Spo22572 (gene)

Overview
NameSpo22572
Typegene
OrganismSpinacia oleracea (Spinach)
Description30S ribosomal protein S2, chloroplastic
LocationSpoScf_04628 : 2515 .. 4136 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCATGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCACAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAGTCAACATAAGGACATTCCTTTGAAAACAAAAAAGCAGAATTTATTCGAGGGAGAAATGGGAGATATTTTGTTTTACCACAGAGAATTATTTGAGTCTTGTCTTTCAAAGAATTAAAGAATTTCTGTAATAGATCAAAACAACAATAATTTTTGGGGTTTATATAGAAGAAATTCATCTTTTTTATCTTTTATGTATTTGTTATGGTTATTTAATTTAGTAATAAAATAAAGAAATTAAATAACCATAACAAATAGAAAGGAATTAATGGTTTTGGTTGTATATCAATGGCCAATCCAAGGTAGAAAAGAAGGTTCCATTGGAACAATTTTTTATTTCAGAATACCTCATCTCTTTAATAATATTAAAAAAAAGAGAACGTGTGGGGAGAAATGACAAGAAGATATTGGAACATCAATTTGGAAGAGATGATGGAAGCGGGAGTTCATTTTGGTCACGGTACTCGGAAATGGAATCCTCGAATGTCGCCTTATATCTCTGCAAAATGTAAAGGGATTCATATTATAAATCTTACTAGAACTGCTCGTTTTTTATCAGAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGCTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGGATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGGGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

mRNA sequence

ATGAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCATGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCACAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGCTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGGATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGGGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

Coding sequence (CDS)

ATGAATCTAGAAAAGAGGATTGATAGTTGGAACGAACGTATAACAAGAATTCTTGGAAGTCCTTGGGGATTCATGATTGGGGCTGAGCTAACTATAGCGCAAAGTCGTATTTCTTTGGTTAACAAGATCCAAAAGGTTTATCGATCACAAGGGGTGCAGATCCACAATAGACATATAGAAATTATTGTACGTCAAATAACATCAAAAGTCTTGGTTTCAGAAGATGGAATGTCTAATGTTTTTTTGCCCGGAGAACTAATTGGATTGTTTCGGGCGGAACGAACGGGACGCGCTTTGGAAGAAGCGATATGTTACCGCGCTACCTTATTGGGAATAACGAGAGCATCTCTGAATACTCAAAGTTTTATCTCCGAAGCGAGTTTTCAAGAAACTGCTCGAGTTTTAGCAAAAGCAGCTCTACGGGGCCGTATTGATTGGTTGAAAGGACTAAAAGAAAACGTTGTTCTGGGGGGGATGATACCTGTTGGTACCGGATTCAAAGGATTCGTACACCATTCAAAGGCTTGTGATTTAGTTTTTGATGCATCAAGTAGAGGAAAACAATTTTTAATTGTTGGGACAAAAAATAAAGCAGCTGATTCAGTAGCACGGGCTGCAATAAGGGCTCGCTGTCATTATGTTAATAAAAAGTGGCTTGGGGGGATGTTAACGAATTGGTCCACGACAGAAACGAGACTTCACAAATTCAGGGACTTGAGAATGGAACAAACGGCAGGGAGACTCGCTCGTCTTCCAAAGAGAGATGCGGCGGTGGTGAAGAGACAATTATCTCACTTGCAAACATATTTGGGGGGGATCAAATATATGACAGGGTTACCGGATATTGTAATCATCGTTGATCAACAGGAAGAATATACGGCCCTTCGAGAATGTATTACTTTGGGAATTCCAACTATTTGTTTAATTGATACAAATTGTAACCCGGATCTCGCAGATATTTCGATTCCGGCAAATGATGACGCTATAGCTTCAATTCGATTAATTCTTACCAAATTAGTATTTGCAATTTGTGAAGGCCGCTCTAGCTATATAAGAAATCCTTGA

Protein sequence

MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIRNP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo22572.1Spo22572.1mRNA


Homology
[Close]
BLAST of Spo22572.1 vs. NCBI nr
Match: gi|223536811|gb|EEF38450.1| (DNA-directed RNA polymerase beta chain, putative [Ricinus communis])

HSP 1 Score: 464.9 bits (1195), Expect = 1.200e-127
Identity = 242/287 (84.32%), Postives = 251/287 (87.46%), Query Frame = 1 

		  

Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVF 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKE VVLGGMIPVGTGFKG V          
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKEKVVLGGMIPVGTGFKGLVQ--------- 264

Query: 181 DASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR 240
             +SR KQFLIVGTKNKAAD VARAAIRARCHYVNKKWLG +LTNWSTTE RL  F+DLR
Sbjct: 265 --ASRRKQFLIVGTKNKAADLVARAAIRARCHYVNKKWLGSILTNWSTTENRLQNFKDLR 324

Query: 241 MEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVD 288
           MEQ   RL RLPK DAA +KRQL+HLQTYLGGIKYMTGLPDIVIIVD
Sbjct: 325 MEQKTCRLNRLPKGDAARLKRQLAHLQTYLGGIKYMTGLPDIVIIVD 360
[Close]
BLAST of Spo22572.1 vs. NCBI nr
Match: gi|223546420|gb|EEF47920.1| (30S ribosomal protein S2, putative [Ricinus communis])

HSP 1 Score: 437.6 bits (1124), Expect = 2.100e-119
Identity = 238/317 (75.08%), Postives = 250/317 (78.86%), Query Frame = 1 

		  

Query: 77  MSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLA 136
           MSNVF PGELIGL RA+RTGRALEEAI YRA LLGI RASLNTQSFISEASFQET RVLA
Sbjct: 1   MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60

Query: 137 KAALRGRIDWLKGLKENVVLGGMIPV---------------------------------G 196
           KAALRGRI+WLKGLKENVVLGGMIP+                                  
Sbjct: 61  KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQEMMKAGVHFGHGTRKWNPRMAPYIS 120

Query: 197 TGFKGF--------VHH-SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYV 256
           T  KG          H  S+ACDLVFDA+SR KQFLIVGTKNKAADSVARAAIRARCHYV
Sbjct: 121 TKRKGIHITNLTRTAHFLSEACDLVFDAASRRKQFLIVGTKNKAADSVARAAIRARCHYV 180

Query: 257 NKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIK 316
           NKKWLGG+LTNWSTTETR+ KFRDLRMEQ  GRL RLPK DAA ++RQL+HLQTYLG IK
Sbjct: 181 NKKWLGGILTNWSTTETRIQKFRDLRMEQKTGRLNRLPKGDAARLERQLAHLQTYLGRIK 240

Query: 317 YMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRL 352
           YM GLPDIVIIVDQQE+YT LRECITLGIPTICLIDTNC+ DLADISIPANDDAIASIRL
Sbjct: 241 YMMGLPDIVIIVDQQEDYTTLRECITLGIPTICLIDTNCDLDLADISIPANDDAIASIRL 300
[Close]
BLAST of Spo22572.1 vs. NCBI nr
Match: gi|223525048|gb|EEF27828.1| (DNA-directed RNA polymerase beta chain, putative [Ricinus communis])

HSP 1 Score: 412.5 bits (1059), Expect = 7.300e-112
Identity = 225/299 (75.25%), Postives = 236/299 (78.93%), Query Frame = 1 

		  

Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELI L +AERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV------------------ 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV                  
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQEMMKAGVHF 264

Query: 181 GTGFKGF--------------VHH----------SKACDLVFDASSRGKQFLIVGTKNKA 240
           G G + +              +H           S+ACDLVFDA+SR KQFLIVGTKNKA
Sbjct: 265 GHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRRKQFLIVGTKNKA 324

Query: 241 ADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAA 258
           ADSVARAAIRARCHYVNKKWLGG+LTNWSTTETRL KFRDLRMEQ  GRL RLPK DAA
Sbjct: 325 ADSVARAAIRARCHYVNKKWLGGILTNWSTTETRLQKFRDLRMEQKTGRLNRLPKGDAA 383
[Close]
BLAST of Spo22572.1 vs. NCBI nr
Match: gi|11497513|ref|NP_054921.1| (ribosomal protein S2 [Spinacia oleracea])

HSP 1 Score: 365.2 bits (936), Expect = 1.300e-97
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236
[Close]
BLAST of Spo22572.1 vs. NCBI nr
Match: gi|188036203|pdb|3BBN|B (Chain B, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome)

HSP 1 Score: 362.1 bits (928), Expect = 1.100e-96
Identity = 180/181 (99.45%), Postives = 181/181 (100.00%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 51  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 110

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 111 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 170

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 171 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 230

Query: 353 N 354
           N
Sbjct: 231 N 231
[Close]
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: B9SD12_RICCO (DNA-directed RNA polymerase beta chain, putative OS=Ricinus communis GN=RCOM_1067230 PE=4 SV=1)

HSP 1 Score: 464.9 bits (1195), Expect = 8.600e-128
Identity = 242/287 (84.32%), Postives = 251/287 (87.46%), Query Frame = 1 

		  

Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGTELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGFVHHSKACDLVF 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKE VVLGGMIPVGTGFKG V          
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKEKVVLGGMIPVGTGFKGLVQ--------- 264

Query: 181 DASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLR 240
             +SR KQFLIVGTKNKAAD VARAAIRARCHYVNKKWLG +LTNWSTTE RL  F+DLR
Sbjct: 265 --ASRRKQFLIVGTKNKAADLVARAAIRARCHYVNKKWLGSILTNWSTTENRLQNFKDLR 324

Query: 241 MEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVD 288
           MEQ   RL RLPK DAA +KRQL+HLQTYLGGIKYMTGLPDIVIIVD
Sbjct: 325 MEQKTCRLNRLPKGDAARLKRQLAHLQTYLGGIKYMTGLPDIVIIVD 360
[Close]
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: B9RL05_RICCO (30S ribosomal protein S2, putative OS=Ricinus communis GN=RCOM_0940830 PE=3 SV=1)

HSP 1 Score: 437.6 bits (1124), Expect = 1.500e-119
Identity = 238/317 (75.08%), Postives = 250/317 (78.86%), Query Frame = 1 

		  

Query: 77  MSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLA 136
           MSNVF PGELIGL RA+RTGRALEEAI YRA LLGI RASLNTQSFISEASFQET RVLA
Sbjct: 1   MSNVFSPGELIGLLRAKRTGRALEEAIYYRAILLGIMRASLNTQSFISEASFQETTRVLA 60

Query: 137 KAALRGRIDWLKGLKENVVLGGMIPV---------------------------------G 196
           KAALRGRI+WLKGLKENVVLGGMIP+                                  
Sbjct: 61  KAALRGRINWLKGLKENVVLGGMIPIGSGFKGLVQEMMKAGVHFGHGTRKWNPRMAPYIS 120

Query: 197 TGFKGF--------VHH-SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYV 256
           T  KG          H  S+ACDLVFDA+SR KQFLIVGTKNKAADSVARAAIRARCHYV
Sbjct: 121 TKRKGIHITNLTRTAHFLSEACDLVFDAASRRKQFLIVGTKNKAADSVARAAIRARCHYV 180

Query: 257 NKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIK 316
           NKKWLGG+LTNWSTTETR+ KFRDLRMEQ  GRL RLPK DAA ++RQL+HLQTYLG IK
Sbjct: 181 NKKWLGGILTNWSTTETRIQKFRDLRMEQKTGRLNRLPKGDAARLERQLAHLQTYLGRIK 240

Query: 317 YMTGLPDIVIIVDQQEEYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRL 352
           YM GLPDIVIIVDQQE+YT LRECITLGIPTICLIDTNC+ DLADISIPANDDAIASIRL
Sbjct: 241 YMMGLPDIVIIVDQQEDYTTLRECITLGIPTICLIDTNCDLDLADISIPANDDAIASIRL 300
[Close]
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: B9T8I6_RICCO (DNA-directed RNA polymerase beta chain, putative OS=Ricinus communis GN=RCOM_0397000 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 5.100e-112
Identity = 225/299 (75.25%), Postives = 236/299 (78.93%), Query Frame = 1 

		  

Query: 1   MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
           +NLEKR+  WNE I RILG PWGF+IG ELTI QSRISLVNKIQ+VYRSQGVQIHNRHIE
Sbjct: 85  INLEKRVGGWNECIPRILGIPWGFLIGIELTIVQSRISLVNKIQRVYRSQGVQIHNRHIE 144

Query: 61  IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
           IIVRQITSKVLVSEDGMSNVF PGELI L +AERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 145 IIVRQITSKVLVSEDGMSNVFSPGELIRLLQAERTGRALEEAICYRAILLGITRASLNTQ 204

Query: 121 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV------------------ 180
           SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPV                  
Sbjct: 205 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGFKGLVQEMMKAGVHF 264

Query: 181 GTGFKGF--------------VHH----------SKACDLVFDASSRGKQFLIVGTKNKA 240
           G G + +              +H           S+ACDLVFDA+SR KQFLIVGTKNKA
Sbjct: 265 GHGTRKWNPRMAPYISAKRKGIHITNLTRTARFLSEACDLVFDAASRRKQFLIVGTKNKA 324

Query: 241 ADSVARAAIRARCHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAA 258
           ADSVARAAIRARCHYVNKKWLGG+LTNWSTTETRL KFRDLRMEQ  GRL RLPK DAA
Sbjct: 325 ADSVARAAIRARCHYVNKKWLGGILTNWSTTETRLQKFRDLRMEQKTGRLNRLPKGDAA 383
[Close]
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: A0A023ZQR1_BETVU (Ribosomal protein S2 OS=Beta vulgaris subsp. vulgaris GN=rps2 PE=3 SV=1)

HSP 1 Score: 359.8 bits (922), Expect = 3.900e-96
Identity = 178/182 (97.80%), Postives = 181/182 (99.45%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQ AGRLARLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQKAGRLARLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236
[Close]
BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Match: A0A165XMG5_9CARY (Ribosomal Protein S2 OS=Bienertia sinuspersici GN=rps2 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 1.100e-95
Identity = 177/182 (97.25%), Postives = 180/182 (98.90%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQ AGRL RLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQKAGRLTRLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236
[Close]
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_SPIOL (30S ribosomal protein S2, chloroplastic OS=Spinacia oleracea GN=rps2 PE=1 SV=1)

HSP 1 Score: 365.2 bits (936), Expect = 8.300e-100
Identity = 181/182 (99.45%), Postives = 182/182 (100.00%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236
[Close]
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_EUCGG (30S ribosomal protein S2, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps2 PE=3 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 1.600e-95
Identity = 173/182 (95.05%), Postives = 178/182 (97.80%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ AGRL RLPKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRTEQKAGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236
[Close]
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_VITVI (30S ribosomal protein S2, chloroplastic OS=Vitis vinifera GN=rps2 PE=3 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 5.200e-94
Identity = 170/182 (93.41%), Postives = 176/182 (96.70%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAI+ARCHYVNKKWLGGM TNWSTTETR
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIKARCHYVNKKWLGGMSTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ  GRL RLPKRDAA++KRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY
Sbjct: 115 LHKFRDLRTEQKTGRLNRLPKRDAAMLKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236
[Close]
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_COFAR (30S ribosomal protein S2, chloroplastic OS=Coffea arabica GN=rps2 PE=3 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 9.900e-93
Identity = 168/182 (92.31%), Postives = 174/182 (95.60%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA SRGKQFLIVGTKNKAADSVA AAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDAGSRGKQFLIVGTKNKAADSVAWAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLRMEQ  GRL RLPKRDAA++KRQLS LQTYLGGIKYMTGLPDIVII+DQ EEY
Sbjct: 115 LHKFRDLRMEQKTGRLNRLPKRDAAMLKRQLSRLQTYLGGIKYMTGLPDIVIIIDQHEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTICLIDTNC+PDLADISIPANDDAI+SIRLIL KLVFAICEGRSSYIR
Sbjct: 175 TALRECITLGIPTICLIDTNCDPDLADISIPANDDAISSIRLILNKLVFAICEGRSSYIR 234

Query: 353 NP 355
           NP
Sbjct: 235 NP 236
[Close]
BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Match: RR2_CARPA (30S ribosomal protein S2, chloroplastic OS=Carica papaya GN=rps2 PE=3 SV=1)

HSP 1 Score: 339.7 bits (870), Expect = 3.800e-92
Identity = 168/181 (92.82%), Postives = 174/181 (96.13%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ  GRL RLPKRDAAV+KRQLSHLQTYLGGIKYMTGLPDIVII+DQQEEY
Sbjct: 115 LHKFRDLRTEQKTGRLNRLPKRDAAVLKRQLSHLQTYLGGIKYMTGLPDIVIIIDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTI LIDTNC+PDLADISIPANDDAIASIRLIL KLVFAICEG SSYI+
Sbjct: 175 TALRECITLGIPTISLIDTNCDPDLADISIPANDDAIASIRLILNKLVFAICEGHSSYIQ 234

Query: 353 N 354
           N
Sbjct: 235 N 235
[Close]
BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match: ATCG00160.1 (ribosomal protein S2)

HSP 1 Score: 323.9 bits (829), Expect = 1.200e-88
Identity = 161/181 (88.95%), Postives = 168/181 (92.82%), Query Frame = 1 

		  

Query: 173 SKACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRARCHYVNKKWLGGMLTNWSTTETR 232
           S+ACDLVFDA+SRGKQFLIVGTKNKAAD V+RAAIRARCHYVNKKWLGGMLTNWSTTE R
Sbjct: 55  SEACDLVFDAASRGKQFLIVGTKNKAADLVSRAAIRARCHYVNKKWLGGMLTNWSTTEKR 114

Query: 233 LHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQEEY 292
           LHKFRDLR EQ      RLPKRDAAV+KRQLS L+TYLGGIKYMTGLPDIVII+DQQEEY
Sbjct: 115 LHKFRDLRTEQKTEGFNRLPKRDAAVLKRQLSRLETYLGGIKYMTGLPDIVIILDQQEEY 174

Query: 293 TALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRSSYIR 352
           TALRECITLGIPTI LIDTNCNPDLADISIPANDDAIASIR IL KLVFAICEGRSSYI+
Sbjct: 175 TALRECITLGIPTISLIDTNCNPDLADISIPANDDAIASIRFILNKLVFAICEGRSSYIQ 234

Query: 353 N 354
           N
Sbjct: 235 N 235
[Close]
BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match: ATCG00170.1 (DNA-directed RNA polymerase family protein)

HSP 1 Score: 306.6 bits (784), Expect = 2.000e-83
Identity = 158/175 (90.29%), Postives = 164/175 (93.71%), Query Frame = 1 

		  

Query: 1    MNLEKRIDSWNERITRILGSPWGFMIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIE 60
            +NLEKRI  WN+ ITRILG PWGF+IGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIE
Sbjct: 1158 LNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIE 1217

Query: 61   IIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQ 120
            IIVRQITSKVLVSE+GMSNVFLPGELIGL RAERTGRALEEAICYRA LLGITRASLNTQ
Sbjct: 1218 IIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQ 1277

Query: 121  SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGMIPVGTGF-KGFVHHSK 175
            SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG+IP GTGF KG VH S+
Sbjct: 1278 SFISEASFQETARVLAKAALRGRIDWLKGLKENVVLGGVIPAGTGFNKGLVHCSR 1332
[Close]
BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Match: AT4G35800.1 (RNA polymerase II large subunit)

HSP 1 Score: 50.1 bits (118), Expect = 3.300e-6
Identity = 25/67 (37.31%), Postives = 38/67 (56.72%), Query Frame = 1 

		  

Query: 101  EAICYRATLLGITRASLNTQSF--ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 160
            + + YR  L+ ITR  +N      +   SF+ET  +L  AA     D L+G+ EN++LG 
Sbjct: 1394 DTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETDCLRGVTENIMLGQ 1453

Query: 161  MIPVGTG 166
            + P+GTG
Sbjct: 1454 LAPIGTG 1460
The following BLAST results are available for this feature:
BLAST of Spo22572.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|223536811|gb|EEF38450.1|1.2e-12784.3DNA-directed RNA polymerase be... [more]
gi|223546420|gb|EEF47920.1|2.1e-11975.030S ribosomal protein S2, puta... [more]
gi|223525048|gb|EEF27828.1|7.3e-11275.2DNA-directed RNA polymerase be... [more]
gi|11497513|ref|NP_054921.1|1.3e-9799.4ribosomal protein S2 [Spinacia... [more]
gi|188036203|pdb|3BBN|B1.1e-9699.4Chain B, Homology Model For Th... [more]
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BLAST of Spo22572.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
B9SD12_RICCO8.6e-12884.3DNA-directed RNA polymerase be... [more]
B9RL05_RICCO1.5e-11975.030S ribosomal protein S2, puta... [more]
B9T8I6_RICCO5.1e-11275.2DNA-directed RNA polymerase be... [more]
A0A023ZQR1_BETVU3.9e-9697.8Ribosomal protein S2 OS=Beta v... [more]
A0A165XMG5_9CARY1.1e-9597.2Ribosomal Protein S2 OS=Biener... [more]
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BLAST of Spo22572.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RR2_SPIOL8.3e-10099.430S ribosomal protein S2, chlo... [more]
RR2_EUCGG1.6e-9595.030S ribosomal protein S2, chlo... [more]
RR2_VITVI5.2e-9493.430S ribosomal protein S2, chlo... [more]
RR2_COFAR9.9e-9392.330S ribosomal protein S2, chlo... [more]
RR2_CARPA3.8e-9292.830S ribosomal protein S2, chlo... [more]
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BLAST of Spo22572.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
ATCG00160.11.2e-8888.9ribosomal protein S2[more]
ATCG00170.12.0e-8390.2DNA-directed RNA polymerase fa... [more]
AT4G35800.13.3e-637.3RNA polymerase II large subuni... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001865Ribosomal protein S2PRINTSPR00395RIBOSOMALS2coord: 318..332
score: 1.2E-23coord: 297..308
score: 1.2E-23coord: 209..226
score: 1.2E-23coord: 280..297
score: 1.2
IPR001865Ribosomal protein S2PFAMPF00318Ribosomal_S2coord: 171..346
score: 1.4
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidHAMAPMF_00291_BRibosomal_S2_Bcoord: 101..347
score: 26
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidPANTHERPTHR1253430S RIBOSOMAL PROTEIN S2 PROKARYOTIC AND ORGANELLARcoord: 174..352
score: 3.2
IPR005706Ribosomal protein S2, bacteria/mitochondria/plastidTIGRFAMsTIGR01011TIGR01011coord: 173..348
score: 2.8
IPR007081RNA polymerase Rpb1, domain 5PFAMPF04998RNA_pol_Rpb1_5coord: 30..118
score: 3.
IPR018130Ribosomal protein S2, conserved sitePROSITEPS00963RIBOSOMAL_S2_2coord: 280..304
scor
IPR023591Ribosomal protein S2, flavodoxin-like domainunknownSSF52313Ribosomal protein S2coord: 170..350
score: 2.75
NoneNo IPR availableGENE3D1.10.287.610coord: 222..274
score: 2.3
NoneNo IPR availableGENE3D3.40.50.10490coord: 173..221
score: 4.6E-50coord: 280..349
score: 4.6
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 32..174
score: 2.53

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0000338 protein deneddylation
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0009902 chloroplast relocation
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0043412 macromolecule modification
biological_process GO:0009987 cellular process
biological_process GO:0065007 biological regulation
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0033044 regulation of chromosome organization
biological_process GO:0007131 reciprocal meiotic recombination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0016579 protein deubiquitination
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0048255 mRNA stabilization
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0043687 post-translational protein modification
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010638 positive regulation of organelle organization
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0009910 negative regulation of flower development
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0016572 histone phosphorylation
biological_process GO:0051567 histone H3-K9 methylation
biological_process GO:0009630 gravitropism
biological_process GO:0016556 mRNA modification
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0031048 chromatin silencing by small RNA
biological_process GO:0015074 DNA integration
biological_process GO:0006508 proteolysis
biological_process GO:0006833 water transport
biological_process GO:0009651 response to salt stress
biological_process GO:0051788 response to misfolded protein
biological_process GO:0009409 response to cold
biological_process GO:0046686 response to cadmium ion
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0006972 hyperosmotic response
biological_process GO:0007030 Golgi organization
biological_process GO:0006096 glycolytic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006810 transport
biological_process GO:0042793 plastid transcription
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006814 sodium ion transport
biological_process GO:0009451 RNA modification
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0045332 phospholipid translocation
biological_process GO:0006812 cation transport
biological_process GO:0015917 aminophospholipid transport
biological_process GO:0050789 regulation of biological process
biological_process GO:0009635 response to herbicide
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0010103 stomatal complex morphogenesis
biological_process GO:0006306 DNA methylation
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0046487 glyoxylate metabolic process
biological_process GO:0015991 ATP hydrolysis coupled proton transport
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0015979 photosynthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0006075 (1->3)-beta-D-glucan biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0010207 photosystem II assembly
biological_process GO:0009769 photosynthesis, light harvesting in photosystem II
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0034968 histone lysine methylation
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0008152 metabolic process
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0006554 lysine catabolic process
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0009579 thylakoid
cellular_component GO:0009523 photosystem II
cellular_component GO:0009536 plastid
cellular_component GO:0009522 photosystem I
cellular_component GO:0010287 plastoglobule
cellular_component GO:0005622 intracellular
cellular_component GO:0000148 1,3-beta-D-glucan synthase complex
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0005840 ribosome
cellular_component GO:0030076 light-harvesting complex
cellular_component GO:0005634 nucleus
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0044444 cytoplasmic part
cellular_component GO:0016020 membrane
cellular_component GO:0031361 integral component of thylakoid membrane
cellular_component GO:0016459 myosin complex
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0019773 proteasome core complex, alpha-subunit complex
cellular_component GO:0005829 cytosol
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
cellular_component GO:0048046 apoplast
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005739 mitochondrion
cellular_component GO:0031410 cytoplasmic vesicle
cellular_component GO:0031966 mitochondrial membrane
cellular_component GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o)
cellular_component GO:0005730 nucleolus
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009506 plasmodesma
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003774 motor activity
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005488 binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0008777 acetylornithine deacetylase activity
molecular_function GO:0004298 threonine-type endopeptidase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0045157 electron transporter, transferring electrons within the noncyclic electron transport pathway of photosynthesis activity
molecular_function GO:0020037 heme binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0030785 [ribulose-bisphosphate carboxylase]-lysine N-methyltransferase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0018024 histone-lysine N-methyltransferase activity
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0032549 ribonucleoside binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0015078 proton transmembrane transporter activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0008080 N-acetyltransferase activity
molecular_function GO:0003843 1,3-beta-D-glucan synthase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0010242 oxygen evolving activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0003779 actin binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0004012 phospholipid-translocating ATPase activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0050136 NADH dehydrogenase (quinone) activity
molecular_function GO:0004222 metalloendopeptidase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo195600.93Barchart | Table
Spo247180.92Barchart | Table
Spo247190.85Barchart | Table
Spo224450.79Barchart | Table
Spo106270.78Barchart | Table
Spo170100.78Barchart | Table
Spo261260.78Barchart | Table
Spo042770.78Barchart | Table
Spo062010.77Barchart | Table
Spo247170.77Barchart | Table
Spo247080.76Barchart | Table
Spo168950.75Barchart | Table
Spo211710.74Barchart | Table
Spo255380.74Barchart | Table
Spo062000.74Barchart | Table
Spo247070.74Barchart | Table
Spo214390.74Barchart | Table
Spo179230.73Barchart | Table
Spo028510.73Barchart | Table
Spo058750.73Barchart | Table
Spo225730.73Barchart | Table
Spo255550.72Barchart | Table
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