Spo22616 (gene)

Overview
NameSpo22616
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSpoScf_01126 : 181868 .. 184467 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAATTTAGAATCCGTGTTTCCACGACGCCGGTCTGCGTCTTACGCATTTGTCGACAAAATATAGCGTCGAGATTTCGTCTGTGCTAGTCACGTGGGTTACTAACCGCCAGTTCAAAGAAATAACCCCCGTAAAAATCTAAACTCCAATACTAATCAACCCTAGCTAGGCGCCCGCCCATTCATCTTCTCTCCCCTCCCTCTCCTCATAGAAATTGCAAATTGCAAAGAATCAATAAATTCTCGTCTCAAATCCATCAATGGGCGAATTCAAATTGGTTTCTCTCTCCTAATACTATGCTGCTTCATCTTCCCCGCTTGCTAATTCGCCGCCACTGAAAAAGAAGCACAAAAGAGGAGCTCATGGAAGAACTGCTACTCAAACCGTCGCTCCGTCGTCAATAATACTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGGTAATTGTATTTATTTATTTTACTTCAATGTTAGATTTTTTTCCTTCAATTTTTCTACGGATCGGGACCCTTTAAGATGAATTTGAGTCCCTTTGTTTTGTTCCTGGTGAATTATAGATCTGGTGTTGTGTTTATGAGTTTCTTCTTTTTTTGTTCTGTTTCAAAAAAATTGGTTTTCTCTCTTCAACTTGTCGAGTATTTCGGGAATTAGGGTTATTGATTTTGTTTCTATTATTTTGGTTTGATTCATGATGATGAGGGACCCTGAACAATCCGCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGTTTGTTGGGTTTTTAATATTTAATTTTTTTGCCATTTTTTCAGCTAATAGCTATTGATAATGCTCATTTTTTTCTTATGAATTTTACTTTGCACTTAAATTAATTAAATGATCCTGGAATTGCAATTGTTGCATAAAATGGTGGGTGTTTGGGGGCAATGTGAATCTTCTTATGTCTTGCTCTATTGATGTGTAAGCGTATGAGTCGGTTTTTGGTTTTTAATACATTATGTTGGATCGTAATGATTGAACCAAAGGGTTCTGATGTTTCTGGACTATAGAATCGGGCAACTTTGATAGTCGGGAGATTCATTCAATTGAAGTCACAGACAATGAAAACATTGTAGTTTATTGTTTTTACTGTTGCCAAGCAGGGTCAGGGGTTAGTAACTCTAGGTTGTTGAATTTTCTCCGTTGTATTCATACATTTCATTGTGAGAAGAGAAACAAACAAAATCAATGTGTAGGAGCACAAAAATTTTAGTCTGCACAGTCTTTATTTATCACTAGTAAACTTTAACTTCGAAATTCAACTACTTTATGATATTGAGCTGCAAATTCATCTATAATGTAATGGCTAGGTTAGTAAATTGGCACTGATTTCATATTGAATGAGGATGACATTGCAGAAATGTGTCTGTTGGTGCCCTGTTTGTGTTTATTTTAGTAGCTAATTTTAGGCCTTATTATCATCAACTATCTAGCACTACTACAAAATGCGTCATTTGAGTTTTTTAATTGATTGTTTTTTACAGTCCAACCCCTTCTTTATTTTCGCAGTATTTGCCGCTTGAACAATTTTATAGTTTCGTTTCACTTTTTGTTATTAGATGCTAAGGGATTTCTTAATTGATAATTTTAGAATAAAAATTCAATTGTTACAAGTCTTTTTCCCCCCTCTTGTATCTGACTGTGGATGCAGCCATGATGCATTTAATATCTTCCGTTGTATCATGTTTGATTGATGATTATATTGAGTAATTGTAAACTGCTATTCTAAGTTGTTGTCACATGTGGTTTGCTGGCCATTTTAGGCACAATGAAAGCTTCAGTAATATTTTCAGTTCTAAATATCAAGCATCAGTTACATCATGAATGACAGAGTATACTGAATAAATTTTATCTATTAGTGCCTGGAAGGATAGAAAACATGCTTGTCTATTCTAAGTCTATGTCTCTATTCCTACCAGTTACATTTCCTGTTTCCTGTTAATTTCCATGTTCCCAATTTTACGAGTTTGGTACTAGAATTATTTTCATTACACTATCTAAGTTGATGATGACTGTTTGAGCATCTGCTGGATTTAGATTAATTTCATATTTCTTGATCAACACTACTACAATTTCCGTAGTTTCTCGACGCTGTACAAATTTGCTGAGGCTGGATTTAATCTAAAAAAATCTTATAGAATCTCATTTACACGAGTGTCCAGTTTAGATTTCAGACTATTACATACGGAATACTAGATTCAGGGCAGTTGAGTATTGAATTACTATTTTATTGTCATTTGCATGATTAGGCGTATAGCGTAAATGTTGCACTGGCTGAATATGTCTTATGTATAGCGTAAAAGTTTGACAAGGCGTAACACTACTTGTGTTTTTCAAGAAATAAATGATTCTTGTTCTTGCCAAGATGTATTTCTTGCATTACTCTTCAAGCTGAAGGCCAACTCTTGTTTTTTTTACAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

mRNA sequence

AAATTTAGAATCCGTGTTTCCACGACGCCGGTCTGCGTCTTACGCATTTGTCGACAAAATATAGCGTCGAGATTTCGTCTGTGCTAGTCACGTGGGTTACTAACCGCCAGTTCAAAGAAATAACCCCCGTAAAAATCTAAACTCCAATACTAATCAACCCTAGCTAGGCGCCCGCCCATTCATCTTCTCTCCCCTCCCTCTCCTCATAGAAATTGCAAATTGCAAAGAATCAATAAATTCTCGTCTCAAATCCATCAATGGGCGAATTCAAATTGGTTTCTCTCTCCTAATACTATGCTGCTTCATCTTCCCCGCTTGCTAATTCGCCGCCACTGAAAAAGAAGCACAAAAGAGGAGCTCATGGAAGAACTGCTACTCAAACCGTCGCTCCGTCGTCAATAATACTGCAGAAATCTACTATTTTTTAAATCTAAATCCAAAATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

Coding sequence (CDS)

ATGAGATTTCTTTGTGTTGACCTTATTCACTCCAGATTCTATTATGAAGTCACACCTGATATCACAGATGCTCCAAAAGACCAAGTACAGGATCAAGGAACTGATGTTGTAGGGGAGGTAGTCGAGGTTGGATCTTCGGCAACAAAGTTCAAAGCTGGTGACAAGGTTCTGACCCTGTTAAGCCATGAT

Protein sequence

MRFLCVDLIHSRFYYEVTPDITDAPKDQVQDQGTDVVGEVVEVGSSATKFKAGDKVLTLLSHD
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo22616.1Spo22616.1mRNA


Homology
[Close]
BLAST of Spo22616.1 vs. NCBI nr
Match: gi|902052257|gb|KNA02862.1| (hypothetical protein SOVF_214630, partial [Spinacia oleracea])

HSP 1 Score: 58.5 bits (140), Expect = 4.700e-6
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHD 64
          DVVGEVVEVGSSATKFKAGDKVLTLLSHD
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHD 29
[Close]
BLAST of Spo22616.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q6X5_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_214630 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 3.300e-6
Identity = 29/29 (100.00%), Postives = 29/29 (100.00%), Query Frame = 1 

		  

Query: 35 DVVGEVVEVGSSATKFKAGDKVLTLLSHD 64
          DVVGEVVEVGSSATKFKAGDKVLTLLSHD
Sbjct: 1  DVVGEVVEVGSSATKFKAGDKVLTLLSHD 29
The following BLAST results are available for this feature:
BLAST of Spo22616.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 1
Match NameE-valueIdentityDescription
gi|902052257|gb|KNA02862.1|4.7e-6100.hypothetical protein SOVF_2146... [more]
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BLAST of Spo22616.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 1
Match NameE-valueIdentityDescription
A0A0K9Q6X5_SPIOL3.3e-6100.Uncharacterized protein (Fragm... [more]
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BLAST of Spo22616.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo22616.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011032GroES-likeGENE3D3.90.180.10coord: 30..60
score: 8.
IPR011032GroES-likeunknownSSF50129GroES-likecoord: 32..62
score: 5.

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0000902 cell morphogenesis
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0061025 membrane fusion
biological_process GO:0003333 amino acid transmembrane transport
biological_process GO:0016049 cell growth
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005773 vacuole
molecular_function GO:0005515 protein binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0015171 amino acid transmembrane transporter activity
molecular_function GO:0019003 GDP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
RNA-Seq Expression