Spo22878 (gene)

Overview
NameSpo22878
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionMitochondrial ribosomal protein L51/S25/CI-B8 family protein
Locationchr3 : 13306760 .. 13311583 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACGTACGAAATGATTTATTCTTTTCCCGATTCGTATTAGTAACTTTAGGTTAAGTTCGTGTTGCGTTGTGGTAGCCAATGTTGTGTATTGTCGTGGATTGCCAGCTCTAACTTGACATGGCATGCTAGTTTGCGCCCTTAAGTCCCTTAACTACTCTTTGCCAAACATTGTGATTTGTGAGGGGTTTTACTCGAATAGATTAAAAACCCTAATTCCCAAAACTCGCTATTGCTTTTCAGAATCTAAACGAAATTTCTGCAGAAATCACAAAGTTCATTTGAAATAATTTCCCAAAATGTCGCTCAGGGGAGTTTGGCAGCTTCAGAAACTGATTGTTAGCTACTGCGATTGGGGAGGCAGCAGCAGAGGCATCAGGTATTATTTCTCACTAATTTCTCCTGTACTCAAATTTCTTCTTTTGGTTAATTTTTCTTCAATAAACGCATAGTTCTGCAATTCTTTTTTTCGATTTTTCATTTGCGCCCATATGCAGATTCTGATGCAATTGTATAATTGTTATTGCATTTGCCTGAAATTGTCAAATTGGTATCGTTTTTTGTTTGATCTTTTCATGGTTTAGTTTATTGGCCATTTTTTGATGTATTGATTTCGGAATTTGCTTCGATTATCTCAAAGTTGAGTGCTTTTTCGATATGGTTGGGATGAACTATGATGGTAATTGAAGCTTAAAACTTCATTTTTTTGTGAAACCAGAAATAAATCATATACTAGTGTTGGAGGCCTTATTTTGACATTTTATTCAGTTTGAGGAGCTATGTTGATTGGACTCGGGTAAAGGATTGGTTGGAGATAAGCATTTGGGGATTGTAAGTGGCTTTGTCCAGTTAGTTTCGTTGGAAGTGCATATGTATCGTAATGTTTACAAATTCCCTAGGGTTCATTTTGAGGAGGGATGTTACAAGAACTCGAGTTAAGGATTTTGGTAGGGATGTGGATTTGAGGATCATAGGGGGTCTTTTGATGGGGTTCTGTACTTCTATTGTATGTGGGTGCCCCAGGGTGGTGCTTTGCTTGGAATAGAGTAGCTCGGTACATTATATTTAGACCTTGTGATCATGTCCAATAATGTCAAAATAAAGGAATCCTATTTTTTAAGTTGTAGCATAGTACTGTCTTGGAGGGTTGCTGTCACTGTATCCTTAGTTTTAAAAAGCGTGCTTTTTTGCGCTTCAAGCTCGGAAGCTCGGAAGCTCACAACAAAAGCTTCTGCCAGTTGAAACCCAGCGACATACAAGAAGCGCGCGCATCCTAGCGCTTCGTTGCTTCTGCGCTTCCTAGCGCCTTTGCGCTTCTTGTAGTCTGGGCACATGAGACCCTTATTTTTTATAAAAAATAAAGCCACGTGACTCTAATCTTCATTTTTAAAGTATCACGTGATTTCTTTTTCTAAAAAAGCGAATATTTGGGAAGTTTTTGAAAACCCTAGTGCAATTTTCTCCCGTAGCCGGATTTCTCTAGCCTTCTCGCCGGATTTCTCCCATCGGATTCTGAATTTTTCTTTCATCGTTTTTATTTCTCTTTTTTTCTTTCACCTTTCTTTCCATATTTTCTGAACTTTTGAAATTTTATTATTTCTTTTTGGGTGCGCTTCGCCTATGAAAAGCGTGCGCTTTCGCTTTGCGCTTAAGCTCCAGGGCCCTTTTGCGCTTCAGTGCGCTTCGCGCTTTTTAAAACTAAGACTGTATCTGGTGATTGTGTTTCTTTGGGCTGTTGTCAACTTATTTAGTTTATTGGTTTGTGACAATTCTGATGAGTACAAGCTGATTTTCTTTTGAAATGTCGTTATAGGTGTTTCTCTTTACTATTTCCATTTTATACTTTCCCTATCAACTTTCCGTTATTTAGTTTATTGGTTTGTGACGACTCTGATGAGTACAACCCTTATGATCCTCCATGTAAAGAGCCATTGTTTCATTGATTGTATAGCTACCCCTATGGTAGCTTCTAGCAACTTCACTCAGATGCTAAGGGGCTCATTCCGAAAATATTCTAGCCAAACTTTGTTGATTTAAGAATTTGAGGTAACAAGTCTGCAAAACCAAAAGTCTGTGAGGAATGGGGACAGCCTGCACAATAGCATTGTCAGCATCCAACTTGCTTCACCGCTTATACTCATTTTTTCATCTTGGTGTAAAGCTAGAAGGCCTGGAACCCTGTCCTTTGCTAAATATCTGGCCAGAAAAGATATAAATGGATGAGAACCAAAGCATGGCTCTAGTTGGTATCCAACTAGGTTCCTGTGCACAATTATTTTACGCATTCTCTCTCCTCTCTTCCAACTTTGATGGTTGCAATAAAACCACTCTTGAAGAGGTGAACTATTGAACCTATCACTTTAAAGGAGTGCATGCATGAGAATTATCGAGAACATTAGAGGTATTGATACTAGTGTGGGATACTGTAGGTACTTTATAATTAGCCTCCATGTGCTGAGTGCTGACTATAAATATTCACTTGGAAGCTTATGAAAAGATGATTTATCGCATTGCAGGGCATTCATGGAAACACATTTGCCATCAATTCAGGAGAGCAACCCACGGGTAGAGGTCGTTACAGAACTCATTCGTGGACAGCATCCTCATCTAAAGGCTTTCTACCGTGAGTGCCTCCCTCTGTGCTTTTTGCCTCTTCAGCATCCTTTTCATTTGAATAAATCTGAAGAAAATTTAGGGTTTGAGAATGACACGTAATTTCTGGTGCCACTCTTTACTGATTCACATTCCACCATATGACTAATGCAATATTTTCTGATTTATATTTTGAGTGTCTTGCTTTTGTCTTCTTTTTTTCATTTTATAGCAAGCAAAAATATTTTTTCCCCTCCACGTTAAGGAAAATAGTTAGATTTCAGATTTTGATCCTTGTGGATTGACAACCAAGCTAAGGCTAATCCAATTCTTGGGAACATGGGACCTAAATCTTGACAGACAGGCTGTCTTTCAAATTGAAAGCTTTTACTGATATTGCGTTTGGTTGATGTCTTGACTGGCACTCTTCATGAACCTATTGCTTGAAGAGAAGTTATCAAGCAGAAAGGGGTGTCATAAAGATAAAATCCTGTTCTAGGACAACAGAAAAAAGGCCTTTCTAGGTTCTTGGCTATATTTTATTCCTTGTTATTGAAGGTTTGCAAGAGAGATTATTTCTTGGCAGCAGTTATTTTTTTATGTATTGTTATAATATGTATATCTGGTTTAGTTCTAGTTGAGGGCTTCCAAGCTGGAACTCATCGGAGCTGTGTGGAATTATGTTTCTTATCAAGTTATCAGTATGTGCGCGTTGTTCTTTGCTGGACTTCCTGAAAGTACTGAGTTATGCAATTGATAGAGGGGTTTGTGAATTAACAACTTGTTTAGTTATGTATTTATTAGGAGCCTAGGAGGGAAGGGGAGGTGGAGTTGTGGAAAGGTGAGGGGAGATAAACTGTTCTATTGTTTGGATAAGATAGAAATGGAGGGAAGGGAGGACTGGAGGAGTAGGGGAAGCAAAACTATAATTTCAATGACAAGTGCCATCAATTCATTCATTTTCAATACTCCAGAAACATAGGCCAAAACTCAAACATGAGAGAAGGCTGGAGTGGTAGAATATAATTTGAAAAAAAACGCGAGGGGACAAGTGAGGAAAATGACTATAGAAGGATTTCAGTTAAGAGAGAGAAAATGACCGTAGGAATTCCAGAGAAGAGAGAGTGAAGGGAGAAGAGAATTGGCAGTCGGTGGATCTGACGCAGAAGGGTGACACGAGGAAAAACATGGTATTAGCAAGGGTAGAGTCGTCTCTTCTGTGTTATTAAGTTTTGTGGTTGTCATTCTCCTTTCAAATCTTTCCAATTTTGGAGACATTGTTTCTTAGAGAGTCGAAGGACAAAATTCCTTCCATCTCCCTCCTCTCCATTTCCTCACTCCCTTGATATACTATCCAAACAATAGAAAATGTACCCTTCCCTTTCCTTTTTCCCTCCAAATCCCCCCATCCAAACAAGGTGTGATTGTGTGAAAGAAGGATAGAGGAGCAGAGAAATGGCAGAGGGAATGTAGGGTTGCTTGCTTATAGAGAATTGGGATTATAGAGCATTTTGGATCTATTTGATTTGTTTTCATCATCTCACTCACAGTCATAGTTCTAGATCATCTGCTAAAGTATGTACGTACATTTAGATGTGAACACTCTGGCGTTGCATAATTTTATATCTGATTGTTTAATAGGAAACAAGAACGAACGAGTGGTTTGTGTGAAGAACATGACTCAAGAAGACGTACTGCTGCATGCAACAAGGTTGAGGAATGCTTTGGGGAGGAAGGTGATTAAATTGAAGACAAGACATGTCACAAAGCACCCTAGTGTACAAGGCACCTGGACAACTGCTCTGAAACTATAAAGCAGTGAAAGCCCTTCGTGGTTAGTAATCTTGCCGGCAATTACGTGAAGCGTATGGTGTCCTTTTTACGCCCTTGTTAGTCTCTTGTTGGATGTAGCTTACTGTTTCGGATGGTGTTGCTAGACCTTACTGTTTGTGATCTTCCCGTTGGTTGCTGAGATAACTAGGATTGATAAATGTTACCCTGGTTTTATTATGACCACATTATTCTAGCTTCTTACCTCCTTTTTTGTATTGTATTGAGTAGTGGGTAGCATGTGCTACAATGCTAGTACTCATCAATTAGAACTTGGCTTACAAGATCTGAATAAATTTATAAAGTTTGTTTGAGCCAGATGAACAAATGCTGTTTGTGTAGACTATTCTTATTTTCTAGGTAAGTTCAAATTCAATTATGAAGTACTTCCTTCGTTTTCTTTGA

mRNA sequence

AACGTACGAAATGATTTATTCTTTTCCCGATTCGTATTAGTAACTTTAGGTTAAGTTCGTGTTGCGTTGTGGTAGCCAATGTTGTGTATTGTCGTGGATTGCCAGCTCTAACTTGACATGGCATGCTAGTTTGCGCCCTTAAGTCCCTTAACTACTCTTTGCCAAACATTGTGATTTGTGAGGGGTTTTACTCGAATAGATTAAAAACCCTAATTCCCAAAACTCGCTATTGCTTTTCAGAATCTAAACGAAATTTCTGCAGAAATCACAAAGTTCATTTGAAATAATTTCCCAAAATGTCGCTCAGGGGAGTTTGGCAGCTTCAGAAACTGATTGTTAGCTACTGCGATTGGGGAGGCAGCAGCAGAGGCATCAGGGCATTCATGGAAACACATTTGCCATCAATTCAGGAGAGCAACCCACGGGTAGAGGTCGTTACAGAACTCATTCGTGGACAGCATCCTCATCTAAAGGCTTTCTACCGAAACAAGAACGAACGAGTGGTTTGTGTGAAGAACATGACTCAAGAAGACGTACTGCTGCATGCAACAAGGTTGAGGAATGCTTTGGGGAGGAAGGTGATTAAATTGAAGACAAGACATGTCACAAAGCACCCTAGTGTACAAGGCACCTGGACAACTGCTCTGAAACTATAAAGCAGTGAAAGCCCTTCGTGGTTAGTAATCTTGCCGGCAATTACGTGAAGCGTATGGTGTCCTTTTTACGCCCTTGTTAGTCTCTTGTTGGATGTAGCTTACTGTTTCGGATGGTGTTGCTAGACCTTACTGTTTGTGATCTTCCCGTTGGTTGCTGAGATAACTAGGATTGATAAATGTTACCCTGGTTTTATTATGACCACATTATTCTAGCTTCTTACCTCCTTTTTTGTATTGTATTGAGTAGTGGGTAGCATGTGCTACAATGCTAGTACTCATCAATTAGAACTTGGCTTACAAGATCTGAATAAATTTATAAAGTTTGTTTGAGCCAGATGAACAAATGCTGTTTGTGTAGACTATTCTTATTTTCTAGGTAAGTTCAAATTCAATTATGAAGTACTTCCTTCGTTTTCTTTGA

Coding sequence (CDS)

ATGTCGCTCAGGGGAGTTTGGCAGCTTCAGAAACTGATTGTTAGCTACTGCGATTGGGGAGGCAGCAGCAGAGGCATCAGGGCATTCATGGAAACACATTTGCCATCAATTCAGGAGAGCAACCCACGGGTAGAGGTCGTTACAGAACTCATTCGTGGACAGCATCCTCATCTAAAGGCTTTCTACCGAAACAAGAACGAACGAGTGGTTTGTGTGAAGAACATGACTCAAGAAGACGTACTGCTGCATGCAACAAGGTTGAGGAATGCTTTGGGGAGGAAGGTGATTAAATTGAAGACAAGACATGTCACAAAGCACCCTAGTGTACAAGGCACCTGGACAACTGCTCTGAAACTATAA

Protein sequence

MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKAFYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo22878.1Spo22878.1mRNA


Homology
[Close]
BLAST of Spo22878.1 vs. NCBI nr
Match: gi|902160057|gb|KNA06384.1| (hypothetical protein SOVF_180990 [Spinacia oleracea])

HSP 1 Score: 244.2 bits (622), Expect = 1.200e-61
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELI GQHPHLKA
Sbjct: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELILGQHPHLKA 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 120
           FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL
Sbjct: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 119
[Close]
BLAST of Spo22878.1 vs. NCBI nr
Match: gi|731323394|ref|XP_010672408.1| (PREDICTED: 54S ribosomal protein L51, mitochondrial [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 223.8 bits (569), Expect = 1.600e-55
Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           MSLRG WQLQKLIVSYCDWGGSSRGIR FM+THLPS+QE N ++EVV +LIRGQHPHLK 
Sbjct: 1   MSLRGAWQLQKLIVSYCDWGGSSRGIREFMKTHLPSLQERNSQLEVVPDLIRGQHPHLKG 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 120
           FYRNKNERV+CVKN+T ED+LLHATRLRNALGRKV+KLKTRHVTKHPSVQGTWTTALKL
Sbjct: 61  FYRNKNERVICVKNLTPEDILLHATRLRNALGRKVVKLKTRHVTKHPSVQGTWTTALKL 119
[Close]
BLAST of Spo22878.1 vs. NCBI nr
Match: gi|672118381|ref|XP_008782398.1| (PREDICTED: 54S ribosomal protein L51, mitochondrial [Phoenix dactylifera])

HSP 1 Score: 222.6 bits (566), Expect = 3.600e-55
Identity = 100/118 (84.75%), Postives = 114/118 (96.61%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           M+LRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLP+++E+NP++EVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPTLKENNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALK 119
            Y+N N+RV+CVKNMT ED+LLHATRLRNALGRKV+KL+TRHVTKHPSVQGTWTTA+K
Sbjct: 61  LYKNHNQRVICVKNMTPEDILLHATRLRNALGRKVVKLRTRHVTKHPSVQGTWTTAVK 118
[Close]
BLAST of Spo22878.1 vs. NCBI nr
Match: gi|225434098|ref|XP_002276080.1| (PREDICTED: 54S ribosomal protein L51, mitochondrial [Vitis vinifera])

HSP 1 Score: 221.9 bits (564), Expect = 6.100e-55
Identity = 102/119 (85.71%), Postives = 114/119 (95.80%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           M+LRGVWQLQKLIVSY DWGGSSRGIRAFME+HLP+ +ESNP++EVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYSDWGGSSRGIRAFMESHLPAFKESNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 120
           FY+NKNERV+CVKNMT EDVL HATRLRNALGRKV+KLKTRHVTKHPSVQGTWTTA+++
Sbjct: 61  FYKNKNERVICVKNMTPEDVLHHATRLRNALGRKVLKLKTRHVTKHPSVQGTWTTAMRI 119
[Close]
BLAST of Spo22878.1 vs. NCBI nr
Match: gi|629098878|gb|KCW64643.1| (hypothetical protein EUGRSUZ_G02225 [Eucalyptus grandis])

HSP 1 Score: 220.3 bits (560), Expect = 1.800e-54
Identity = 99/118 (83.90%), Postives = 114/118 (96.61%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           M+LRGVWQLQKLIVSYC+WGGSSRG+RAFME+HLP+ +E NP++EV TELIRGQHPHLKA
Sbjct: 76  MALRGVWQLQKLIVSYCNWGGSSRGMRAFMESHLPAFKEVNPQLEVATELIRGQHPHLKA 135

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALK 119
           FY+NKN+RV+CVKNM+ ED+LLHATRLRNALGRKV+KLKTRHVTKHPSVQGTWTTA+K
Sbjct: 136 FYKNKNQRVICVKNMSPEDILLHATRLRNALGRKVVKLKTRHVTKHPSVQGTWTTAVK 193
[Close]
BLAST of Spo22878.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGG2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_180990 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 8.000e-62
Identity = 118/119 (99.16%), Postives = 118/119 (99.16%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELI GQHPHLKA
Sbjct: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELILGQHPHLKA 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 120
           FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL
Sbjct: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 119
[Close]
BLAST of Spo22878.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FHV9_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g058450 PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.100e-55
Identity = 103/119 (86.55%), Postives = 112/119 (94.12%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           MSLRG WQLQKLIVSYCDWGGSSRGIR FM+THLPS+QE N ++EVV +LIRGQHPHLK 
Sbjct: 1   MSLRGAWQLQKLIVSYCDWGGSSRGIREFMKTHLPSLQERNSQLEVVPDLIRGQHPHLKG 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 120
           FYRNKNERV+CVKN+T ED+LLHATRLRNALGRKV+KLKTRHVTKHPSVQGTWTTALKL
Sbjct: 61  FYRNKNERVICVKNLTPEDILLHATRLRNALGRKVVKLKTRHVTKHPSVQGTWTTALKL 119
[Close]
BLAST of Spo22878.1 vs. UniProtKB/TrEMBL
Match: A5C6I0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0094g00450 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 4.300e-55
Identity = 102/119 (85.71%), Postives = 114/119 (95.80%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           M+LRGVWQLQKLIVSY DWGGSSRGIRAFME+HLP+ +ESNP++EVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYSDWGGSSRGIRAFMESHLPAFKESNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALKL 120
           FY+NKNERV+CVKNMT EDVL HATRLRNALGRKV+KLKTRHVTKHPSVQGTWTTA+++
Sbjct: 61  FYKNKNERVICVKNMTPEDVLHHATRLRNALGRKVLKLKTRHVTKHPSVQGTWTTAMRI 119
[Close]
BLAST of Spo22878.1 vs. UniProtKB/TrEMBL
Match: A0A059BEV2_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_G02225 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.200e-54
Identity = 99/118 (83.90%), Postives = 114/118 (96.61%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           M+LRGVWQLQKLIVSYC+WGGSSRG+RAFME+HLP+ +E NP++EV TELIRGQHPHLKA
Sbjct: 76  MALRGVWQLQKLIVSYCNWGGSSRGMRAFMESHLPAFKEVNPQLEVATELIRGQHPHLKA 135

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALK 119
           FY+NKN+RV+CVKNM+ ED+LLHATRLRNALGRKV+KLKTRHVTKHPSVQGTWTTA+K
Sbjct: 136 FYKNKNQRVICVKNMSPEDILLHATRLRNALGRKVVKLKTRHVTKHPSVQGTWTTAVK 193
[Close]
BLAST of Spo22878.1 vs. UniProtKB/TrEMBL
Match: A0A061EJZ0_THECC (Mitochondrial ribosomal protein L51/S25/CI-B8 family protein OS=Theobroma cacao GN=TCM_019878 PE=4 SV=1)

HSP 1 Score: 219.9 bits (559), Expect = 1.600e-54
Identity = 100/118 (84.75%), Postives = 112/118 (94.92%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           M+LRGVWQLQKLIVSYCDWGGSSRGIRAFME+ LP+ +E NP++EVVTELIRGQHPHLK 
Sbjct: 1   MALRGVWQLQKLIVSYCDWGGSSRGIRAFMESQLPTFKEKNPQLEVVTELIRGQHPHLKG 60

Query: 61  FYRNKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWTTALK 119
           FY+NKNERV+CVKNMT ED+LLHA+RLRNALGRKV+KLKTRHVTKHPSVQGTWTT +K
Sbjct: 61  FYKNKNERVICVKNMTPEDILLHASRLRNALGRKVVKLKTRHVTKHPSVQGTWTTDVK 118
[Close]
BLAST of Spo22878.1 vs. ExPASy Swiss-Prot
Match: RM51_SCHPO (54S ribosomal protein L51, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl51 PE=3 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.000e-13
Identity = 34/105 (32.38%), Postives = 62/105 (59.05%), Query Frame = 1 

		  

Query: 10  QKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKAFYRNKNERV 69
           +++  SYC+WGGSS+G++ F+ T L S+ + +  VE      +G+HP ++A+Y    E+V
Sbjct: 24  RRIEFSYCNWGGSSKGMKEFLSTKLESLAKESQDVEFHVTNRQGKHPLIRAYYNTGREKV 83

Query: 70  VCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWT 115
           +C + M+   +   A   R++ G K   +K    + +PSV+G W+
Sbjct: 84  ICTRKMSASSIFQKAILCRDSDGLKPRLIKYPVESTNPSVRGIWS 128
[Close]
BLAST of Spo22878.1 vs. ExPASy Swiss-Prot
Match: RM51_ASHGO (54S ribosomal protein L51, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MRPL51 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.100e-9
Identity = 36/117 (30.77%), Postives = 62/117 (52.99%), Query Frame = 1 

		  

Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMET-HLPSIQESNPRVEVVTELIRGQHPHLKAFYRN 65
           ++  +K+ + YC+WGGSS+G+R F+ +  L    E  P+++    + +  HP LKA Y N
Sbjct: 20  IFPCKKITLQYCNWGGSSQGLRDFLTSKRLAKWAEKYPQIQFEV-VAKAGHPVLKAEYIN 79

Query: 66  KNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTK-------HPSVQGTWT 115
              + +CV+N+  + V L    LR + G ++     RH  K       + SV+G W+
Sbjct: 80  GLNKAICVRNLNVDHVELKLKLLRESSGAQL-----RHYPKNANVLSLNQSVRGVWS 130
[Close]
BLAST of Spo22878.1 vs. ExPASy Swiss-Prot
Match: RM51_YEAST (54S ribosomal protein L51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL51 PE=1 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 1.600e-7
Identity = 32/113 (28.32%), Postives = 66/113 (58.41%), Query Frame = 1 

		  

Query: 6   VWQLQKLIVSYCDWGGSSRGIRAFMET-HLPSIQESNPRVEVVTELIRGQHPHLKAFYRN 65
           V+  +K+ + +C+WGGSS G+R F+ +  L    +  P ++    + +  HP L+A Y N
Sbjct: 20  VFPCRKITLQFCNWGGSSEGMRKFLTSKRLDKWGQEFPWIQFEV-MRKSGHPLLRAEYTN 79

Query: 66  KNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRH---VTKHPSVQGTWT 115
             E+V+CV+N+  ++V      L+++ G  +++ +T++    + + SV+G W+
Sbjct: 80  GREKVICVRNLNIDNVENKLKLLKDSDG-DILRRRTKNDNVESLNSSVRGIWS 130
[Close]
BLAST of Spo22878.1 vs. ExPASy Swiss-Prot
Match: RM43_MOUSE (39S ribosomal protein L43, mitochondrial OS=Mus musculus GN=Mrpl43 PE=1 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.400e-6
Identity = 36/111 (32.43%), Postives = 52/111 (46.85%), Query Frame = 1 

		  

Query: 4   RGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKAFYR 63
           R V QLQ+L +S      SSRG R F+E  +      NP V V         P + A Y 
Sbjct: 21  RYVQQLQRLSLSLSRDAPSSRGAREFVEREVTDFARRNPGVVVYVNPRPCAMPRIVAEYL 80

Query: 64  NKNERVVCVKNMTQEDVLLHATRLRNALGRKVIKLKTRHVTKHPSVQGTWT 115
           N   R   V + + E++     +L +  G  VI+++    T +PS+QG WT
Sbjct: 81  NGAVREENVNSKSVEEIKSLVQKLADQSGLDVIRIRKPFHTDNPSIQGQWT 131
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BLAST of Spo22878.1 vs. TAIR (Arabidopsis)
Match: AT3G59650.2 (mitochondrial ribosomal protein L51/S25/CI-B8 family protein)

HSP 1 Score: 188.3 bits (477), Expect = 2.600e-48
Identity = 91/145 (62.76%), Postives = 110/145 (75.86%), Query Frame = 1 

		  

Query: 1   MSLRGVWQLQKLIVSYCDWGGSSRGIRAFMETHLPSIQESNPRVEVVTELIRGQHPHLKA 60
           M+LRGVWQL+KL+VSYC+WGGSSRGIRAFME+ LP+++E NP++EV+TEL RGQHP+LK 
Sbjct: 1   MALRGVWQLKKLVVSYCNWGGSSRGIRAFMESELPALKEKNPQLEVITELSRGQHPYLKG 60

Query: 61  FYR---------------------------NKNERVVCVKNMTQEDVLLHATRLRNALGR 119
            Y                            N+NERVVCVKNM  E+VLL+ATRLRN+LGR
Sbjct: 61  IYSMYISPLLNTILIQRLLILAISLAQFIGNRNERVVCVKNMDPEEVLLNATRLRNSLGR 120
The following BLAST results are available for this feature:
BLAST of Spo22878.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902160057|gb|KNA06384.1|1.2e-6199.1hypothetical protein SOVF_1809... [more]
gi|731323394|ref|XP_010672408.1|1.6e-5586.5PREDICTED: 54S ribosomal prote... [more]
gi|672118381|ref|XP_008782398.1|3.6e-5584.7PREDICTED: 54S ribosomal prote... [more]
gi|225434098|ref|XP_002276080.1|6.1e-5585.7PREDICTED: 54S ribosomal prote... [more]
gi|629098878|gb|KCW64643.1|1.8e-5483.9hypothetical protein EUGRSUZ_G... [more]
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BLAST of Spo22878.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QGG2_SPIOL8.0e-6299.1Uncharacterized protein OS=Spi... [more]
A0A0J8FHV9_BETVU1.1e-5586.5Uncharacterized protein OS=Bet... [more]
A5C6I0_VITVI4.3e-5585.7Putative uncharacterized prote... [more]
A0A059BEV2_EUCGR1.2e-5483.9Uncharacterized protein OS=Euc... [more]
A0A061EJZ0_THECC1.6e-5484.7Mitochondrial ribosomal protei... [more]
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BLAST of Spo22878.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
RM51_SCHPO2.0e-1332.354S ribosomal protein L51, mit... [more]
RM51_ASHGO5.1e-930.754S ribosomal protein L51, mit... [more]
RM51_YEAST1.6e-728.354S ribosomal protein L51, mit... [more]
RM43_MOUSE1.4e-632.439S ribosomal protein L43, mit... [more]
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BLAST of Spo22878.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G59650.22.6e-4862.7mitochondrial ribosomal protei... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007741Ribosomal protein/NADH dehydrogenase domainPFAMPF05047L51_S25_CI-B8coord: 26..76
score: 2.0
IPR007741Ribosomal protein/NADH dehydrogenase domainSMARTSM00916L51_S25_CI_B8_2coord: 18..91
score: 4.4
IPR012336Thioredoxin-like foldGENE3D3.40.30.10coord: 8..91
score: 1.0
IPR012336Thioredoxin-like foldunknownSSF52833Thioredoxin-likecoord: 8..90
score: 1.88
NoneNo IPR availablePANTHERPTHR2139639S RIBOSOMAL PROTEIN L43coord: 1..117
score: 8.6
NoneNo IPR availablePANTHERPTHR21396:SF239S RIBOSOMAL PROTEIN L43, MITOCHONDRIALcoord: 1..117
score: 8.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0006424 glutamyl-tRNA aminoacylation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006094 gluconeogenesis
biological_process GO:0034968 histone lysine methylation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0010498 proteasomal protein catabolic process
biological_process GO:0000338 protein deneddylation
biological_process GO:0009220 pyrimidine ribonucleotide biosynthetic process
biological_process GO:0009909 regulation of flower development
biological_process GO:0001510 RNA methylation
biological_process GO:0008152 metabolic process
biological_process GO:0043044 ATP-dependent chromatin remodeling
biological_process GO:0007010 cytoskeleton organization
biological_process GO:0006425 glutaminyl-tRNA aminoacylation
biological_process GO:0015994 chlorophyll metabolic process
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0006430 lysyl-tRNA aminoacylation
biological_process GO:0006448 regulation of translational elongation
biological_process GO:0009308 amine metabolic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0009585 red, far-red light phototransduction
biological_process GO:0009085 lysine biosynthetic process
biological_process GO:0016567 protein ubiquitination
biological_process GO:0006457 protein folding
cellular_component GO:0016020 membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0009332 glutamate-tRNA ligase complex
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005643 nuclear pore
cellular_component GO:0005730 nucleolus
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0005886 plasma membrane
cellular_component GO:0005853 eukaryotic translation elongation factor 1 complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005777 peroxisome
cellular_component GO:0005737 cytoplasm
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:1990904 ribonucleoprotein complex
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0016589 NURF complex
cellular_component GO:0000785 chromatin
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0005515 protein binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0008131 primary amine oxidase activity
molecular_function GO:0005507 copper ion binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0004818 glutamate-tRNA ligase activity
molecular_function GO:0017056 structural constituent of nuclear pore
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0004824 lysine-tRNA ligase activity
molecular_function GO:0004819 glutamine-tRNA ligase activity
molecular_function GO:0005488 binding
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0016887 ATPase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0031491 nucleosome binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003746 translation elongation factor activity
RNA-Seq Expression