Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCGGATGTTCTAAGAAAATCCATCGTTTTCTCTCCAAAAACTTCTCATCATAATAATCATAGTAAACGTAAATTTTTTCCCATCAAATGTTCATTTCCTGCAAATAATGGAGGCAGATTAGTTGGGATTTCTTCGAGGAGTAGTTTTGGTGGTGTGGGAACTGCGGTTGATCAAAATCGCAATATTTGGTCTCAAAAATCGAGGAACTTCCAATCAATTGGTGCCAAGGTTTGTGAAAAATTTCTGGGTTTCTTTGTTTTTATGGAATTTTGACACCCATGTTGTTTAGTTTCCTCTCTGTATTTGAATCTGATTGATTAGGTTATTAATTGATCATTAAACCTTCAAATAGCATATACTTCAATAATTGTTTAATTTTTTTATTGTTTACCTTTGTTGGTAGATAATTAGATATATGTCCCTTTTGGTATCCTTGATTATTGCTTGGTCTGAGGAGCTGGTAAATTTTCAATTTATGGGGTTTGTTTTTATCAATTCCAAAGTCAAGTTGGGCTCCAGCTTGTGAAAGAGGGATTATTTGTCAAAATATGTCTTTGTGTCATTGTATGTGCGTGGTTTGCTAGGACTTGTGTTTTGTGGTATGATAAGAGTGTTTTGAAAAGATTCGCCAGAATCGCCAGTTAGGTGGTGTAGGGAGGTCAAGCTGTATGAATTCTGCCTATAAGAGTACAAGGAAGTAAGTTGTATGAATTCCGCCATCAGGTGCAATCAAGAGGGGGTACAGGGATGTTGGTGTTGTGTGAATTCTGCCATTATGGTTTGTCGAAAAACTAATTTCAGAGGTCATGGCTGACAATCTGTGGAATTTGGATCTCTTGGATCTTTATGGCTTTGCTTTTGTCCATTGTTGCAATTTGTCTACCTGCTTTGTTCGAAGTTATACTATTGAGCCTATGTTCACTCTCTCTGGTTGCCAAGTGTGGCTTGTAATCTCATGTTTAGATAAGTTGGAAGGTTGAGTACTGCTCTTGTAGTAGTACTTAGTCTTTATTTGTAATGAATGCAGATGGGTCTTAGCATTGGCAAAGCACATAAGTGGTGGGAGAAAGGACTTCAACAAAATATGAGAGAGATAACTTCTGCAGAAGACCTAGTGGATTCTTTACTAAATGCAGGAGATAATTTGGTTGTCGTTGATTTTTTCTCTCCTGGATGTGGAGGCTGCAGGGCTCTTCATCCTAAGGTACCTTCATTCTATCAATCTTACATAGGTTTTCCTCTGGTTTGTTATATTAATGTTAAAGGGTGAAGAATTTATTAGTGTAGTATTATTCTTGTTGACTGCTTGAATCCCTTTGTATAACTAATTATCTGTGTTGGTTTATGCAGTTATGTCAGTTGGCAGAGATGAACCCTGATGTTCAGTTTCTCCAGGTGAACTATGAGGAGCACAAATCCATGTGTTATAGCCTTAATGTTCATGTTCTCCCTTTCTTTCGGTTCTACAGAGGCGCTGAAGGTCGCGTGTGCAGCTTCAGCTGCACAAATGCCACGGTTAGTTTGCTTTTCTCACACTCCTCTTCCTGCTGCTAGACTTGGTTTGGTTTGGTTTGGTTAGACGAGTAATTTATTCTCATTGTGTCATTGAAAAGCTTTATAATTGGTTAGGGAAAATTAGTTTAGTTGGTACTCCGTAGTTGATAACTGATAGAATTATCCAAATAAATGTATTACAGATTAAGAAATTCAAGGATGCTTTAGCCAAGCATGGAACAGATAGGAGCAGCCTTGCTCCAACTAAAGGGCTGGACGAGAAGGAGCTCGTTGCTCTTGCTGCTAACAAAGAACTTTCATTTACCTACACATCAAAACCAGTGGAAGCGGAACCTGTACCTGAGCACCAAGAAGTTTTAGTCAATGCTGACGATAAAGCTGCAGCGAAAGAGTCTCTTTCTTCCAACAGGAAAACTCTTGGCTCATCATCAACCTTAAGATCTGCTCAAGAGAACGAAGATAAAACTTTGGCCACTGCCAGGAGATGA ATGGCGGATGTTCTAAGAAAATCCATCGTTTTCTCTCCAAAAACTTCTCATCATAATAATCATAGTAAACGTAAATTTTTTCCCATCAAATGTTCATTTCCTGCAAATAATGGAGGCAGATTAGTTGGGATTTCTTCGAGGAGTAGTTTTGGTGGTGTGGGAACTGCGGTTGATCAAAATCGCAATATTTGGTCTCAAAAATCGAGGAACTTCCAATCAATTGGTGCCAAGATGGGTCTTAGCATTGGCAAAGCACATAAGTGGTGGGAGAAAGGACTTCAACAAAATATGAGAGAGATAACTTCTGCAGAAGACCTAGTGGATTCTTTACTAAATGCAGGAGATAATTTGGTTGTCGTTGATTTTTTCTCTCCTGGATGTGGAGGCTGCAGGGCTCTTCATCCTAAGTTATGTCAGTTGGCAGAGATGAACCCTGATGTTCAGTTTCTCCAGGTGAACTATGAGGAGCACAAATCCATGTGTTATAGCCTTAATGTTCATGTTCTCCCTTTCTTTCGGTTCTACAGAGGCGCTGAAGGTCGCGTGTGCAGCTTCAGCTGCACAAATGCCACGATTAAGAAATTCAAGGATGCTTTAGCCAAGCATGGAACAGATAGGAGCAGCCTTGCTCCAACTAAAGGGCTGGACGAGAAGGAGCTCGTTGCTCTTGCTGCTAACAAAGAACTTTCATTTACCTACACATCAAAACCAGTGGAAGCGGAACCTGTACCTGAGCACCAAGAAGTTTTAGTCAATGCTGACGATAAAGCTGCAGCGAAAGAGTCTCTTTCTTCCAACAGGAAAACTCTTGGCTCATCATCAACCTTAAGATCTGCTCAAGAGAACGAAGATAAAACTTTGGCCACTGCCAGGAGATGA ATGGCGGATGTTCTAAGAAAATCCATCGTTTTCTCTCCAAAAACTTCTCATCATAATAATCATAGTAAACGTAAATTTTTTCCCATCAAATGTTCATTTCCTGCAAATAATGGAGGCAGATTAGTTGGGATTTCTTCGAGGAGTAGTTTTGGTGGTGTGGGAACTGCGGTTGATCAAAATCGCAATATTTGGTCTCAAAAATCGAGGAACTTCCAATCAATTGGTGCCAAGATGGGTCTTAGCATTGGCAAAGCACATAAGTGGTGGGAGAAAGGACTTCAACAAAATATGAGAGAGATAACTTCTGCAGAAGACCTAGTGGATTCTTTACTAAATGCAGGAGATAATTTGGTTGTCGTTGATTTTTTCTCTCCTGGATGTGGAGGCTGCAGGGCTCTTCATCCTAAGTTATGTCAGTTGGCAGAGATGAACCCTGATGTTCAGTTTCTCCAGGTGAACTATGAGGAGCACAAATCCATGTGTTATAGCCTTAATGTTCATGTTCTCCCTTTCTTTCGGTTCTACAGAGGCGCTGAAGGTCGCGTGTGCAGCTTCAGCTGCACAAATGCCACGATTAAGAAATTCAAGGATGCTTTAGCCAAGCATGGAACAGATAGGAGCAGCCTTGCTCCAACTAAAGGGCTGGACGAGAAGGAGCTCGTTGCTCTTGCTGCTAACAAAGAACTTTCATTTACCTACACATCAAAACCAGTGGAAGCGGAACCTGTACCTGAGCACCAAGAAGTTTTAGTCAATGCTGACGATAAAGCTGCAGCGAAAGAGTCTCTTTCTTCCAACAGGAAAACTCTTGGCTCATCATCAACCTTAAGATCTGCTCAAGAGAACGAAGATAAAACTTTGGCCACTGCCAGGAGATGA MADVLRKSIVFSPKTSHHNNHSKRKFFPIKCSFPANNGGRLVGISSRSSFGGVGTAVDQNRNIWSQKSRNFQSIGAKMGLSIGKAHKWWEKGLQQNMREITSAEDLVDSLLNAGDNLVVVDFFSPGCGGCRALHPKLCQLAEMNPDVQFLQVNYEEHKSMCYSLNVHVLPFFRFYRGAEGRVCSFSCTNATIKKFKDALAKHGTDRSSLAPTKGLDEKELVALAANKELSFTYTSKPVEAEPVPEHQEVLVNADDKAAAKESLSSNRKTLGSSSTLRSAQENEDKTLATARR Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22879.1 vs. NCBI nr
Match: gi|902160059|gb|KNA06386.1| (hypothetical protein SOVF_181010 isoform A [Spinacia oleracea]) HSP 1 Score: 580.1 bits (1494), Expect = 2.200e-162 Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 1
BLAST of Spo22879.1 vs. NCBI nr
Match: gi|902160060|gb|KNA06387.1| (hypothetical protein SOVF_181010 isoform B [Spinacia oleracea]) HSP 1 Score: 428.7 bits (1101), Expect = 8.100e-117 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
BLAST of Spo22879.1 vs. NCBI nr
Match: gi|731323392|ref|XP_010672407.1| (PREDICTED: thioredoxin-like 1-1, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 414.8 bits (1065), Expect = 1.200e-112 Identity = 227/296 (76.69%), Postives = 242/296 (81.76%), Query Frame = 1
BLAST of Spo22879.1 vs. NCBI nr
Match: gi|645270403|ref|XP_008240443.1| (PREDICTED: thioredoxin-like 1-1, chloroplastic isoform X2 [Prunus mume]) HSP 1 Score: 325.5 bits (833), Expect = 9.600e-86 Identity = 178/297 (59.93%), Postives = 212/297 (71.38%), Query Frame = 1
BLAST of Spo22879.1 vs. NCBI nr
Match: gi|645270401|ref|XP_008240442.1| (PREDICTED: thioredoxin-like 1-1, chloroplastic isoform X1 [Prunus mume]) HSP 1 Score: 325.1 bits (832), Expect = 1.300e-85 Identity = 178/298 (59.73%), Postives = 212/298 (71.14%), Query Frame = 1
BLAST of Spo22879.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QII5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181010 PE=4 SV=1) HSP 1 Score: 580.1 bits (1494), Expect = 1.500e-162 Identity = 291/292 (99.66%), Postives = 291/292 (99.66%), Query Frame = 1
BLAST of Spo22879.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGL9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_181010 PE=4 SV=1) HSP 1 Score: 428.7 bits (1101), Expect = 5.600e-117 Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 1
BLAST of Spo22879.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CP16_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g058440 PE=4 SV=1) HSP 1 Score: 414.8 bits (1065), Expect = 8.400e-113 Identity = 227/296 (76.69%), Postives = 242/296 (81.76%), Query Frame = 1
BLAST of Spo22879.1 vs. UniProtKB/TrEMBL
Match: M5W2V2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009372mg PE=4 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 1.100e-85 Identity = 178/297 (59.93%), Postives = 212/297 (71.38%), Query Frame = 1
BLAST of Spo22879.1 vs. UniProtKB/TrEMBL
Match: M5VQP2_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009372mg PE=4 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 1.500e-85 Identity = 178/298 (59.73%), Postives = 212/298 (71.14%), Query Frame = 1
BLAST of Spo22879.1 vs. ExPASy Swiss-Prot
Match: TRL11_ARATH (Thioredoxin-like 1-1, chloroplastic OS=Arabidopsis thaliana GN=At1g08570 PE=2 SV=1) HSP 1 Score: 295.0 bits (754), Expect = 8.700e-79 Identity = 166/297 (55.89%), Postives = 198/297 (66.67%), Query Frame = 1
BLAST of Spo22879.1 vs. ExPASy Swiss-Prot
Match: TRL12_ORYSJ (Thioredoxin-like 1-2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0326500 PE=2 SV=1) HSP 1 Score: 280.8 bits (717), Expect = 1.700e-74 Identity = 152/249 (61.04%), Postives = 178/249 (71.49%), Query Frame = 1
BLAST of Spo22879.1 vs. ExPASy Swiss-Prot
Match: TRL11_ORYSJ (Thioredoxin-like 1-1, chloroplastic OS=Oryza sativa subsp. japonica GN=Os07g0684100 PE=2 SV=1) HSP 1 Score: 275.0 bits (702), Expect = 9.400e-73 Identity = 134/192 (69.79%), Postives = 155/192 (80.73%), Query Frame = 1
BLAST of Spo22879.1 vs. ExPASy Swiss-Prot
Match: TRL13_ARATH (Thioredoxin-like 1-3, chloroplastic OS=Arabidopsis thaliana GN=At2g33270 PE=2 SV=1) HSP 1 Score: 253.1 bits (645), Expect = 3.800e-66 Identity = 118/190 (62.11%), Postives = 148/190 (77.89%), Query Frame = 1
BLAST of Spo22879.1 vs. ExPASy Swiss-Prot
Match: TRL12_ARATH (Thioredoxin-like 1-2, chloroplastic OS=Arabidopsis thaliana GN=At5g61440 PE=2 SV=1) HSP 1 Score: 224.2 bits (570), Expect = 1.900e-57 Identity = 108/165 (65.45%), Postives = 129/165 (78.18%), Query Frame = 1
BLAST of Spo22879.1 vs. TAIR (Arabidopsis)
Match: AT1G08570.1 (atypical CYS HIS rich thioredoxin 4) HSP 1 Score: 295.0 bits (754), Expect = 4.900e-80 Identity = 166/297 (55.89%), Postives = 198/297 (66.67%), Query Frame = 1
BLAST of Spo22879.1 vs. TAIR (Arabidopsis)
Match: AT2G33270.1 (atypical CYS HIS rich thioredoxin 3) HSP 1 Score: 253.1 bits (645), Expect = 2.100e-67 Identity = 118/190 (62.11%), Postives = 148/190 (77.89%), Query Frame = 1
BLAST of Spo22879.1 vs. TAIR (Arabidopsis)
Match: AT5G61440.1 (atypical CYS HIS rich thioredoxin 5) HSP 1 Score: 224.2 bits (570), Expect = 1.100e-58 Identity = 108/165 (65.45%), Postives = 129/165 (78.18%), Query Frame = 1
BLAST of Spo22879.1 vs. TAIR (Arabidopsis)
Match: AT4G26160.1 (atypical CYS HIS rich thioredoxin 1) HSP 1 Score: 151.8 bits (382), Expect = 6.700e-37 Identity = 84/198 (42.42%), Postives = 125/198 (63.13%), Query Frame = 1
BLAST of Spo22879.1 vs. TAIR (Arabidopsis)
Match: AT4G29670.2 (atypical CYS HIS rich thioredoxin 2) HSP 1 Score: 129.4 bits (324), Expect = 3.600e-30 Identity = 58/108 (53.70%), Postives = 79/108 (73.15%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22879.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22879.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22879.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22879.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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