Spo22872 (gene) | SpinachBase

Overview


Name	Spo22872
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Unknown protein
Location	chr3 : 13083541 .. 13086940 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATAATAAGAGGGGTAATATAGTAAAAGTGTGAGCTTTTGATGGAGGTGGTGTGGTGTGCGTGGGGTGAGGGGGAGTGAGAATGTGGATTAGCATAATGTTTTCAAGTTCCCATAAGGTAGGGAATCAACTCTTATGAAATCTTTCTATAATTAAATTAATGTCATTTTGTAATGACCCTAGTATAATGCAAAATGCAACGCGTGTGTTATATACAGCTATACTTAAAGGTCAGTGGCAACAATAATTCATATCAAAGACCATCAATCCATAATGTCAACTTAGAGCTGATCAACATAGGACCGACCCGACCCGAATTTTAAAAATTTCAACGGGTTTTGGACAATGTAAAATCACACTTTTAGTTATAAATTTGGCTCAACCTGAAATGGCCCGAAAATCCCGTTATTTTTGGCCCAAAATAGCGGGTTTTAGGCACACAAAATCGGCCTGAAGCTTGGCCCTACCCGACCCGATATAATGGACAAGTTTTTAAGGCCTCGACCCGACCCAAATCCGACCCAACTTTTGATTAGTTCTAGCTCACCTGTCTTATCACCTTGAAACATCAAAATATTTGGAATCAAAGGGGCACAGGGAATTAATTGTCTCGATCTCATCAATCAACACGTATTTTTGGATTTTTTTTTTGGAGCTTTCCCCCCTTTTCCGCTCGGCCCCTTGGTAAAACAATAAAGCTACTCTAGAAAGCAATAACACACAAAAAACTAAACTAAACACAAGAATGAAGGTAGAGAAGAAGAGAAATCATACCTATGTACACACGAAGAATGCACACCCCCCAAGCTAAATCAGACAAATATCAATTCATCAAAAGTATCAAGCTAAATCAGAACGTAGGAGTATGTTGTTTTTTTTTTGACAGACACTAGGAGTATGTTGTTGAATTAGTCTTAATGACATTTTTTCAAAGGAAAAATTGATACTGAAAGTCCCAACTATGGTCACTTCATTTTAAAAGGTCCCAACTTTTGGTTATCCTAGAGTGGTCCCAACTTCGAGGTGCGTTTTCCCAAAATGATATATCCTTTAGCTTAGTAAACTGTTAATTAAGTTGATTTAAACATATAACACTATTCCATTAACTTCATTTAATTAAAATATAAGATTATTGCAATTTGCAAGAGAATTATGAGTCTTAATTAAGTTATATATCACTTAATATTAACTAAGGGACCATTTTTGGAAAGGACTCGCTATAGTTGGGACCGTTTTGAGATAATCAAAAGTTGAGACCTTTTAAAGTAAATTGACCATAGTTGGGACCGTTAATATTGATTTTTTTCTTTTTCAAATATCAATTTTTGTAAGTTTTATAGTAATATTTAATTGCGTATAATTACGATCAAATTAGTGTCAGTCAAATTATTGCAATTGTTCAAGAATAGAGAGAATACTCAATTTCAATGAAGCCTGTGAATTAAAGCAATGTATACATTGACAAACAAAGGAAAGAGCCGTTTCGAGTTAATCCCATTAATTGGGAATTTTTTCCAATCAAATGGCATTTTCGTAAATAATTGATGTTTTATAACGAAAATTCCGTTAAATGTGGGCTAATTTCAGCCACATGGCATCAAATATGTCATAAATGTATTTTCATAATACATCAACAACTATGTAATATACAGTTAACAATTAACATTATAAAATAAGCTTCTACTAATAAACAATCTACAACTATAAATCTACAGTCAATCACTAACCATTAAATAATATTGCATTTTAGTAATTCATTAGTAGTCATAAAATATACAGTCATCAACGAGTAATATACAATCAACGCCAAGTAATATATAGTAAATAATTACAAATATACAGTCAACACCTAACATTATACCACTTACCGTTTTCAAGCAAAATATTTACAAAAATGCAATTTAATTGGAAATTTTTTTCAATCACTTATATTAACTCGGAATTTCTCCAAAGAAAATGACTAAAATGTGTATTGTGTAGAGTTTGTTTTACTAGTCGAGTCAAGCCAACCCAAATTGAAATTTGACGGAGGCGAGTTCAAGTTAGGCGAGTTCAAGTTTGAGTTGCTCGTAAACTTTTCAACTCGATCAGCACGGCAGCACCCAATTCCCAAGTCCCAGCGAAATTCCCGGCTAATATTACACCACGTATGCAACAACGTTCACATGAAATCCCACTAAAAACCGTTTTTGTCAATTTGTCATTCCTCCAAACCCGGGAAAATATCGACGTGGTGTGTCAATTACACTATTTTCAGTTTTGCGTCACCACTTCACTCGGCCTTACTCTCAGCGCCACCGTCTCCGACTCCACAAATTGTTGGTGCGCCGCCGTTCCCTCGCTATCTAGTGGATCACCTCTGTCCATTTTCCTCTTCTCCTCCTTCGGTTTGTTCCTCCTATGCCCTAATCCCTTCATTTCATCACTTCGTAGATTATCATAATTCGATTGGATTGTTTTGATTTCTGCTTAATCAATTTAGAAACTTTGTTGTGTTTTGACAGGAAAATAAAATTTGCGTCATGCTTTCAATTATTATACATATGCCAATTATTTTTGAAATGAAGATTAGAATGCAGATTCGTGAGGGACTTTGCCTGAAAACCTTGAATATATGTGTGTATTGATGCTTATTTGTGAGTGATCATACATTATCGTAATTAATTGTGTCTTGTGATGAATATATTATATACTGATGTTATTTGCTTATTTTAATACCTATTGGTTGATCGTGTATGAAATTGAGTAGGATGAGTTGTTTTGAATTCTATTTGGGAGTTAGACCTAGTCCGTGATCGTGCCCCAGAATCGTTTCTTTGGTCGATTTTGTTACTTAGCTCATAAGGGGTGAGATTGATCTCAAATTCTCAATGAAGGATTATTTGTCTGCTATTTATTGAGCTGACTGTTACTCCGTATAACTTTTGTCAGTCTCTCTCTTAATGCTATTGGTTTGTTTGAATTTTTCGTAGATGCATTAATTCTAGGATCAATGGATCATTAAATACATATGAGTCTTGATTACTGCTATGTGTTGTGTCAACAGTGTGTGCTACGATTGAAGAATCAAGTGTGTTTGTGATGATTTTTTTGAGGAACACTTAACGGGGAGATATTTCTAGTATAAAGAATTGTCTGCAGATGGTTTATGTTGTATAATAAAGAGTTTATATATTTGTAATTAGCTTAAATACTTTCTTGCGTTATTTGGTATTGTGATTGAGTTGTACATTTGTGTCATCCGTTGTTTTTCGTTGCATTGTATTTATTTCATGGAGATAGATATGTGAATATGTCCATATGGGTGGCAAACTGGCAATGCCTTGTGTTATATTGGATTTATTGCTGGATTTGTTTAGAGGTCTTTATATGATTATCAAGTTGGGGATGTTGTGTAA

mRNA sequence

ATGGATAATAAGAGGGGTAATATAGTAAAAGTTTTTGCGTCACCACTTCACTCGGCCTTACTCTCAGCGCCACCGTCTCCGACTCCACAAATTGTTGGTGCGCCGCCGTTCCCTCGCTATCTAGTGGATCACCTCTGTCCATTTTCCTCTTCTCCTCCTTCGAGGTCTTTATATGATTATCAAGTTGGGGATGTTGTGTAA

Coding sequence (CDS)

ATGGATAATAAGAGGGGTAATATAGTAAAAGTTTTTGCGTCACCACTTCACTCGGCCTTACTCTCAGCGCCACCGTCTCCGACTCCACAAATTGTTGGTGCGCCGCCGTTCCCTCGCTATCTAGTGGATCACCTCTGTCCATTTTCCTCTTCTCCTCCTTCGAGGTCTTTATATGATTATCAAGTTGGGGATGTTGTGTAA

Protein sequence

MDNKRGNIVKVFASPLHSALLSAPPSPTPQIVGAPPFPRYLVDHLCPFSSSPPSRSLYDYQVGDVV

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo22872.1	Spo22872.1	mRNA

Homology

The following BLAST results are available for this feature:

BLAST of Spo22872.1 vs. NCBI nr
BLAST of Spo22872.1 vs. UniProtKB/TrEMBL
BLAST of Spo22872.1 vs. ExPASy Swiss-Prot
BLAST of Spo22872.1 vs. TAIR (Arabidopsis)

BLAST of Spo22872.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo22872.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo22872.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo22872.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
molecular_function	GO:0016758	transferase activity, transferring hexosyl groups

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo11056	0.67	Barchart \| Table
Spo16205	0.66	Barchart \| Table