Spo22692 (gene)

Overview
NameSpo22692
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPre-rRNA-processing protein TSR2, putative
Locationchr4 : 53384189 .. 53386183 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTCGCCCGCCTGCTACCTTTCTCAAAGAATCTCAAAGCGTTGGGGGTTTTGCAAGAACTTCAAGTCTTCAATCATCCAAATTCTAGGGTTTATATCCTTTCCTCTCTCCTCTTCTACAATCGGGAGCTCGAGCTCAAGCAATTGATCAACAAATTGAGAATGGAGGAGCCAAAGAAACCGCAGGTATTACCAACGGTGGCAATTCCACACTTCCAAGAAGGCATATCATTGGTGTTCTCAAAATGGTGGGCCCTTCAAATGGCTGTTCAAAACGAGTGGGGAGGCCATGATTCTCATACTAAATCTCTCAATTTCTCCTCTGATATCTTTAATTTCTTCTACAAACCTAATCGCAAAGGTATAAATTCCTTCAATTTTTCGTTTTTTTTGTTAAATTAGTAGAATTTTTTTCTTCAATAATTGAATATTGCGTACTAAGCTTCCGATACTCGTATGCCTATTTTTATTAATTAGTATATGGTTCTTACCTAATTTGGACTTTGCTTGAATTTGTGGTTTAAAATTTGACTGTTGTCATATTGTTGTATTCTGGGTTATTGGGAGGGGTTGCATTTGACTGCTCATTGAATATTTTTTTTTTTTTTGAATTGTTTGTATTTTGGTTGTTTTATTCAGAACCCATATACATAGATGATTTAGAAGAAGAGCTGAACGTAGGCTTGGATTCTTTCAATACAACTGCGGATGACGGCAGCGTCGAGGAGGTTATTGCTTCATTTAGTTTCTCACCTTCTCCAAGTTACATGCTGAATTTCCATGTTGAATTGAATTGAATTGAAATTCTTAAGATCTTGTATCAGAAATAATTCTAATTTAGACTTTTGTATCTGCTTTGTTGTGTATAGGTGGCAGTGCAATTGATGGTTATGTATGAAGAGTGTTTGGAAGGAAACTATCAATCAATTCAGAAGTTGAAGCAAATGAAATCACAGCCTATTCCTCGTGTAGAACAGGTAATTAGCATTTTTCTATCACGTTTTTTCATTTTAATGAGGATTTAGATGACTATGCAACAATTAGGTTATTTGGAGAATTTGGAGCTATGTGCAACACATTGTTATTTGTGATTTTTTACACTCTATATCTGGATTGGGAGCTTGGCATTATATTCTTGGCGTGAAGAATTTATATGAGCAGTGAAGGTCTTAATATGTATTCGAAGTTTGTTGAAGTTCTGATATTTTTTTTAAAATCAAAACAAAACGTGGATCAATAAACTGTCCGGGAATAGTACTAGAGAAGAAGATTTTACCCAGTTATGATACTCCTAGGCCTATTCTTAAGATCTCTCCTCTGGAAAAGTTCTGGATAGCACTCATTGTGAGCTTTTAGTGTATTACGGAGTATGTTTAGAAGCTAGGTGACTATGCTTCTATAGTACGGAGTGTCATCTTGAAAGTAGTTGTTACCCCTGAAATGATCTTGCAAAGTTGTACATGCATTTTGAGAGGATATTTGGTTTACTGATTTAGAGGCATGATCGCAAAATGAATTGCTTGGACTTCTGCTTTTTTCTCCTTAATTGCTGTTCGCTATTGATGTTATACCCCTTCACTGCCTCATTACAGTGGGTAGTGTTCTTGGTGGAGTCAAGGAGTATATGCTATACGGTTTATCACTAGTACTTCACTAATTCCAGCTTCAACCTGTTTGCCCAATAATTGTACTCTGGTTTACGATGTCAATGATCCTTATTTAGGATTTTAGGAACTGTATATATGTTGTTTTGCTTCTGTTGAAGTGCAAATTACTATATTACAGGATGCAAGTGACAGTGACAGTGGTGAGGATGAAAATGACAATAGCATGGGGAATGACGAGGCATCAAATATGATGGTAGATACACCAGAGTCTTTTCTAAGTACAAACTCCACAGAAACACAGAAAAACAACGGCAGACACCAGCAGATGGAAGAAGCTGAAGATGGATGGACTGTAGTTCCTTCAAGAAAGAGCAAGGGTCGGAAAAATTAG

mRNA sequence

TTCGCCCGCCTGCTACCTTTCTCAAAGAATCTCAAAGCGTTGGGGGTTTTGCAAGAACTTCAAGTCTTCAATCATCCAAATTCTAGGGTTTATATCCTTTCCTCTCTCCTCTTCTACAATCGGGAGCTCGAGCTCAAGCAATTGATCAACAAATTGAGAATGGAGGAGCCAAAGAAACCGCAGGTATTACCAACGGTGGCAATTCCACACTTCCAAGAAGGCATATCATTGGTGTTCTCAAAATGGTGGGCCCTTCAAATGGCTGTTCAAAACGAGTGGGGAGGCCATGATTCTCATACTAAATCTCTCAATTTCTCCTCTGATATCTTTAATTTCTTCTACAAACCTAATCGCAAAGAACCCATATACATAGATGATTTAGAAGAAGAGCTGAACGTAGGCTTGGATTCTTTCAATACAACTGCGGATGACGGCAGCGTCGAGGAGGTGGCAGTGCAATTGATGGTTATGTATGAAGAGTGTTTGGAAGGAAACTATCAATCAATTCAGAAGTTGAAGCAAATGAAATCACAGCCTATTCCTCGTGTAGAACAGGATGCAAGTGACAGTGACAGTGGTGAGGATGAAAATGACAATAGCATGGGGAATGACGAGGCATCAAATATGATGGTAGATACACCAGAGTCTTTTCTAAGTACAAACTCCACAGAAACACAGAAAAACAACGGCAGACACCAGCAGATGGAAGAAGCTGAAGATGGATGGACTGTAGTTCCTTCAAGAAAGAGCAAGGGTCGGAAAAATTAG

Coding sequence (CDS)

ATGGAGGAGCCAAAGAAACCGCAGGTATTACCAACGGTGGCAATTCCACACTTCCAAGAAGGCATATCATTGGTGTTCTCAAAATGGTGGGCCCTTCAAATGGCTGTTCAAAACGAGTGGGGAGGCCATGATTCTCATACTAAATCTCTCAATTTCTCCTCTGATATCTTTAATTTCTTCTACAAACCTAATCGCAAAGAACCCATATACATAGATGATTTAGAAGAAGAGCTGAACGTAGGCTTGGATTCTTTCAATACAACTGCGGATGACGGCAGCGTCGAGGAGGTGGCAGTGCAATTGATGGTTATGTATGAAGAGTGTTTGGAAGGAAACTATCAATCAATTCAGAAGTTGAAGCAAATGAAATCACAGCCTATTCCTCGTGTAGAACAGGATGCAAGTGACAGTGACAGTGGTGAGGATGAAAATGACAATAGCATGGGGAATGACGAGGCATCAAATATGATGGTAGATACACCAGAGTCTTTTCTAAGTACAAACTCCACAGAAACACAGAAAAACAACGGCAGACACCAGCAGATGGAAGAAGCTGAAGATGGATGGACTGTAGTTCCTTCAAGAAAGAGCAAGGGTCGGAAAAATTAG

Protein sequence

MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPIPRVEQDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTVVPSRKSKGRKN
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo22692.1Spo22692.1mRNA


Homology
[Close]
BLAST of Spo22692.1 vs. NCBI nr
Match: gi|902112055|gb|KNA03795.1| (hypothetical protein SOVF_205590 [Spinacia oleracea])

HSP 1 Score: 386.3 bits (991), Expect = 3.200e-104
Identity = 193/199 (96.98%), Postives = 196/199 (98.49%), Query Frame = 1 

		  

Query: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           M+EPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF
Sbjct: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120

Query: 121 QMKSQPIPRVEQDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 180
           QMKSQP+ RVEQDASDSD GEDEN+NSMGNDEASNMMVDTPESFLSTNSTETQKNN RHQ
Sbjct: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180

Query: 181 QMEEAEDGWTVVPSRKSKG 200
           QMEEAEDGWTVVPSRKSKG
Sbjct: 181 QMEEAEDGWTVVPSRKSKG 199
[Close]
BLAST of Spo22692.1 vs. NCBI nr
Match: gi|902161410|gb|KNA06574.1| (hypothetical protein SOVF_179760 [Spinacia oleracea])

HSP 1 Score: 327.4 bits (838), Expect = 1.800e-86
Identity = 171/202 (84.65%), Postives = 172/202 (85.15%), Query Frame = 1 

		  

Query: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKS+NFSSDIFNFF
Sbjct: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSVNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM                  
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM------------------ 120

Query: 121 QMKSQPIPRVEQDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 180
                       DASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ
Sbjct: 121 ------------DASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 172

Query: 181 QMEEAEDGWTVVPSRKSKGRKN 203
           QMEEAEDGWTVVPSRKSKGRKN
Sbjct: 181 QMEEAEDGWTVVPSRKSKGRKN 172
[Close]
BLAST of Spo22692.1 vs. NCBI nr
Match: gi|731324480|ref|XP_010672991.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 225.7 bits (574), Expect = 7.200e-56
Identity = 126/201 (62.69%), Postives = 154/201 (76.62%), Query Frame = 1 

		  

Query: 4   PKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKP 63
           P+ P VL   AIP FQEGISLVFS+WW LQMAV+N  GG  S  KSL+FSS +F FF++P
Sbjct: 30  PRFP-VLAAEAIPQFQEGISLVFSQWWGLQMAVENGGGGPHSREKSLDFSSRVFEFFHQP 89

Query: 64  NRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK 123
           +RKEPIYIDDLE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K
Sbjct: 90  DRKEPIYIDDLENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVK 149

Query: 124 --SQPIPRVEQDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQ 183
             S  + R + + SD D  EDE+D S+ ND+ASNMMVD   S  +TN+++T KN+  HQQ
Sbjct: 150 PVSGTLVRKDPNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSKNS-IHQQ 209

Query: 184 MEEAEDGWTVVPSRKSKGRKN 203
           M EAEDGWTVVPSRKSKGRK+
Sbjct: 210 MTEAEDGWTVVPSRKSKGRKH 228
[Close]
BLAST of Spo22692.1 vs. NCBI nr
Match: gi|590642915|ref|XP_007030654.1| (Pre-rRNA-processing protein TSR2, putative [Theobroma cacao])

HSP 1 Score: 181.0 bits (458), Expect = 2.000e-42
Identity = 96/189 (50.79%), Postives = 121/189 (64.02%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           FQEGI L+ S+WWAL  AV+NEWGG DS  K+    SD+ +FF    R EP+YIDDLE  
Sbjct: 14  FQEGIGLILSRWWALTAAVENEWGGRDSRGKANMLYSDVISFFTNTKRAEPLYIDDLENI 73

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPI----PRVEQD 137
           L  GL S NT  DDGS+EEVA +LM+M+EECLEGNYQS++KL+     P+    P  E+D
Sbjct: 74  LREGLHSLNTDVDDGSIEEVAEKLMIMHEECLEGNYQSVEKLRTTNPPPVAHVRPSTEED 133

Query: 138 ASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTVVP 197
             + D  +D+ D+SM  D  +NMMVD P S  S N      +     Q  EA DGW VV 
Sbjct: 134 --EDDDNDDDEDDSMDADNTTNMMVDVPNSHSSLNPVSMPTDEPGPNQAAEAADGWVVVS 193

Query: 198 SRKSKGRKN 203
           SR++KGR+N
Sbjct: 194 SRRNKGRRN 200
[Close]
BLAST of Spo22692.1 vs. NCBI nr
Match: gi|870864015|gb|KMT15148.1| (hypothetical protein BVRB_3g062620 isoform B [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 181.0 bits (458), Expect = 2.000e-42
Identity = 109/191 (57.07%), Postives = 131/191 (68.59%), Query Frame = 1 

		  

Query: 14  AIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDD 73
           AIP FQEGISLVFS+WW LQMAV+N  GG                        EPIYIDD
Sbjct: 20  AIPQFQEGISLVFSQWWGLQMAVEN--GG------------------------EPIYIDD 79

Query: 74  LEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK--SQPIPRVE 133
           LE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K  S  + R +
Sbjct: 80  LENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVKPVSGTLVRKD 139

Query: 134 QDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTV 193
            + SD D  EDE+D S+ ND+ASNMMVD   S  +TN+++T KN+  HQQM EAEDGWTV
Sbjct: 140 PNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSKNS-IHQQMTEAEDGWTV 183

Query: 194 VPSRKSKGRKN 203
           VPSRKSKGRK+
Sbjct: 200 VPSRKSKGRKH 183
[Close]
BLAST of Spo22692.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q941_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_205590 PE=4 SV=1)

HSP 1 Score: 386.3 bits (991), Expect = 2.200e-104
Identity = 193/199 (96.98%), Postives = 196/199 (98.49%), Query Frame = 1 

		  

Query: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           M+EPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF
Sbjct: 1   MDEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120

Query: 121 QMKSQPIPRVEQDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 180
           QMKSQP+ RVEQDASDSD GEDEN+NSMGNDEASNMMVDTPESFLSTNSTETQKNN RHQ
Sbjct: 121 QMKSQPVLRVEQDASDSDEGEDENENSMGNDEASNMMVDTPESFLSTNSTETQKNNSRHQ 180

Query: 181 QMEEAEDGWTVVPSRKSKG 200
           QMEEAEDGWTVVPSRKSKG
Sbjct: 181 QMEEAEDGWTVVPSRKSKG 199
[Close]
BLAST of Spo22692.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGY0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_179760 PE=4 SV=1)

HSP 1 Score: 327.4 bits (838), Expect = 1.200e-86
Identity = 171/202 (84.65%), Postives = 172/202 (85.15%), Query Frame = 1 

		  

Query: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFF 60
           MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKS+NFSSDIFNFF
Sbjct: 1   MEEPKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSVNFSSDIFNFF 60

Query: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLK 120
           YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM                  
Sbjct: 61  YKPNRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLM------------------ 120

Query: 121 QMKSQPIPRVEQDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 180
                       DASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ
Sbjct: 121 ------------DASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQ 172

Query: 181 QMEEAEDGWTVVPSRKSKGRKN 203
           QMEEAEDGWTVVPSRKSKGRKN
Sbjct: 181 QMEEAEDGWTVVPSRKSKGRKN 172
[Close]
BLAST of Spo22692.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CNP9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062620 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 5.000e-56
Identity = 126/201 (62.69%), Postives = 154/201 (76.62%), Query Frame = 1 

		  

Query: 4   PKKPQVLPTVAIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKP 63
           P+ P VL   AIP FQEGISLVFS+WW LQMAV+N  GG  S  KSL+FSS +F FF++P
Sbjct: 30  PRFP-VLAAEAIPQFQEGISLVFSQWWGLQMAVENGGGGPHSREKSLDFSSRVFEFFHQP 89

Query: 64  NRKEPIYIDDLEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK 123
           +RKEPIYIDDLE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K
Sbjct: 90  DRKEPIYIDDLENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVK 149

Query: 124 --SQPIPRVEQDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQ 183
             S  + R + + SD D  EDE+D S+ ND+ASNMMVD   S  +TN+++T KN+  HQQ
Sbjct: 150 PVSGTLVRKDPNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSKNS-IHQQ 209

Query: 184 MEEAEDGWTVVPSRKSKGRKN 203
           M EAEDGWTVVPSRKSKGRK+
Sbjct: 210 MTEAEDGWTVVPSRKSKGRKH 228
[Close]
BLAST of Spo22692.1 vs. UniProtKB/TrEMBL
Match: A0A061F2C1_THECC (Pre-rRNA-processing protein TSR2, putative OS=Theobroma cacao GN=TCM_026420 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.400e-42
Identity = 96/189 (50.79%), Postives = 121/189 (64.02%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           FQEGI L+ S+WWAL  AV+NEWGG DS  K+    SD+ +FF    R EP+YIDDLE  
Sbjct: 14  FQEGIGLILSRWWALTAAVENEWGGRDSRGKANMLYSDVISFFTNTKRAEPLYIDDLENI 73

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPI----PRVEQD 137
           L  GL S NT  DDGS+EEVA +LM+M+EECLEGNYQS++KL+     P+    P  E+D
Sbjct: 74  LREGLHSLNTDVDDGSIEEVAEKLMIMHEECLEGNYQSVEKLRTTNPPPVAHVRPSTEED 133

Query: 138 ASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTVVP 197
             + D  +D+ D+SM  D  +NMMVD P S  S N      +     Q  EA DGW VV 
Sbjct: 134 --EDDDNDDDEDDSMDADNTTNMMVDVPNSHSSLNPVSMPTDEPGPNQAAEAADGWVVVS 193

Query: 198 SRKSKGRKN 203
           SR++KGR+N
Sbjct: 194 SRRNKGRRN 200
[Close]
BLAST of Spo22692.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT80_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062620 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 1.400e-42
Identity = 109/191 (57.07%), Postives = 131/191 (68.59%), Query Frame = 1 

		  

Query: 14  AIPHFQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDD 73
           AIP FQEGISLVFS+WW LQMAV+N  GG                        EPIYIDD
Sbjct: 20  AIPQFQEGISLVFSQWWGLQMAVEN--GG------------------------EPIYIDD 79

Query: 74  LEEELNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMK--SQPIPRVE 133
           LE  L  G+D+F+T   DGS+EEVA  LM+M+EECL G+YQSIQKLKQ+K  S  + R +
Sbjct: 80  LENLLVEGMDAFHTDVYDGSIEEVAEHLMIMHEECLGGDYQSIQKLKQVKPVSGTLVRKD 139

Query: 134 QDASDSDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTV 193
            + SD D  EDE+D S+ ND+ASNMMVD   S  +TN+++T KN+  HQQM EAEDGWTV
Sbjct: 140 PNDSDDDDEEDEDDESIENDKASNMMVDLSGSLPNTNASQTSKNS-IHQQMTEAEDGWTV 183

Query: 194 VPSRKSKGRKN 203
           VPSRKSKGRK+
Sbjct: 200 VPSRKSKGRKH 183
[Close]
BLAST of Spo22692.1 vs. ExPASy Swiss-Prot
Match: TSR2_YEAST (Pre-rRNA-processing protein TSR2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TSR2 PE=1 SV=2)

HSP 1 Score: 63.5 bits (153), Expect = 3.000e-9
Identity = 47/175 (26.86%), Postives = 83/175 (47.43%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F+ G+S+V  KW AL +AV+N WGG DS  K    +  + + F      +   I+  E  
Sbjct: 32  FELGVSMVIYKWDALDVAVENSWGGPDSAEKRDWITGIVVDLFKNEKVVDAALIE--ETL 91

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKL--------KQMKSQPIPR 137
           L   +D F T  +D S   +AV+++ +Y +C   NY  ++KL        +  KS+ +  
Sbjct: 92  LYAMIDEFETNVEDDSALPIAVEVINIYNDCFNLNYNKVEKLYLEWQEKQRTKKSKRVVH 151

Query: 138 VEQDASDSDSGEDENDNSMGNDEASNMMVD----TPESFLSTNSTETQKNNGRHQ 181
           +E D  + D   ++ D+   ++E   ++ D     PE  +  +  E  +  GR +
Sbjct: 152 IEGDDDEDDEDVEDYDDEDEDEEMDEVVPDLVSSKPEPIVDEDGFELVQPKGRRK 204
[Close]
BLAST of Spo22692.1 vs. ExPASy Swiss-Prot
Match: TSR2_DANRE (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 5.600e-8
Identity = 50/180 (27.78%), Postives = 88/180 (48.89%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F E +  V   W  LQ+AV N +GG  S  K+      +  +F      +P  ++D   E
Sbjct: 12  FSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFTDNGDLQPDEVEDFISE 71

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSI-QKLKQMKSQPIPRVEQDASD 137
           L    + F+T  DDGS+ +VA Q+  M+++C +G    + +++ ++  +        A+ 
Sbjct: 72  LMN--NEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSSGRAKATP 131

Query: 138 SDSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTVVPSRK 197
           + + +D++D    +DE   M  +   +  S +ST     N  H + EE +DGWTVV  +K
Sbjct: 132 AQTPQDDDD----DDEEEAMDCEGGSAGASVSSTAV---NDLHHE-EEEDDGWTVVRRKK 181
[Close]
BLAST of Spo22692.1 vs. ExPASy Swiss-Prot
Match: TSR2_XENLA (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis GN=tsr2 PE=2 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.100e-7
Identity = 48/179 (26.82%), Postives = 81/179 (45.25%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F+E    V   W  LQ+AV+N +GG  S  K+      I  +F      E   ++D    
Sbjct: 12  FREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVED--SI 71

Query: 78  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPIPRVEQDASDS 137
           + +  D F+T  +DGS   VA QL V++ +C +G   ++Q      +Q    V     + 
Sbjct: 72  MGMMNDEFDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDVRAKVQEV 131

Query: 138 DSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTVVPSRK 197
              +DE ++S   +EA +       S  ++ S     ++   ++ E  +DGWTVV  +K
Sbjct: 132 TPSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSAPKKEEEPEDDGWTVVRRKK 188
[Close]
BLAST of Spo22692.1 vs. ExPASy Swiss-Prot
Match: TSR2_HUMAN (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 6.800e-6
Identity = 47/185 (25.41%), Postives = 91/185 (49.19%), Query Frame = 1 

		  

Query: 18  FQEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEE 77
           F+ G+      W ALQ+AV+N +GG  S  K+      + ++F    R   + +D++E+ 
Sbjct: 12  FRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFM---RNADLELDEVEDF 71

Query: 78  LNVGL-DSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPIPRVEQDASD 137
           L   L + F+T  +DGS+ +V+ QL  M+     G+  +++++    +Q   +V   A  
Sbjct: 72  LGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTATALK 131

Query: 138 SDSGEDENDNSMGNDEASNMMVDTPESFLSTNST--ETQKNNGRHQQMEE---AEDGWTV 197
           +    DE+++ +  D    M V       +T+    + + ++   Q ++E    EDGWT+
Sbjct: 132 TARETDEDEDDV--DSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIVEDGWTI 191
[Close]
BLAST of Spo22692.1 vs. TAIR (Arabidopsis)
Match: AT5G27990.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 116.3 bits (290), Expect = 2.200e-26
Identity = 71/185 (38.38%), Postives = 109/185 (58.92%), Query Frame = 1 

		  

Query: 19  QEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIY-IDDLEEE 78
           +EGI L+  +W A++ AV+N WGG DS  K+    + +F+FF +   K+P+  I+ L + 
Sbjct: 16  KEGIGLILWRWTAMRAAVENGWGGRDSQAKANETVATVFDFFIQS--KDPVKDIEKLGDL 75

Query: 79  LNVGLDSFNTTADDGSVEEVAVQLMVMYEECLEGNYQSIQKLKQMKSQPIPRVEQDASDS 138
           L+ GLD  NTTA+DGSV+EVA  L+ +YE+C  GNY+ +++L+   SQ    V +     
Sbjct: 76  LDKGLDELNTTAEDGSVDEVANLLVDLYEDCCNGNYEMLEELRATYSQTSASVVK----V 135

Query: 139 DSGEDENDNSMGNDEASNMMVDTPESFLSTNSTETQKNNGRHQQMEEAEDGWTVVPSRKS 198
            +G+DE  +   +D+ ++MMVD             QK          A+DGWTVV SRK+
Sbjct: 136 SNGDDEESDDEDDDQTTDMMVD----------ASNQKQEAMPVDEPVADDGWTVVSSRKN 184

Query: 199 KGRKN 203
           KG++N
Sbjct: 196 KGKRN 184
[Close]
BLAST of Spo22692.1 vs. TAIR (Arabidopsis)
Match: AT3G22510.1 (Pre-rRNA-processing protein TSR2, conserved region)

HSP 1 Score: 78.2 bits (191), Expect = 6.500e-15
Identity = 42/94 (44.68%), Postives = 61/94 (64.89%), Query Frame = 1 

		  

Query: 19  QEGISLVFSKWWALQMAVQNEWGGHDSHTKSLNFSSDIFNFFYKPNRKEPIYIDDLEEEL 78
           Q  I  + S+W  LQMAV+N+WGGHDS  KS   + ++F+   + N    I ++++E  L
Sbjct: 32  QRDIGELLSRWGGLQMAVKNQWGGHDSLKKSQELAHNLFHLISQSN---VITVEEIENLL 91

Query: 79  NVG-LDSFNTTADDGSVEEVAVQLMVMYEECLEG 112
           +   L SFNT  +DGS+EEVA QLM+++EE L G
Sbjct: 92  HESLLLSFNTEIEDGSIEEVAEQLMILHEEHLRG 122
The following BLAST results are available for this feature:
BLAST of Spo22692.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902112055|gb|KNA03795.1|3.2e-10496.9hypothetical protein SOVF_2055... [more]
gi|902161410|gb|KNA06574.1|1.8e-8684.6hypothetical protein SOVF_1797... [more]
gi|731324480|ref|XP_010672991.1|7.2e-5662.6PREDICTED: pre-rRNA-processing... [more]
gi|590642915|ref|XP_007030654.1|2.0e-4250.7Pre-rRNA-processing protein TS... [more]
gi|870864015|gb|KMT15148.1|2.0e-4257.0hypothetical protein BVRB_3g06... [more]
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BLAST of Spo22692.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9Q941_SPIOL2.2e-10496.9Uncharacterized protein OS=Spi... [more]
A0A0K9QGY0_SPIOL1.2e-8684.6Uncharacterized protein OS=Spi... [more]
A0A0J8CNP9_BETVU5.0e-5662.6Uncharacterized protein OS=Bet... [more]
A0A061F2C1_THECC1.4e-4250.7Pre-rRNA-processing protein TS... [more]
A0A0J8CT80_BETVU1.4e-4257.0Uncharacterized protein OS=Bet... [more]
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BLAST of Spo22692.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TSR2_YEAST3.0e-926.8Pre-rRNA-processing protein TS... [more]
TSR2_DANRE5.6e-827.7Pre-rRNA-processing protein TS... [more]
TSR2_XENLA2.1e-726.8Pre-rRNA-processing protein TS... [more]
TSR2_HUMAN6.8e-625.4Pre-rRNA-processing protein TS... [more]
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BLAST of Spo22692.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G27990.12.2e-2638.3Pre-rRNA-processing protein TS... [more]
AT3G22510.16.5e-1544.6Pre-rRNA-processing protein TS... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR019398Pre-rRNA-processing protein TSR2PFAMPF10273WGGcoord: 18..98
score: 3.4
NoneNo IPR availablePANTHERPTHR21250UNCHARACTERIZEDcoord: 15..199
score: 1.6
NoneNo IPR availablePANTHERPTHR21250:SF1SUBFAMILY NOT NAMEDcoord: 15..199
score: 1.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006400 tRNA modification
biological_process GO:0006833 water transport
biological_process GO:0019932 second-messenger-mediated signaling
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0046686 response to cadmium ion
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0019307 mannose biosynthetic process
biological_process GO:0019853 L-ascorbic acid biosynthetic process
biological_process GO:0006972 hyperosmotic response
biological_process GO:0007030 Golgi organization
biological_process GO:0009298 GDP-mannose biosynthetic process
biological_process GO:0006000 fructose metabolic process
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0008618 7-methylguanosine metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0006470 protein dephosphorylation
biological_process GO:0001510 RNA methylation
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0051604 protein maturation
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006099 tricarboxylic acid cycle
biological_process GO:0006566 threonine metabolic process
biological_process GO:0046685 response to arsenic-containing substance
biological_process GO:0006563 L-serine metabolic process
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0006544 glycine metabolic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0034660 ncRNA metabolic process
biological_process GO:0050787 detoxification of mercury ion
biological_process GO:0032875 regulation of DNA endoreduplication
biological_process GO:0006560 proline metabolic process
biological_process GO:0006420 arginyl-tRNA aminoacylation
biological_process GO:0006525 arginine metabolic process
biological_process GO:0032482 Rab protein signal transduction
biological_process GO:0006623 protein targeting to vacuole
biological_process GO:0061025 membrane fusion
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0000902 cell morphogenesis
biological_process GO:0016049 cell growth
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0051510 regulation of unidimensional cell growth
biological_process GO:0051302 regulation of cell division
biological_process GO:0016310 phosphorylation
biological_process GO:0016567 protein ubiquitination
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0000278 mitotic cell cycle
biological_process GO:0009561 megagametogenesis
biological_process GO:0007276 gamete generation
biological_process GO:0007267 cell-cell signaling
biological_process GO:0019430 removal of superoxide radicals
biological_process GO:0006449 regulation of translational termination
biological_process GO:0043488 regulation of mRNA stability
biological_process GO:0051083 'de novo' cotranslational protein folding
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0009657 plastid organization
biological_process GO:0006094 gluconeogenesis
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019748 secondary metabolic process
biological_process GO:0006364 rRNA processing
biological_process GO:0000304 response to singlet oxygen
biological_process GO:0009416 response to light stimulus
biological_process GO:0019216 regulation of lipid metabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0006655 phosphatidylglycerol biosynthetic process
biological_process GO:0006086 acetyl-CoA biosynthetic process from pyruvate
biological_process GO:0006733 oxidoreduction coenzyme metabolic process
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0009106 lipoate metabolic process
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0009695 jasmonic acid biosynthetic process
biological_process GO:0006546 glycine catabolic process
biological_process GO:0006766 vitamin metabolic process
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0009108 coenzyme biosynthetic process
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0030154 cell differentiation
biological_process GO:0016117 carotenoid biosynthetic process
biological_process GO:0009073 aromatic amino acid family biosynthetic process
biological_process GO:0031047 gene silencing by RNA
biological_process GO:0071702 organic substance transport
biological_process GO:0033036 macromolecule localization
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0008152 metabolic process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006636 unsaturated fatty acid biosynthetic process
biological_process GO:0031408 oxylipin biosynthetic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0006412 translation
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0030206 chondroitin sulfate biosynthetic process
biological_process GO:0042254 ribosome biogenesis
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005730 nucleolus
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0015030 Cajal body
cellular_component GO:0005634 nucleus
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0016020 membrane
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0042644 chloroplast nucleoid
cellular_component GO:0005622 intracellular
cellular_component GO:0018444 translation release factor complex
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005819 spindle
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0009507 chloroplast
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0009295 nucleoid
cellular_component GO:0016607 nuclear speck
cellular_component GO:0031965 nuclear membrane
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0005835 fatty acid synthase complex
cellular_component GO:0005773 vacuole
cellular_component GO:0000139 Golgi membrane
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003924 GTPase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0019003 GDP binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0016874 ligase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004721 phosphoprotein phosphatase activity
molecular_function GO:0004615 phosphomannomutase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004316 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity
molecular_function GO:0051287 NAD binding
molecular_function GO:0016301 kinase activity
molecular_function GO:0003747 translation release factor activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0045340 mercury ion binding
molecular_function GO:0004784 superoxide dismutase activity
molecular_function GO:0016152 mercury (II) reductase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0004148 dihydrolipoyl dehydrogenase activity
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0019905 syntaxin binding
molecular_function GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity
molecular_function GO:0004814 arginine-tRNA ligase activity
RNA-Seq Expression