCAATATCATAATTCTAGGGTTTCCATCTTCCTCCTATTCATGAAATGAACAACCGCTTTTGAATTGCTAAATGTAATCCAATTCTCTCGGGAGTTTCGTTTATATACTACTTTTGGGGAGTTTTATTTGTTTCTGGGTTTTGTTCTTTTGGTTTTTGCTTCGTGATTGTGTTTAATTGAGGAGTTAATGAAGTCGGCCCCATTATGTGTTTTCTTTAATTGTCTTTGTGTTAATTTTTTATGTTTTTTTTTTCAATGGTTAGCTTTTGAATTACGTTTTGTCTGTAATTGCTTCATGATGCTGAAATTTGTGAGTCCCGAAGTGTTGAGATATCTTTGAAAAATTAGAATTGATTTTTTAGATTACTTGTAGTTTCTATCTGAAATAGATGATTTTTATTCATTCCTGCCTCCACAATTATTTCTTTTTTTATGTATATTATTTGCGTCACTCTTAATTTGTAGGTGGACCTTAATCCATTCCGTTTCACCATGGCTTTCAAAATTACAAATCAAATGTGGGATTCGGTTTATAACAAACTCATTGTTTCTGAAAACGGGAAAGAGATTGAGAGACTATTTGCTGAATATGGCAGAGTTTGTTTAGAAGTCACAATAGAGAAGAGTAATTTTATTGCTCAGTTTTACTTGTTGTTATATCCCCAATCCAGTTTCAAAATCCTAAGGTTTCCACCTTCACCCAACTTCCCTAATTTCACTGAGTTTTGCAAATTATTTTCACTCACTGTGTATTTAGGCATCATATACATTTATAGTCATATAAATAGATGTTCATTTCTATTTCTGCAATTATTTCATTTTCCGTATGATTGTTTCAGCTCTGTGTGTTAGGGTGTGTAGTAATGACGGACAGATTTTAAATAGATGTTCATTTCTATTTCTGCAATTATTTCATTTTCCGTATGATTGTTTCAGCTCTGTGTGTTAGGGTGTGTAGTAATGAAGGACGGATTTTAAAATTTACTGTCTTTTTGAAAAATAATTTCTTGAGAAGATAAAGACTTTCCAAATCACAAATCTTTTGTCGGACTACTTTTATTTTGTGTAATGAGACATCGTTTATGCGAAGTATATACAAATGGATAGTAGTATTAATAGAGTAGTTTCTTGCTGTTAATTCAATCCTAATTGATTTTTTTAAGTTGACAAGGTGAGGTTGACAGCCATCGTGTGCTTATTAGATCTGAACCAGTTATTGAGGTACTATCTATTACTTTGCATAACCAAAACCTAAACGATTCCGCTTCGGATGACAGCAGCAAAGAAGCGTTGGAGCTCTATGGTACTGTTTATCTCCATGATAGTATGGCCCGTACGGGTGAAGGCTGCAACCGTATTGTTTTTTTCCAATGAGAGGAGGAATTTGATGACCCAGAGATCATCCCTTTTGTTGGTGGTGCCTTAACAACATCATCATCACTTCGAACAATTTCACAAACTTACTGTTCCCGGTATTGCCTTTAATGCTGAGGTAGAGTATCTTGCTCTAACATTTGGTGTTCATGCCAATGTCAACGTCCAACTCTTTAAGCAACAAGAGCAAGAAGAAGATGAAGATGAAGACGGAGACAAAGATATTAATATTTATGGCACAATATCTGCTGCGTATAATCCTAACACTTATAAAAGCAAGAAGTTGATATTACTATTCCCATAATAGTGAGGTTACGAAATTGCCCCCAGTTTTCTTCCTTCTTTTTTTGTCTTTTACCTTACTGACAGTATATTTACGTAATTACTGTCTCTTATTAGAGGCTGCCGCGTGTCCCTTTCACCTACAACCAAGCTCTCCTCCCTCATCCTCCTTACCCTGCTGCTTTGGGGCCGTTTTTCCCTCTCTAGCTTCCCTGTCCTCCTACCCTGCCACTTACTCTCCCCTCTGCCAGGGCTTACTCAAAGTGAGAATGATGAGTTTCTTTTCATCTCCATCAGTGTTTAAGAATCGTATTTAGGATATATGCAGAGGTTCATCATTGTCGACCTCAACATTAAGACTACGCAAACATCTGTCATCTCTTCAATAATTTGGTTATCTCCGCCTCTACCTCTTCTCTCTACGCTCAATTGTAGATTAATCTAGGATTTTCTTCGTTTAAATGCCGACTCATTTGGTGTATCATTTGCTTAAAATTTGATTAATTTAGGGTTTTCACTTCTCCCAAATTCATTTAGTCTATGTATATATTGCTTGAAATTTGATTAGTTTGGGTTAATGTTATGTTTCATTGATCAATTTTGGTTGGGATTGTGTGTGTTGATGCAGAAGGCTGACATTATTTCGTCCCATGAGTCTACCGACCATGTCGTGTTTTTGTTCTTTCAGTTGCTAAACCGGATATTATTGTTATATTCGCTTAAAATTCGAATAATTTAGATTTTTCTCCTCTCCCAAATTCATATAGTTTATGTATATGTTGCTTTAAGGTTGATTCATTTGGGTTAATGTTATTGTTCATTGATCAATTTTAGTTGGGGTTGTGTATGTTGATATCGTGTTTTTGTTCTTTCAGTTGCTAAACCGAGTATTATTGCTATATATATTTGCTTAAAGTTCGATTAATTCAGGGTTTTATTCTCTCCCAAATCCCAATTCTTTGATACACTATTTGATGAAATTATTTTTGGAATTCGAATTGGTTTGATTTGTGAATTGTTGATTTTATTGTATGTGTCTTGATAATGAGCAGTTTAAGAGAAGATCGATGTACATCACTTTGATTTAA

mRNA sequence

ATGGAAGATGGGATCAGAAACTTCCGAGTTCTGAAGCTCCTCACTCTCACTTTGTCTTCTTTTTCCCTGTTGAATTTGCAAATTGATTCCGGACAACAACCTCACTTCTTCCCTGACCTTAAGATTTTGGTGCGTAATCTTCCATTTAATGTTGACAGTGCTGAGCGCGATGGGTTGTTCGGTGCTGCTGGTACCGTTGAAATGGTTGAGCACGCCGGCGGTACACAAGCAGAGAGTCAATACACCCATCTGAATTTGGTTATGGGACTTGGCAAGGGAAATGAAGGAGAGACGAGTAGAAGCATATGCGTCATAACGTCCACTTCTCGCCAATACTTAAAAGAAACATTAACATGCCCTAAATTCATCATGTCGAAAACCCTCCAAAACAAAAGAAGCCCCAAATTATTTCAATTTCATAATTCTAGGGTTCTACGGTCGAGAAAGAAGGCGAATCATCTGAATTTGTTTAAGAGAAGATCGATGTACATCACTTTGATTTAA

Coding sequence (CDS)

ATGGAAGATGGGATCAGAAACTTCCGAGTTCTGAAGCTCCTCACTCTCACTTTGTCTTCTTTTTCCCTGTTGAATTTGCAAATTGATTCCGGACAACAACCTCACTTCTTCCCTGACCTTAAGATTTTGGTGCGTAATCTTCCATTTAATGTTGACAGTGCTGAGCGCGATGGGTTGTTCGGTGCTGCTGGTACCGTTGAAATGGTTGAGCACGCCGGCGGTACACAAGCAGAGAGTCAATACACCCATCTGAATTTGGTTATGGGACTTGGCAAGGGAAATGAAGGAGAGACGAGTAGAAGCATATGCGTCATAACGTCCACTTCTCGCCAATACTTAAAAGAAACATTAACATGCCCTAAATTCATCATGTCGAAAACCCTCCAAAACAAAAGAAGCCCCAAATTATTTCAATTTCATAATTCTAGGGTTCTACGGTCGAGAAAGAAGGCGAATCATCTGAATTTGTTTAAGAGAAGATCGATGTACATCACTTTGATTTAA

Protein sequence

MEDGIRNFRVLKLLTLTLSSFSLLNLQIDSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVEHAGGTQAESQYTHLNLVMGLGKGNEGETSRSICVITSTSRQYLKETLTCPKFIMSKTLQNKRSPKLFQFHNSRVLRSRKKANHLNLFKRRSMYITLI

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo22550.1	Spo22550.1	mRNA

Homology

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BLAST of Spo22550.1 vs. NCBI nr
Match: gi|902181167|gb|KNA09687.1| (hypothetical protein SOVF_151300 [Spinacia oleracea])

HSP 1 Score: 72.8 bits (177), Expect = 6.400e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1

		  
Query: 29  DSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
           D+G+QP+F PDLKI V NLPFNVDSAE  GLFGAAGTVEMVE
Sbjct: 80  DAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGTVEMVE 121

[Close]

BLAST of Spo22550.1 vs. NCBI nr
Match: gi|1015370|gb|AAA79045.1| (24 kDa RNA binding protein, partial [Spinacia oleracea])

HSP 1 Score: 72.8 bits (177), Expect = 6.400e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1

		  
Query: 29 DSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
          D+G+QP+F PDLKI V NLPFNVDSAE  GLFGAAGTVEMVE
Sbjct: 27 DAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGTVEMVE 68

[Close]

BLAST of Spo22550.1 vs. NCBI nr
Match: gi|731345735|ref|XP_010684074.1| (PREDICTED: ribonucleoprotein At2g37220, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 64.3 bits (155), Expect = 2.300e-7
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1

		  
Query: 32  QQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
           QQP+F PDLK+ V NLPFNVDS++  GLFG+AGTVEMVE
Sbjct: 82  QQPNFSPDLKLFVGNLPFNVDSSDLAGLFGSAGTVEMVE 120

[Close]

BLAST of Spo22550.1 vs. NCBI nr
Match: gi|527188721|gb|EPS60671.1| (hypothetical protein M569_14131, partial [Genlisea aurea])

HSP 1 Score: 60.1 bits (144), Expect = 4.300e-6
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1

		  
Query: 29 DSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
          D G +P F PDLK+ V NLPFNVDSA   GLF  AG VEMVE
Sbjct: 24 DQGDEPRFSPDLKLYVGNLPFNVDSATLAGLFEQAGNVEMVE 65

[Close]

BLAST of Spo22550.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QQY7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_151300 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.500e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1

		  
Query: 29  DSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
           D+G+QP+F PDLKI V NLPFNVDSAE  GLFGAAGTVEMVE
Sbjct: 80  DAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGTVEMVE 121

[Close]

BLAST of Spo22550.1 vs. UniProtKB/TrEMBL
Match: Q41367_SPIOL (24 kDa RNA binding protein (Fragment) OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 4.500e-10
Identity = 34/42 (80.95%), Postives = 37/42 (88.10%), Query Frame = 1

		  
Query: 29 DSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
          D+G+QP+F PDLKI V NLPFNVDSAE  GLFGAAGTVEMVE
Sbjct: 27 DAGRQPNFSPDLKIFVGNLPFNVDSAELAGLFGAAGTVEMVE 68

[Close]

BLAST of Spo22550.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BYC6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g161820 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 1.600e-7
Identity = 29/39 (74.36%), Postives = 34/39 (87.18%), Query Frame = 1

		  
Query: 32  QQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
           QQP+F PDLK+ V NLPFNVDS++  GLFG+AGTVEMVE
Sbjct: 82  QQPNFSPDLKLFVGNLPFNVDSSDLAGLFGSAGTVEMVE 120

[Close]

BLAST of Spo22550.1 vs. UniProtKB/TrEMBL
Match: S8C8F4_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_14131 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 3.000e-6
Identity = 28/42 (66.67%), Postives = 30/42 (71.43%), Query Frame = 1

		  
Query: 29 DSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
          D G +P F PDLK+ V NLPFNVDSA   GLF  AG VEMVE
Sbjct: 24 DQGDEPRFSPDLKLYVGNLPFNVDSATLAGLFEQAGNVEMVE 65

[Close]

BLAST of Spo22550.1 vs. ExPASy Swiss-Prot
Match: ROC2_NICSY (29 kDa ribonucleoprotein B, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.300e-7
Identity = 29/55 (52.73%), Postives = 35/55 (63.64%), Query Frame = 1

		  
Query: 16  LTLSSFSLLNLQIDSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
           + LS F  L   ++  +QP F  DLK+ V NLPF+VDSA   GLF  AG VEMVE
Sbjct: 63  VALSGFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVE 117

[Close]

BLAST of Spo22550.1 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 3.900e-7
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 1

		  
Query: 16  LTLSSFSLLNLQIDSGQQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
           + LS F  L   ++  +QP F  DLK+ V NLPF+VDSA   GLF  AG VE+VE
Sbjct: 64  VALSDFDQLEDDVEVAEQPRFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVE 118

[Close]

BLAST of Spo22550.1 vs. TAIR (Arabidopsis)
Match: AT2G37220.1 (RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 47.8 bits (112), Expect = 7.800e-6
Identity = 23/39 (58.97%), Postives = 28/39 (71.79%), Query Frame = 1

		  
Query: 32  QQPHFFPDLKILVRNLPFNVDSAERDGLFGAAGTVEMVE 71
           ++  F  DLK+ V NLPFNVDSA+   LF +AG VEMVE
Sbjct: 83  KEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVE 121

The following BLAST results are available for this feature:

BLAST of Spo22550.1 vs. NCBI nr
BLAST of Spo22550.1 vs. UniProtKB/TrEMBL
BLAST of Spo22550.1 vs. ExPASy Swiss-Prot
BLAST of Spo22550.1 vs. TAIR (Arabidopsis)

BLAST of Spo22550.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 4

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902181167\|gb\|KNA09687.1\|	6.4e-10	80.9	hypothetical protein SOVF_1513...	[more]
gi\|1015370\|gb\|AAA79045.1\|	6.4e-10	80.9	24 kDa RNA binding protein, pa...	[more]
gi\|731345735\|ref\|XP_010684074.1\|	2.3e-7	74.3	PREDICTED: ribonucleoprotein A...	[more]
gi\|527188721\|gb\|EPS60671.1\|	4.3e-6	66.6	hypothetical protein M569_1413...	[more]

BLAST of Spo22550.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QQY7_SPIOL	4.5e-10	80.9	Uncharacterized protein OS=Spi...	[more]
Q41367_SPIOL	4.5e-10	80.9	24 kDa RNA binding protein (Fr...	[more]
A0A0J8BYC6_BETVU	1.6e-7	74.3	Uncharacterized protein OS=Bet...	[more]
S8C8F4_9LAMI	3.0e-6	66.6	Uncharacterized protein (Fragm...	[more]

BLAST of Spo22550.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2

Position :

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x 1


Match Name	E-value	Identity	Description
ROC2_NICSY	1.3e-7	52.7	29 kDa ribonucleoprotein B, ch...	[more]
ROC2_NICPL	3.9e-7	50.9	31 kDa ribonucleoprotein, chlo...	[more]

BLAST of Spo22550.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT2G37220.1	7.8e-6	58.9	RNA-binding (RRM/RBD/RNP motif...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010167	response to nitrate
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0007584	response to nutrient
biological_process	GO:0009723	response to ethylene
biological_process	GO:0034645	cellular macromolecule biosynthetic process
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0006970	response to osmotic stress
biological_process	GO:0006281	DNA repair
biological_process	GO:0010107	potassium ion import
biological_process	GO:0080178	5-carbamoylmethyl uridine residue modification
biological_process	GO:0048366	leaf development
biological_process	GO:0009987	cellular process
biological_process	GO:0009933	meristem structural organization
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0048316	seed development
biological_process	GO:0080110	sporopollenin biosynthetic process
biological_process	GO:0006400	tRNA modification
biological_process	GO:0019375	galactolipid biosynthetic process
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0042631	cellular response to water deprivation
biological_process	GO:0016036	cellular response to phosphate starvation
biological_process	GO:0009113	purine nucleobase biosynthetic process
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0010118	stomatal movement
biological_process	GO:0019722	calcium-mediated signaling
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0046838	phosphorylated carbohydrate dephosphorylation
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0005983	starch catabolic process
biological_process	GO:0015706	nitrate transport
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009269	response to desiccation
biological_process	GO:0009409	response to cold
biological_process	GO:0009069	serine family amino acid metabolic process
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0006826	iron ion transport
biological_process	GO:0016192	vesicle-mediated transport
biological_process	GO:0010106	cellular response to iron ion starvation
biological_process	GO:0006189	'de novo' IMP biosynthetic process
biological_process	GO:0008152	metabolic process
biological_process	GO:0006529	asparagine biosynthetic process
biological_process	GO:0051090	regulation of DNA-binding transcription factor activity
biological_process	GO:0009738	abscisic acid-activated signaling pathway
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009536	plastid
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005783	endoplasmic reticulum
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005794	Golgi apparatus
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0044464	cell part
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004637	phosphoribosylamine-glycine ligase activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0008233	peptidase activity
molecular_function	GO:0097159	organic cyclic compound binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0005267	potassium channel activity
molecular_function	GO:0005516	calmodulin binding
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:2001070	starch binding
molecular_function	GO:0050308	sugar-phosphatase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004674	protein serine/threonine kinase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016874	ligase activity
molecular_function	GO:0016879	ligase activity, forming carbon-nitrogen bonds
molecular_function	GO:0008568	microtubule-severing ATPase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0035091	phosphatidylinositol binding
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0050662	coenzyme binding
molecular_function	GO:0045552	dihydrokaempferol 4-reductase activity
molecular_function	GO:0017076	purine nucleotide binding
molecular_function	GO:0004519	endonuclease activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo14240	0.75	Barchart \| Table
Spo23856	0.73	Barchart \| Table
Spo09214	0.73	Barchart \| Table
Spo16680	0.72	Barchart \| Table
Spo21422	0.72	Barchart \| Table
Spo02749	0.71	Barchart \| Table
Spo17220	0.71	Barchart \| Table
Spo03163	0.70	Barchart \| Table
Spo18542	0.70	Barchart \| Table
Spo10329	0.70	Barchart \| Table
Spo02065	0.70	Barchart \| Table
Spo09008	0.69	Barchart \| Table
Spo02478	0.69	Barchart \| Table
Spo04985	0.69	Barchart \| Table
Spo07079	0.69	Barchart \| Table
Spo14589	0.68	Barchart \| Table
Spo26995	0.68	Barchart \| Table
Spo04999	0.68	Barchart \| Table
Spo05269	0.68	Barchart \| Table
Spo05444	0.68	Barchart \| Table
Spo02885	0.68	Barchart \| Table
Spo10965	0.68	Barchart \| Table
Spo01822	0.68	Barchart \| Table
Spo04873	0.68	Barchart \| Table
Spo11160	0.67	Barchart \| Table
Spo15297	0.67	Barchart \| Table
Spo04639	0.67	Barchart \| Table
Spo18116	0.67	Barchart \| Table
Spo08541	0.67	Barchart \| Table
Spo15842	0.67	Barchart \| Table
Spo16161	0.66	Barchart \| Table
Spo02230	0.66	Barchart \| Table
Spo03665	0.66	Barchart \| Table
Spo05627	0.66	Barchart \| Table
Spo11482	0.66	Barchart \| Table
Spo14942	0.66	Barchart \| Table
Spo18997	0.66	Barchart \| Table
Spo19936	0.66	Barchart \| Table
Spo20045	0.66	Barchart \| Table
Spo23771	0.66	Barchart \| Table
Spo25013	0.66	Barchart \| Table
Spo26566	0.66	Barchart \| Table
Spo26990	0.66	Barchart \| Table
Spo04885	0.65	Barchart \| Table
Spo03865	0.65	Barchart \| Table
Spo01344	0.65	Barchart \| Table
Spo01841	0.65	Barchart \| Table
Spo27004	0.65	Barchart \| Table
Spo20639	0.65	Barchart \| Table
Spo02340	0.65	Barchart \| Table
Spo21600	0.65	Barchart \| Table
Spo21823	0.65	Barchart \| Table
Spo23402	0.65	Barchart \| Table
Spo11285	0.65	Barchart \| Table
Spo00173	0.65	Barchart \| Table
Spo16218	0.65	Barchart \| Table
Spo09162	0.65	Barchart \| Table
Spo06574	0.65	Barchart \| Table
Spo17225	0.65	Barchart \| Table
Spo17677	0.65	Barchart \| Table