Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGCTATTGTCAACATCTCATCAAAGTCGAGTGACCAAAATATTATAGCTAACCGATTCTCAATAAATCCATCGAATTCCAATATTCAGAGTTCAAAGACGGATCACAAAAGGTGGTTGTTAAGCTTTTAGACAGTGAAATCATGGCGATTTGCAATCTTAAAGTCATCCTCTTTTTCTGGGTTTGTTTGGCTGTTCCTTCTATTTTAGCCAAACACGTTGTTAAAAATTGCGGTGATTCACTTCCTCCTACTCTCTTCTCATCTTTCCCTCTCTATTATTTTCCCAATTATGAGTAGTATTTACTGATTGCATTTTGGGAAATTGATGAACAATTTTATGTTAACTATGGGTTGATTGGGGGTAATTCGTCCTCTTTATTATTCGAAAACCCTATAAATTTGGGATTTAAATTGAACACCNCCCCCCCCCCCCCCCCCCCTTTTTTTTGAAGTTGCTCTCATGATCATGCATGCTTATATCTTTATGAAATCTGTAATGGGTACGTATTAATTTGATTTGTACTTGTATAAAAGTTCAAAAGAATTGAGCTTTTGTTTTGTTTTTATTTTGATGCAGATAAGAAAGCTAATTATGCTGTTAAGGTCAAAGGAGTAGAAATGCAGCCTGATCCAGTTGTACCTGGGAAGGAAGCTGTCTTCAGCATCTCTGCCTCAACTGGTATTTTATCGCTCTAATCAATTGGTCCAAATTAGAGAAATGGGGAATACAAGATTGTTACTTGTTCAAACATTGTGCTGTTATAGTGTGAATTTCTTTTATGTTTTAGATTAGAAAGCCTTAAGGAAGCATATAATGATATTTTAGTGATTAGTTTAAAAGGAGAGGATGTTTGTTTCGAGTTGAGAAGCGTTGATTAAGGTTATGGGTTCGTTTGATTTTCGAGTGATTGCAAATTGCAATGCTTAAATAATTTGGGAGATTAAATTCACAAATTCCATGTTGTGATCCTGTTCTGGTGACATGATACTATTCTCCAAACTTGTGTGTATTATAGATATAAATGCCTGTAATTGCAAGAGTAAGGATCCTAAAACTTAGCTATTGTGACAGACTGACAGTTTAGTTTAAAATGTATGAAAAAGGTTGGATGGGGCATTGTCCATAGTTGTGCATTAAGGTCTCTAGTGAAGTGAGCCGTTGGCTTGGATATGAGATCTCCTTGCCTCCGCCACACTCAATACTGGCTGACTTCTGAGGCTGTGTGAATAACCAAGTTATACATATATGTGCTCAAGAATTAAGTGATGTTGAAAGCAAGACATATCTTAATTGATACTTTTAGCCCTTGTTTTATTGATGGCAAGTTTCTATAAATTTGGAATTGACCCCTTGTCTCGAGTTGGTCGTTGAATGGGGACCATCCTAATTCATATGTACTCCCTCCGTCCCGGAATACTCGACCCGGTTTGACCGGCACAGAGTTTAAGGGACTTGAATTGACTTATTTAATTTAATAGGTAGTAGTTGATAGTGGGGTATTATTTTAATGTAGTTAGTGGGAAATGTGTTAAGGGGTGGGGTTGGGGGAGAGTAGGGGTTGAATTTTTAATTATTTTTTGTATGGAGTAGGGGGTAGGTGGGTTAATAGGAGTGGAGTGAGAAATAATATAATATTATTAGAATATTTACATTTTTAGAAACATGCCAAGTATTAAGGGACGGCCCGATAATGAAAACAGGTCGAGTATTCCGGGACGGAGGGAGTAGCTTTTTCTTGTTGTGAGAGCCATTCAACTCAGAGGCTATGCCGTAAAGGGGTAACAAGAAAGGGAAAGAGAATTGGAGATCCTGATTCCCTTTCATTCAATACTCATTCCTTAAAAGAGAAAACCACTACCGTGTCCATGATGAAGGATCCTGGAACTGATTACCAACACCACTGTTAATGCCATCACAGCTACTTGCACTGCCAAACGCCATGTGGAGTCTAGACCAGTGACACCATGACCACCCATATTTGGCCATGCCGACCATTTTTAACAGCCCTAAACACAGTGGTTTATTAATGGCCTAGCCTGAATCAAATGCAAATGATCAGAGCTAAAACCTAATTGCTACATGAAATATTGAAAGCTTTACATTGTATCACGAATTAAAAGATGTGAGTCATAACTGGTAGAATTCGATCACTGAGGTCCTATAATCTGGACAGTGGTCAAAGTCGTCCTCTAAACTACCAGATATGATATGAAGGACGATGCTCATACAATTAGAGGAGATGTGAAGGAGGTGGAAGGGAGAAAGTGTGAAACCTGAGGTTGGTTCTTTTAATGATTAAAAAAGAATCCGTGAAAGTTGATATTATTAATGGTAGTTATCTGCTTATGGAAACTGGGGGTGTTTGTCAAGGTGGGCAGTGCTTGAATGTTATAGAGTCATCCACCCTTTCTTCTGTTCTATCCAAACATTAATGGACGCAGCCCTTTTTTTCTTTATCTTCTTCTTCTTCTTCTGATTGAGAGGTCAATTGTGAATTTGTGATTGTTCCATACCGCCGTTGTAGTGCTGCAAGTGTTGTGTTGATATTATGATAATTTACTGGTCTGATCTGGAGTTTATGGTTGATGCAGTGGAAGCTATCTCTGGAGGGAAGGTGATGATCGATGTTTCATACTTTGGAATACATGTGCACAGTGAGACTATTGATCTGTGCAAAGAAACGTCTTGTCCGATATCAGCAGGGGACTTTGTACTTTCTCATAAACAAACTCTGCCAATTTTCACTCCCCCAGTAAGTCATTTTTCTTCCATTCATGTTTGACCTATCATCTATTTCAATAACTCCTATATTGGAGTATGTGGCCTCTGTTTTCTCCTAGCATATCTAACCTTTTTATTATTTATTGGAACTGTTAGGGCTCATATACTCTCAAGTTGAGGATAAACAACAGCAATCAGCTGCTTACTTGCGCCAGTTTTGGTTTCACCATTGGCTTTGGAGGATCTGCTTATGATAGCTGACCGCTTTCTGCAAAATAATGCTTTGTGTATTATAAATGTTTTTTTTTAATGTATGGTACAACGTATGACTATTGACACTCTCGTGTGGCAATGTGGATAATAATGTATGAATTCTGATGAAGCTATTAGATGCAGAAGCTTATGCATGTCTTCCTTCACTCTTTACTGCAGCGTTATCCATATTTTATTTTACATTTTCTCACCCCCTTTTGCCGCAAATTTATAGCAATATAAGTTATACAACTACAACAGCAGCG AAAGCTATTGTCAACATCTCATCAAAGTCGAGTGACCAAAATATTATAGCTAACCGATTCTCAATAAATCCATCGAATTCCAATATTCAGAGTTCAAAGACGGATCACAAAAGGTGGTTGTTAAGCTTTTAGACAGTGAAATCATGGCGATTTGCAATCTTAAAGTCATCCTCTTTTTCTGGGTTTGTTTGGCTGTTCCTTCTATTTTAGCCAAACACGTTGTTAAAAATTGCGATAAGAAAGCTAATTATGCTGTTAAGGTCAAAGGAGTAGAAATGCAGCCTGATCCAGTTGTACCTGGGAAGGAAGCTGTCTTCAGCATCTCTGCCTCAACTGTGGAAGCTATCTCTGGAGGGAAGGTGATGATCGATGTTTCATACTTTGGAATACATGTGCACAGTGAGACTATTGATCTGTGCAAAGAAACGTCTTGTCCGATATCAGCAGGGGACTTTGTACTTTCTCATAAACAAACTCTGCCAATTTTCACTCCCCCAGGCTCATATACTCTCAAGTTGAGGATAAACAACAGCAATCAGCTGCTTACTTGCGCCAGTTTTGGTTTCACCATTGGCTTTGGAGGATCTGCTTATGATAGCTGACCGCTTTCTGCAAAATAATGCTTTGTGTATTATAAATGTTTTTTTTTAATGTATGGTACAACGTATGACTATTGACACTCTCGTGTGGCAATGTGGATAATAATGTATGAATTCTGATGAAGCTATTAGATGCAGAAGCTTATGCATGTCTTCCTTCACTCTTTACTGCAGCGTTATCCATATTTTATTTTACATTTTCTCACCCCCTTTTGCCGCAAATTTATAGCAATATAAGTTATACAACTACAACAGCAGCG ATGGCGATTTGCAATCTTAAAGTCATCCTCTTTTTCTGGGTTTGTTTGGCTGTTCCTTCTATTTTAGCCAAACACGTTGTTAAAAATTGCGATAAGAAAGCTAATTATGCTGTTAAGGTCAAAGGAGTAGAAATGCAGCCTGATCCAGTTGTACCTGGGAAGGAAGCTGTCTTCAGCATCTCTGCCTCAACTGTGGAAGCTATCTCTGGAGGGAAGGTGATGATCGATGTTTCATACTTTGGAATACATGTGCACAGTGAGACTATTGATCTGTGCAAAGAAACGTCTTGTCCGATATCAGCAGGGGACTTTGTACTTTCTCATAAACAAACTCTGCCAATTTTCACTCCCCCAGGCTCATATACTCTCAAGTTGAGGATAAACAACAGCAATCAGCTGCTTACTTGCGCCAGTTTTGGTTTCACCATTGGCTTTGGAGGATCTGCTTATGATAGCTGA MAICNLKVILFFWVCLAVPSILAKHVVKNCDKKANYAVKVKGVEMQPDPVVPGKEAVFSISASTVEAISGGKVMIDVSYFGIHVHSETIDLCKETSCPISAGDFVLSHKQTLPIFTPPGSYTLKLRINNSNQLLTCASFGFTIGFGGSAYDS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22907.1 vs. NCBI nr
Match: gi|902202386|gb|KNA14264.1| (hypothetical protein SOVF_109060, partial [Spinacia oleracea]) HSP 1 Score: 306.6 bits (784), Expect = 2.400e-80 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
BLAST of Spo22907.1 vs. NCBI nr
Match: gi|731348393|ref|XP_010685463.1| (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 250.0 bits (637), Expect = 2.700e-63 Identity = 124/153 (81.05%), Postives = 139/153 (90.85%), Query Frame = 1
BLAST of Spo22907.1 vs. NCBI nr
Match: gi|225464822|ref|XP_002270174.1| (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Vitis vinifera]) HSP 1 Score: 181.4 bits (459), Expect = 1.200e-42 Identity = 93/155 (60.00%), Postives = 116/155 (74.84%), Query Frame = 1
BLAST of Spo22907.1 vs. NCBI nr
Match: gi|147804852|emb|CAN64691.1| (hypothetical protein VITISV_030670 [Vitis vinifera]) HSP 1 Score: 181.0 bits (458), Expect = 1.500e-42 Identity = 93/155 (60.00%), Postives = 116/155 (74.84%), Query Frame = 1
BLAST of Spo22907.1 vs. NCBI nr
Match: gi|719975509|ref|XP_010247799.1| (PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Nelumbo nucifera]) HSP 1 Score: 177.6 bits (449), Expect = 1.700e-41 Identity = 88/144 (61.11%), Postives = 108/144 (75.00%), Query Frame = 1
BLAST of Spo22907.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R5P9_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_109060 PE=4 SV=1) HSP 1 Score: 306.6 bits (784), Expect = 1.700e-80 Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 1
BLAST of Spo22907.1 vs. UniProtKB/TrEMBL
Match: A0A0J8EPQ2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g171300 PE=4 SV=1) HSP 1 Score: 250.0 bits (637), Expect = 1.900e-63 Identity = 124/153 (81.05%), Postives = 139/153 (90.85%), Query Frame = 1
BLAST of Spo22907.1 vs. UniProtKB/TrEMBL
Match: D7TCN7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0080g01240 PE=4 SV=1) HSP 1 Score: 181.4 bits (459), Expect = 8.200e-43 Identity = 93/155 (60.00%), Postives = 116/155 (74.84%), Query Frame = 1
BLAST of Spo22907.1 vs. UniProtKB/TrEMBL
Match: A5ALT4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030670 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 1.100e-42 Identity = 93/155 (60.00%), Postives = 116/155 (74.84%), Query Frame = 1
BLAST of Spo22907.1 vs. UniProtKB/TrEMBL
Match: C6SXR8_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G083300 PE=2 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 1.400e-39 Identity = 80/124 (64.52%), Postives = 102/124 (82.26%), Query Frame = 1
BLAST of Spo22907.1 vs. ExPASy Swiss-Prot
Match: Y2179_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2) HSP 1 Score: 73.9 bits (180), Expect = 1.600e-12 Identity = 47/139 (33.81%), Postives = 71/139 (51.08%), Query Frame = 1
BLAST of Spo22907.1 vs. ExPASy Swiss-Prot
Match: NPC2_YARLI (Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=NPC2 PE=3 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 1.400e-8 Identity = 35/114 (30.70%), Postives = 57/114 (50.00%), Query Frame = 1
BLAST of Spo22907.1 vs. ExPASy Swiss-Prot
Match: Y2107_DICDI (Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 OS=Dictyostelium discoideum GN=DDB_G0282107 PE=3 SV=1) HSP 1 Score: 53.5 bits (127), Expect = 2.300e-6 Identity = 36/123 (29.27%), Postives = 59/123 (47.97%), Query Frame = 1
BLAST of Spo22907.1 vs. TAIR (Arabidopsis)
Match: AT5G06480.1 (Immunoglobulin E-set superfamily protein) HSP 1 Score: 141.4 bits (355), Expect = 4.700e-34 Identity = 68/126 (53.97%), Postives = 89/126 (70.63%), Query Frame = 1
BLAST of Spo22907.1 vs. TAIR (Arabidopsis)
Match: AT3G44100.1 (MD-2-related lipid recognition domain-containing protein) HSP 1 Score: 136.7 bits (343), Expect = 1.200e-32 Identity = 72/124 (58.06%), Postives = 86/124 (69.35%), Query Frame = 1
BLAST of Spo22907.1 vs. TAIR (Arabidopsis)
Match: AT3G11780.2 (MD-2-related lipid recognition domain-containing protein / ML domain-containing protein) HSP 1 Score: 134.8 bits (338), Expect = 4.400e-32 Identity = 71/155 (45.81%), Postives = 95/155 (61.29%), Query Frame = 1
BLAST of Spo22907.1 vs. TAIR (Arabidopsis)
Match: AT2G16005.1 (MD-2-related lipid recognition domain-containing protein) HSP 1 Score: 53.1 bits (126), Expect = 1.700e-7 Identity = 40/119 (33.61%), Postives = 59/119 (49.58%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22907.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22907.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22907.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo22907.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 4
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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