Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCTCGCAGTTATGGAAGATTCTGAAGCTCTTTTCGAATCTAATTCTGGAATTTTAAGTACATTGATGTTAGAATGTAAGTTTATATTTTTATTATTTTCATTTATTTGTTTTTGATTTCAATGTTTTTGGTTTTGATTCTTTTCAATTTTATATTTTGATTTTGGATAAAATGTGTTTAGATTTTTGTTATTTTTCGTGTTTTCGCAGGATATTTCGATTTTGATTTGTATCTTTGTCTTTGTTTTCTGCAGAATTTCTTATTTTTTTTGCAATTGTACGTTAGTTTTTGTTCGATTTTTATTCATAATTTTATTTATTATCAATGTATATAATGTTAATGAATTTTTAGCTCAGATCTTATGAACATTATATATTTTGATAAAATACATATTATGTTATGAAGTTTTGAATTGTTTTGTCCCCAAAAAAAAAATTATTCATTGTTTAGTTATCACATTCTTAACAAATATATTCATGAATATTCAGTTCAAGGAAATTGAACATTGTCTACAATAATAATGAACATTTTATTTAATGACTTTGAATGTTATGTATTTTAGTAATGAACAATGCATTTAAATATATTGTATCTTATTTATTTAGATAATGAACATTCTATTGTATTATATTGAACTTTCTATTAAGAGTTAATCATTACCTATGTTACAATGAACATTTTATTCAAGTATTTTATCATTATTTATTTTTTACAATGAACATTTTATTTAATGATTTTGAATATTACCTATGTTCGTAATGAACATTCTATTTAAGTACATTGAAAAATACCTATTTAAACAATGGACATTCTATTTTAATATTTTTAACATTACTATTTTAATATTGAACATTTTATTTAAGGATATTGAACATTTCAAATGTCAAAATGCTAGTTATTATTGAAATTGATCATTCACTATCTTAACATTGAACAATCACTATTTTAACATTGAACATTCTTCCATTCGCAGTGAATAAGGAAGTAAGTCTTTTTGTTGAAGGGTCAGAATCTATGTTAATGATGAAGGAAGCTAAAAATGAAGATGAAGCTTATGATTTGTATAATGAATATGCTTTTAGTAAAGGTTTTGGTATTAGGGTTGGGAAAGGTCGGAAGCGTCAAAATAGTGAACTTTATACTATGAAACGGTTCTTGTGTAGCTGCGAAGGGGTTAAAGATGAAAAAAGGAAGAGAACAAGGTCTTATGCTAGATTGGATACGCGTACTGGGTGTACTGCTTTTGTTCAGTTTTCTATTGGTAAAGATGGTGTGTGGACGGTTGTGAATCATAATATGATTCATAACCATGCTATGGTTCCTCTAAATAAGAGGCATTTGATAAGATCACAAAGGAAGGTTAGTAAGGAGGCTCTTTACTTTATATCTACTTTAAAAGCTAGTGGTGTTAAAGTGTCTGATACCTTGAGGGTTTTGAGGAAAGAAGTAGGCGGATCACCTATGGTCGATTTTACAGCTAGTGATGCTTATAATGCTTTATCACGTGCAAAAGCTAATAAACTTGAAGGTCATGACTGTCATCAGTTAATCAAGTATTTTACCTAG ATGGAGCTCGCAGTTATGGAAGATTCTGAAGCTCTTTTCGAATCTAATTCTGGAATTTTAAGTACATTGATGTTAGAATTGAATAAGGAAGTAAGTCTTTTTGTTGAAGGGTCAGAATCTATGTTAATGATGAAGGAAGCTAAAAATGAAGATGAAGCTTATGATTTGTATAATGAATATGCTTTTAGTAAAGGTTTTGGTATTAGGGTTGGGAAAGGTCGGAAGCGTCAAAATAGTGAACTTTATACTATGAAACGGTTCTTGTGTAGCTGCGAAGGGGTTAAAGATGAAAAAAGGAAGAGAACAAGGTCTTATGCTAGATTGGATACGCGTACTGGGTGTACTGCTTTTGTTCAGTTTTCTATTGGTAAAGATGGTGTGTGGACGGTTGTGAATCATAATATGATTCATAACCATGCTATGGTTCCTCTAAATAAGAGGCATTTGATAAGATCACAAAGGAAGGTTAGTAAGGAGGCTCTTTACTTTATATCTACTTTAAAAGCTAGTGGTGTTAAAGTGTCTGATACCTTGAGGGTTTTGAGGAAAGAAGTAGGCGGATCACCTATGGTCGATTTTACAGCTAGTGATGCTTATAATGCTTTATCACGTGCAAAAGCTAATAAACTTGAAGGTCATGACTGTCATCAGTTAATCAAGTATTTTACCTAG ATGGAGCTCGCAGTTATGGAAGATTCTGAAGCTCTTTTCGAATCTAATTCTGGAATTTTAAGTACATTGATGTTAGAATTGAATAAGGAAGTAAGTCTTTTTGTTGAAGGGTCAGAATCTATGTTAATGATGAAGGAAGCTAAAAATGAAGATGAAGCTTATGATTTGTATAATGAATATGCTTTTAGTAAAGGTTTTGGTATTAGGGTTGGGAAAGGTCGGAAGCGTCAAAATAGTGAACTTTATACTATGAAACGGTTCTTGTGTAGCTGCGAAGGGGTTAAAGATGAAAAAAGGAAGAGAACAAGGTCTTATGCTAGATTGGATACGCGTACTGGGTGTACTGCTTTTGTTCAGTTTTCTATTGGTAAAGATGGTGTGTGGACGGTTGTGAATCATAATATGATTCATAACCATGCTATGGTTCCTCTAAATAAGAGGCATTTGATAAGATCACAAAGGAAGGTTAGTAAGGAGGCTCTTTACTTTATATCTACTTTAAAAGCTAGTGGTGTTAAAGTGTCTGATACCTTGAGGGTTTTGAGGAAAGAAGTAGGCGGATCACCTATGGTCGATTTTACAGCTAGTGATGCTTATAATGCTTTATCACGTGCAAAAGCTAATAAACTTGAAGGTCATGACTGTCATCAGTTAATCAAGTATTTTACCTAG MELAVMEDSEALFESNSGILSTLMLELNKEVSLFVEGSESMLMMKEAKNEDEAYDLYNEYAFSKGFGIRVGKGRKRQNSELYTMKRFLCSCEGVKDEKRKRTRSYARLDTRTGCTAFVQFSIGKDGVWTVVNHNMIHNHAMVPLNKRHLIRSQRKVSKEALYFISTLKASGVKVSDTLRVLRKEVGGSPMVDFTASDAYNALSRAKANKLEGHDCHQLIKYFT Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22568.1 vs. NCBI nr
Match: gi|731363397|ref|XP_010693411.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 194.5 bits (493), Expect = 2.000e-46 Identity = 100/208 (48.08%), Postives = 140/208 (67.31%), Query Frame = 1
BLAST of Spo22568.1 vs. NCBI nr
Match: gi|731326388|ref|XP_010673996.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 184.1 bits (466), Expect = 2.700e-43 Identity = 98/199 (49.25%), Postives = 134/199 (67.34%), Query Frame = 1
BLAST of Spo22568.1 vs. NCBI nr
Match: gi|731374778|ref|XP_010667064.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 174.1 bits (440), Expect = 2.700e-40 Identity = 93/199 (46.73%), Postives = 133/199 (66.83%), Query Frame = 1
BLAST of Spo22568.1 vs. NCBI nr
Match: gi|731329385|ref|XP_010675567.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 171.0 bits (432), Expect = 2.300e-39 Identity = 95/199 (47.74%), Postives = 130/199 (65.33%), Query Frame = 1
BLAST of Spo22568.1 vs. NCBI nr
Match: gi|731340924|ref|XP_010681654.1| (PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 145.6 bits (366), Expect = 1.000e-31 Identity = 77/187 (41.18%), Postives = 107/187 (57.22%), Query Frame = 1
BLAST of Spo22568.1 vs. UniProtKB/TrEMBL
Match: A0A072UB45_MEDTR (FAR1 DNA-binding domain protein OS=Medicago truncatula GN=MTR_6g051425 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 3.000e-25 Identity = 67/192 (34.90%), Postives = 108/192 (56.25%), Query Frame = 1
BLAST of Spo22568.1 vs. UniProtKB/TrEMBL
Match: C5XWU5_SORBI (Putative uncharacterized protein Sb04g005390 OS=Sorghum bicolor GN=Sb04g005390 PE=4 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 1.600e-23 Identity = 62/174 (35.63%), Postives = 99/174 (56.90%), Query Frame = 1
BLAST of Spo22568.1 vs. UniProtKB/TrEMBL
Match: A0A059D2Y3_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_B01589 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 4.700e-23 Identity = 63/176 (35.80%), Postives = 99/176 (56.25%), Query Frame = 1
BLAST of Spo22568.1 vs. UniProtKB/TrEMBL
Match: A0A059CQZ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C01967 PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 6.200e-23 Identity = 67/176 (38.07%), Postives = 94/176 (53.41%), Query Frame = 1
BLAST of Spo22568.1 vs. UniProtKB/TrEMBL
Match: A0A059C3I9_EUCGR (Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_E01219 PE=4 SV=1) HSP 1 Score: 114.4 bits (285), Expect = 1.800e-22 Identity = 60/174 (34.48%), Postives = 93/174 (53.45%), Query Frame = 1
BLAST of Spo22568.1 vs. ExPASy Swiss-Prot
Match: FRS5_ARATH (Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 1.000e-18 Identity = 56/171 (32.75%), Postives = 83/171 (48.54%), Query Frame = 1
BLAST of Spo22568.1 vs. ExPASy Swiss-Prot
Match: FAR1_ARATH (Protein FAR-RED IMPAIRED RESPONSE 1 OS=Arabidopsis thaliana GN=FAR1 PE=1 SV=1) HSP 1 Score: 57.4 bits (137), Expect = 2.300e-7 Identity = 45/174 (25.86%), Postives = 70/174 (40.23%), Query Frame = 1
BLAST of Spo22568.1 vs. ExPASy Swiss-Prot
Match: FRS12_ARATH (Protein FAR1-RELATED SEQUENCE 12 OS=Arabidopsis thaliana GN=FRS12 PE=2 SV=1) HSP 1 Score: 55.1 bits (131), Expect = 1.200e-6 Identity = 30/96 (31.25%), Postives = 46/96 (47.92%), Query Frame = 1
BLAST of Spo22568.1 vs. ExPASy Swiss-Prot
Match: FRS7_ARATH (Protein FAR1-RELATED SEQUENCE 7 OS=Arabidopsis thaliana GN=FRS7 PE=2 SV=1) HSP 1 Score: 53.9 bits (128), Expect = 2.600e-6 Identity = 30/94 (31.91%), Postives = 44/94 (46.81%), Query Frame = 1
BLAST of Spo22568.1 vs. ExPASy Swiss-Prot
Match: FRS2_ARATH (Protein FAR1-RELATED SEQUENCE 2 OS=Arabidopsis thaliana GN=FRS2 PE=1 SV=1) HSP 1 Score: 52.8 bits (125), Expect = 5.800e-6 Identity = 42/143 (29.37%), Postives = 62/143 (43.36%), Query Frame = 1
BLAST of Spo22568.1 vs. TAIR (Arabidopsis)
Match: AT4G38180.1 (FAR1-related sequence 5) HSP 1 Score: 95.1 bits (235), Expect = 5.700e-20 Identity = 56/171 (32.75%), Postives = 83/171 (48.54%), Query Frame = 1
BLAST of Spo22568.1 vs. TAIR (Arabidopsis)
Match: AT4G15090.1 (FRS (FAR1 Related Sequences) transcription factor family) HSP 1 Score: 57.4 bits (137), Expect = 1.300e-8 Identity = 45/174 (25.86%), Postives = 70/174 (40.23%), Query Frame = 1
BLAST of Spo22568.1 vs. TAIR (Arabidopsis)
Match: AT5G18960.1 (FAR1-related sequence 12) HSP 1 Score: 55.1 bits (131), Expect = 6.600e-8 Identity = 30/96 (31.25%), Postives = 46/96 (47.92%), Query Frame = 1
BLAST of Spo22568.1 vs. TAIR (Arabidopsis)
Match: AT3G06250.1 (FAR1-related sequence 7) HSP 1 Score: 53.9 bits (128), Expect = 1.500e-7 Identity = 30/94 (31.91%), Postives = 44/94 (46.81%), Query Frame = 1
BLAST of Spo22568.1 vs. TAIR (Arabidopsis)
Match: AT2G32250.1 (FAR1-related sequence 2) HSP 1 Score: 52.8 bits (125), Expect = 3.300e-7 Identity = 42/143 (29.37%), Postives = 62/143 (43.36%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22568.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22568.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22568.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22568.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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