Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTAAATTATAATTAGTGTTCTTACTTGGCTATCTATTAAATTCCCTTATCTGAACAATAAGCTCAATCGTACGACTCCCTTCCACTTTGTTTGATCCTTTCCCAACCGACCATAGTCTTTATGGACTATAGTGTGTTAGAGCTAATTACTACAGAGTACTCATTTTCATTACATTATCTCTCTTTCTTCCTCTTTCTCTTTCTTCTTTTCTCTCTCTCTATTTTCCCCCTTTCTCTCTCTAAGATTGATCAAATAAATTGAACAAGTAAAGAAATTTGTATTTTTGTTGTCTATTTAAACTGAACAAAAATAAAATCAGAGAAAGATATCAATGGAGTTCAGTACTTCAGAGCGCGTCTGCTATGTTCACTGCACCTTCTGCAACACCATTTTAGCGGTATTCCATCTCATTTTACCTGCACTTTTAACTTATTCTTCTAATTCCAATAAACTACACCAACTTCTAAATTATTTCTCTTTTTATGAGATCAAAACCCTTGAATTTGTTTTTTAAAAAACCCCTTGAATCTTTGTCTTATTTCATGGGAATTGATTACTTGATTAGCACAATTAATTTTATCATTTCTGAAGTATTAGGTTTAGATTTATTTTACCTCTTGCGAGAAGGGGATCCTACTATATTCTATCTTCAATTCTTATAAAGGATGATACTCCGTTCTTGGTATTAGGTTTAGATAAATAAATATGTTTATAGTTTTTTATTAAATTATTTTATACTCGATCAGTATAGATTAGGGTTCATCTTCAATTTCGCTCTCTTTTTTCTGGTTAATTAAATTAAACTTTATTGGGTGGAATTTAAATTGGAGGGTGTTGGAATGATAATCATATGTCAGTGACTTATGATTCATCATCATTCATCTGTACCAGTTTTGCATTTCAACAGTCCTTTATTTTTCTGTACATATTGAAAATGTCTTTTTATTTTTATTTGTTTTATTTTACTTCCTTAGCTAGGGTTAATATTTGTCTTTCTTTTGTACTAGGAGTATAATATATCTTCAAATATATATATGACCTCTCTTTTCTCCGATGGATTCATGACGATTCTCTCTTTTTGATAAAAAAATGAGTCATATCGTTTTCGGTTTACTTTACTTTTTCATGACTTTATGAGGGGAGATGTCAGGGATTGGGAACCCAGGAATGGCAGCAAAAATGGATACAGAATTGTTATTTAGGGTTGTCTTTTTTCATATTGTTCTGCATATAACTTTATACCAAGCATATACTAGTACAGTACAATACTGAATACTTCCTCCCTCTCATTTGAATCCTTTCGTTGTTGTTAACTATGGAAATATTCCATTATGAATCCCGTTGTTATTATGTTTAAGTGCTAATTAATTAATTAGATTAATCTTGTAAAAGCACCAGTAATGATTTAATTAACTTTCGAGAAACCTAATAGTTATTTTCAAAATAAAATGCATTAAAAGATGTGGGATGTGTGACAGTATTTTGTTTTAAATGTAGGGCTTAAATCAATTACAAAGTATAAAACAACAATTCGGTCTTTAGATCAAATATAAAAGATTTAACTGATCTAAATGTGAATACAATAAGTCTCGTGTTCAAATTCTCTACTTATATGATCATAAATAATTGGGTTGATATAAGTACGTCTCTTATAGATCGACAAGACAAAGCAGAAAAAACATGACAACTAAATCTGGACGGAACGCAGGTTATGTATATAGTCCGTACAGATGGAGGTTTTTCTGATAAAATGTATGATATGGTAGGTGAGTGTGCCTTGCTGCAGCATATACAACTTGGTAACAGTAAGATGTGGTCATTGTGCCAACCTTCTTTCTGTTAACATAGGAGTTTCCCCTCCATCTGTTCCTAATCAAGAAAATAGTTTCCAGGTAAAACCTACTCTTTAAACTTTAATTAATTTTTAGGCCAGGATTAATATAAGGCTTTCATTAATTAATATTGATCTTCAATTTATTCATTATAATAAATAATAAATATATAGTTGATGAGGCAGCACTATAGTAATTACCAAGATGTGAGCAAGGATAGTAGTACTATGACAGGAGGCTCATCATCGTCAACTATTACTACAATGACTTCTGATCAGCATGATGATCAACAATCTCGACTCTCGCCCATTCGTCGTAAGTTGTTCAATTTTGAAAAATATTAATTTTATCACAAGGAGTAGCTACTATGATATAGTATATTGCAATTTTGTCTAGGTTAATTAGCACATTAATTTCTTAGTTAAAAGACTGGTCAGCAAAAAATAAGTTATTCATTTAATTCTCACTTTGTTTAGTCCAATCATGTCAAAGTAATATAACTGAATTAAAGATTGGTTAAAGCAGAGCGAATATGATATGCTACAGAGGAATAGACGATGAGGGGCTCGTTTTTTCGGATATCAGATATGTGTAGCAACACATATCAGCTAAAAGACAAAAAAAAAAGGAAGTACCATCCATGTTAAAAAAGTACCATAAAAACGTACTCCGTACCATTTAATTTCATTTTTGTCTTTTTTCCTATTTTGTCTTTTGCTATGATATGCATTTGCAAGCACATATCAGATATCCGAAAATACTTGCTCCGATGATGAGGCCGGTAGGAGCCTTAGATGTTGTTACCTAAGCTTTAGTTAGTCAAACAAATTACCAATATTAATTATGGGTCACGTCGATTAGCTAGTAGTGTGATTTGTATAATAGAATTATATATGTTACTCTACATTTTAAAGTTTGGTAATATTTTTGTATAACTGGTATACATGCAGCCCCAGAAAAGAGACAACGCGTTCCTTCGGCTTATAACAAATTTATAAAGTAAGGAATCACGTACGTACTACATAATTAATTAGTTTCCTTTGAAATTAAAAGTTGTTGCAAATTAATTAATTCCTTAATTTTGTTATCTGGTTCAAGAGAGGAAATCCAAAGGATAAAAGCTAGCAATCCTGAAATTAGCCATAGAGAGGCCTTCAGTGCAGCTGCTAAGAATGTGAGTCCTTTTTAACCTTACTACACTGCTCTTTTCACTTTTTATTTCTAATTTCTATCTATCACAATTCACAAGTCATCGATCTACTACAAATTTAAATAGCCGATTTTACCTATTATACACTCGCACGTGTCACGTGTGTGCCTAATCTATTCAAGTTACCCTATAGTAATATATACTACGAGTAGTAAAAAATAATGTTGGGTGGTTTGACAGTGGGCACATTTTCCCCATATTCACTTTGGCTTAAATCTGGATTTGGATGGGCAAAGGCAAGCAAGATTGGACCAGGCAGTTGCTGGGATCGAAGGGACAAACAAGTCTCATGGATTCTACTAAATCCATAGTTACTCTTTCTACTTTTTGTCACTGCATAATTATTAGTTAGCTAAGTTAATCAACCTATGCTAACTTTGTTCACTATATATATATTACATATATACACAGTAATTCAAATTACTATATTGTACTATATATGTACGTACTTTATTATTATGAGTTATATGCATTACTAATGTATTGTGACGGTAAACTCTCATCTTTTAATTTAATGTTCCTTGCTTGCAATTGCATAAAAAAAATAAGTTGATCAAGTG CTAAATTATAATTAGTGTTCTTACTTGGCTATCTATTAAATTCCCTTATCTGAACAATAAGCTCAATCGTACGACTCCCTTCCACTTTGTTTGATCCTTTCCCAACCGACCATAGTCTTTATGGACTATAGTGTGTTAGAGCTAATTACTACAGAGTACTCATTTTCATTACATTATCTCTCTTTCTTCCTCTTTCTCTTTCTTCTTTTCTCTCTCTCTATTTTCCCCCTTTCTCTCTCTAAGATTGATCAAATAAATTGAACAAGTAAAGAAATTTGTATTTTTGTTGTCTATTTAAACTGAACAAAAATAAAATCAGAGAAAGATATCAATGGAGTTCAGTACTTCAGAGCGCGTCTGCTATGTTCACTGCACCTTCTGCAACACCATTTTAGCGGTGAGTGTGCCTTGCTGCAGCATATACAACTTGGTAACAGTAAGATGTGGTCATTGTGCCAACCTTCTTTCTGTTAACATAGGAGTTTCCCCTCCATCTGTTCCTAATCAAGAAAATAGTTTCCAGTTGATGAGGCAGCACTATAGTAATTACCAAGATGTGAGCAAGGATAGTAGTACTATGACAGGAGGCTCATCATCGTCAACTATTACTACAATGACTTCTGATCAGCATGATGATCAACAATCTCGACTCTCGCCCATTCGTCCCCCAGAAAAGAGACAACGCGTTCCTTCGGCTTATAACAAATTTATAAAAGAGGAAATCCAAAGGATAAAAGCTAGCAATCCTGAAATTAGCCATAGAGAGGCCTTCAGTGCAGCTGCTAAGAATTGGGCACATTTTCCCCATATTCACTTTGGCTTAAATCTGGATTTGGATGGGCAAAGGCAAGCAAGATTGGACCAGGCAGTTGCTGGGATCGAAGGGACAAACAAGTCTCATGGATTCTACTAAATCCATAGTTACTCTTTCTACTTTTTGTCACTGCATAATTATTAGTTAGCTAAGTTAATCAACCTATGCTAACTTTGTTCACTATATATATATTACATATATACACAGTAATTCAAATTACTATATTGTACTATATATGTACGTACTTTATTATTATGAGTTATATGCATTACTAATGTATTGTGACGGTAAACTCTCATCTTTTAATTTAATGTTCCTTGCTTGCAATTGCATAAAAAAAATAAGTTGATCAAGTG ATGGAGTTCAGTACTTCAGAGCGCGTCTGCTATGTTCACTGCACCTTCTGCAACACCATTTTAGCGGTGAGTGTGCCTTGCTGCAGCATATACAACTTGGTAACAGTAAGATGTGGTCATTGTGCCAACCTTCTTTCTGTTAACATAGGAGTTTCCCCTCCATCTGTTCCTAATCAAGAAAATAGTTTCCAGTTGATGAGGCAGCACTATAGTAATTACCAAGATGTGAGCAAGGATAGTAGTACTATGACAGGAGGCTCATCATCGTCAACTATTACTACAATGACTTCTGATCAGCATGATGATCAACAATCTCGACTCTCGCCCATTCGTCCCCCAGAAAAGAGACAACGCGTTCCTTCGGCTTATAACAAATTTATAAAAGAGGAAATCCAAAGGATAAAAGCTAGCAATCCTGAAATTAGCCATAGAGAGGCCTTCAGTGCAGCTGCTAAGAATTGGGCACATTTTCCCCATATTCACTTTGGCTTAAATCTGGATTTGGATGGGCAAAGGCAAGCAAGATTGGACCAGGCAGTTGCTGGGATCGAAGGGACAAACAAGTCTCATGGATTCTACTAA MEFSTSERVCYVHCTFCNTILAVSVPCCSIYNLVTVRCGHCANLLSVNIGVSPPSVPNQENSFQLMRQHYSNYQDVSKDSSTMTGGSSSSTITTMTSDQHDDQQSRLSPIRPPEKRQRVPSAYNKFIKEEIQRIKASNPEISHREAFSAAAKNWAHFPHIHFGLNLDLDGQRQARLDQAVAGIEGTNKSHGFY Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22903.1 vs. NCBI nr
Match: gi|902074255|gb|KNA03027.1| (hypothetical protein SOVF_213090 isoform A, partial [Spinacia oleracea]) HSP 1 Score: 342.0 bits (876), Expect = 6.600e-91 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
BLAST of Spo22903.1 vs. NCBI nr
Match: gi|902074256|gb|KNA03028.1| (hypothetical protein SOVF_213090 isoform B, partial [Spinacia oleracea]) HSP 1 Score: 328.9 bits (842), Expect = 5.800e-87 Identity = 167/171 (97.66%), Postives = 167/171 (97.66%), Query Frame = 1
BLAST of Spo22903.1 vs. NCBI nr
Match: gi|731348399|ref|XP_010685466.1| (PREDICTED: putative axial regulator YABBY 2 isoform X1 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 324.3 bits (830), Expect = 1.400e-85 Identity = 171/194 (88.14%), Postives = 179/194 (92.27%), Query Frame = 1
BLAST of Spo22903.1 vs. NCBI nr
Match: gi|731348401|ref|XP_010685467.1| (PREDICTED: putative axial regulator YABBY 2 isoform X2 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 313.2 bits (801), Expect = 3.300e-82 Identity = 167/194 (86.08%), Postives = 174/194 (89.69%), Query Frame = 1
BLAST of Spo22903.1 vs. NCBI nr
Match: gi|661880727|emb|CDP15572.1| (unnamed protein product [Coffea canephora]) HSP 1 Score: 229.6 bits (584), Expect = 4.800e-57 Identity = 122/190 (64.21%), Postives = 145/190 (76.32%), Query Frame = 1
BLAST of Spo22903.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q773_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_213090 PE=4 SV=1) HSP 1 Score: 342.0 bits (876), Expect = 4.600e-91 Identity = 171/171 (100.00%), Postives = 171/171 (100.00%), Query Frame = 1
BLAST of Spo22903.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q8J8_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_213090 PE=4 SV=1) HSP 1 Score: 328.9 bits (842), Expect = 4.000e-87 Identity = 167/171 (97.66%), Postives = 167/171 (97.66%), Query Frame = 1
BLAST of Spo22903.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BY87_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171330 PE=4 SV=1) HSP 1 Score: 324.3 bits (830), Expect = 9.900e-86 Identity = 171/194 (88.14%), Postives = 179/194 (92.27%), Query Frame = 1
BLAST of Spo22903.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BTU3_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171330 PE=4 SV=1) HSP 1 Score: 313.2 bits (801), Expect = 2.300e-82 Identity = 167/194 (86.08%), Postives = 174/194 (89.69%), Query Frame = 1
BLAST of Spo22903.1 vs. UniProtKB/TrEMBL
Match: I1M471_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_13G311200 PE=4 SV=1) HSP 1 Score: 229.6 bits (584), Expect = 3.300e-57 Identity = 126/193 (65.28%), Postives = 145/193 (75.13%), Query Frame = 1
BLAST of Spo22903.1 vs. ExPASy Swiss-Prot
Match: YAB2_ARATH (Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2 PE=1 SV=1) HSP 1 Score: 206.1 bits (523), Expect = 3.500e-52 Identity = 117/191 (61.26%), Postives = 135/191 (70.68%), Query Frame = 1
BLAST of Spo22903.1 vs. ExPASy Swiss-Prot
Match: YAB3_ARATH (Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 2.800e-41 Identity = 103/212 (48.58%), Postives = 132/212 (62.26%), Query Frame = 1
BLAST of Spo22903.1 vs. ExPASy Swiss-Prot
Match: YAB2_ORYSJ (Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 4.000e-40 Identity = 90/174 (51.72%), Postives = 121/174 (69.54%), Query Frame = 1
BLAST of Spo22903.1 vs. ExPASy Swiss-Prot
Match: YAB6_ORYSJ (Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1) HSP 1 Score: 164.9 bits (416), Expect = 9.000e-40 Identity = 98/204 (48.04%), Postives = 126/204 (61.76%), Query Frame = 1
BLAST of Spo22903.1 vs. ExPASy Swiss-Prot
Match: YAB5_ARATH (Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=1 SV=1) HSP 1 Score: 164.1 bits (414), Expect = 1.500e-39 Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 1
BLAST of Spo22903.1 vs. TAIR (Arabidopsis)
Match: AT1G08465.1 (Plant-specific transcription factor YABBY family protein) HSP 1 Score: 206.1 bits (523), Expect = 2.000e-53 Identity = 117/191 (61.26%), Postives = 135/191 (70.68%), Query Frame = 1
BLAST of Spo22903.1 vs. TAIR (Arabidopsis)
Match: AT4G00180.1 (Plant-specific transcription factor YABBY family protein) HSP 1 Score: 169.9 bits (429), Expect = 1.600e-42 Identity = 103/212 (48.58%), Postives = 132/212 (62.26%), Query Frame = 1
BLAST of Spo22903.1 vs. TAIR (Arabidopsis)
Match: AT2G26580.1 (plant-specific transcription factor YABBY family protein) HSP 1 Score: 164.1 bits (414), Expect = 8.700e-41 Identity = 90/166 (54.22%), Postives = 115/166 (69.28%), Query Frame = 1
BLAST of Spo22903.1 vs. TAIR (Arabidopsis)
Match: AT2G45190.1 (Plant-specific transcription factor YABBY family protein) HSP 1 Score: 161.4 bits (407), Expect = 5.600e-40 Identity = 101/201 (50.25%), Postives = 122/201 (60.70%), Query Frame = 1
BLAST of Spo22903.1 vs. TAIR (Arabidopsis)
Match: AT1G23420.1 (Plant-specific transcription factor YABBY family protein) HSP 1 Score: 127.1 bits (318), Expect = 1.200e-29 Identity = 77/173 (44.51%), Postives = 101/173 (58.38%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22903.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22903.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22903.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22903.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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