Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TGGGACCAAATGAAAACTTAGAGAAAGGAATACGTAACGTATGGCTCTAATTATCTCCCACTTCCCCCTTTCTCTAACCTCAAAAACATCACCATCATCATTCACACCTTGCAATTCTTCTTCGATTTCACTACCCAAATCAAGGTTTCCTACCTCAACTGTTTCCCGTTATTGTGGAGCATCAACAGTTTCTCAAATGGACAGCGGACGGCCAAGATTCATGGATTTCCCCTACGCATCACCACCCATCAAAGATCTGATGATTGATTTGATATCAACGGTGGAGAGCAGCCTGGATTCATTGCTCCTACCATGTACCCTTCCACAGGATGTCCAGTACTTCCAAAACCAAAGTGGGACCGCTCATGCTTCCCTTCTTCTTCGCTCTGGTTCTCCTTCCTCCACGGTACACTCCACACTCTTCAATTCATTATTAGTAATGCTCTTTCTGGATATCTTAGTTATGGCTATTATAGACCAGTTGATGTGGTCATTCAGCTTGACAAAGGTAATTCCAGTGGCTACTCTAAAGTTTCAGGTTTGTAATAGTCTGGCTTCAAGTCCAACAAGTGTTATCCTATTCCAAAATATGGTTTATGCACCCGGGTGCACAATGTTCACTGTGCACTCTGTTTTTTTAATGAACATATAGTTCAGCTACAAAGAACATATTGTTCATAGTTAAAGAACGTATAGCCAATATACATATAGTTCAAATCCATAGAACATATAATTTAAATATTTCACTAGTACATGTACATTAAAATCATCCTCCACGTTCATTAGATTTTCGATAAATGTTCAACGGGATGCAGAATTAGCACTGTGCATCCGGGTGTATAATCCAAATTGCGGTCCTATTCTTGAATAGTTGAACTTAATTGAGACCACTTGTTATGTTGGAATTTCCCGTTTAAAAAAAAATTAAGGTTGGAATTTGGAAGTATTTCTGAATAGTCATAACATTTGTGTTTTCAAGTGGTTTTAGAATGTTTTAAAGTAATGTGAAAGTGGAGTTAAATGACATTATTTTAATTTGTTTGTCGAGGACAGAAATAATAAAGAATTGGTGCAAGAGAGAGAACACAAAAATATTGTTATAAGTGGCTTTCTTCTGGTCACCTTATTTCCCCTTATTTCAGGAAAATTAAGTTCAGTTAAGTTTAGATAAGTTCAGATAAGATAAATTCAGGAAAAATAAGGGTTACTAAGTTCAACTTATAACTAAAATAAGTTTTTGTTAAGGTTCAGTTAATTTCAGATAAGTTCAGATAAGATAAGTTTAAGAAAAATAAGGGAAAATCATGTGAATAGAACGCGTTCTAAGAGAAAGAGAAACAATAAAGAAATAATGGACACATGTCAAAATAAGAATTATTGCAATTATTCAGAAAAGGCTGTGATGCTAGTATTTGAAATGGTTGTGGATTGTGATGCTAGTATTCAGAAACGGAGAGAGTATTGTGTTACAATGTACACCTCCAATGTACAATGCCTTACAAGTTACATTTCAAAATACTTTTATTTGGTGACATAGGGGTTCCATGACTAACTAGGAAGTGTGAAGTAATTTCAAAAGAATTTGTTCGATCATTCTGGCTCAAATAGCATTGCAAATATACTTCAACATGCCACTATTGAACAAAGGTCCTTTTTTTTTTCTTCCTTCTGGTGTAGAGAGAGCCACAAATGGCTAAACGACAAATGGTGTAGAGACTGTAGACAAGATACGATCTCATGTTTTGGGTACCACCCCTCGATACTTTACTTACTAATCTAGTTGACACTTGACACCCACAATCAAAGGTCCTTCTAATTGGCTTTAAATTTTCTTAGTTACCACAATTATCATTGCTAAGTTAAATTTGCTGCAGTAGATACTAGATAGGGAAGTGTGGACTATTATTTTAGAGAATCCCAAAATAGAAAATGTGTTGAGAATGGAAAAAAAAGAAAGAGAGATTGACGAACCTATAAAATTGATGAGCTACTCCACCTATCACCAATTGGTTTTAGGATAGAGTTCCGTCACACTTATATGTGAACGATCAGTTTATCCAAATGTGACATTTGAAAGCGGGATGGAGAGAGTGGTAGTCTACATATTTGCGTATAAACTAAACCATCTATGTTATGTGACTACAAATTGTAGTTACCTATGTAAACCACTGGCCGTTTTTTCTGAAAAATTGAATGGAAATACTGCAAGTTCCACACCCATCTTTGCAAAAGTATTCTTAAGGTTAATCTGAATGAGTTAATGTCGGACTCACTAAGTTAAATAAGTACACTAATGGTCTTTTAATTATGAGATAATCTTCCTTTATTTTTTTTCTAGCATTCTCAACTCCTATGACAATTTATTGCAAACTTGATTGTGCAGATTGACTTCATTTTAGGATCATGGTTACATTGTGAACTACCAACAGGAGGAGCTTTAAACATCACAAGCTTTTCTTCATACATGAATAACTCAACCGATGCACCACACTTAGTAATTGAGTTCATCCAAAGTAGTCCAACATCTTTGGTTCTAATCCTCGATCTACCTCCTCGAAAGGACCTTATACTTCACCCCGAATATCTAAAAACCTTTTATGAAGATTCCGAGCTAGAAAAGCAAAGACAAGTACTCGATAAAATCCCTGAAGTTCAACCTTACGTCTCACCTTCACTCTACATTCGTTCAGTCTTCTCTCCTACTGCTATTGTGGTTAAAGTGGATACTTCCGAGAGTGGAGGAGATAAATTGGAGGAGATTTTGAGGGATGAAGTTAGTAATGTGGCAAAACAAGTGTTGGGGATATGGTTGGAGTTGTGTGTTTTAGGAGGAAAAAGAGATGTTGGAGATGATGAGAAGGTTTGGTTGAAGAAGAGGGATAGTTTGTTTAAGAGTAAGAGTATTGAGACTGATATAGGATCTACTTTGCCTCGTATGTTTGGTCAAGAAATTACTGATCGTGTTTTGGGAGTTCTGCAGGCATCACTGTAATTTCCACTAGCTAGTCAAGAACCTCTGATTTCGCAAAATTGTGTGGAGTATGTTAAATCTCCTTTTGGCTTTTGTGTAAAACTGTGAGAAGATTTAGCAAAAGAACATAACATTAAACATTAACATTTTTTTACTGGGTAAGAAACACGAATACTACATAACTAACACCTATCACAGGTTAACCAGTTAAGCTGCACATGTCTTCGCTTGAGCCACGTGGGCTACTCTCAAGTATTTTCCCAATTGATAGGGCTCGACATATCTTGGATCTTTTACCAAACTAG TGGGACCAAATGAAAACTTAGAGAAAGGAATACGTAACGTATGGCTCTAATTATCTCCCACTTCCCCCTTTCTCTAACCTCAAAAACATCACCATCATCATTCACACCTTGCAATTCTTCTTCGATTTCACTACCCAAATCAAGGTTTCCTACCTCAACTGTTTCCCGTTATTGTGGAGCATCAACAGTTTCTCAAATGGACAGCGGACGGCCAAGATTCATGGATTTCCCCTACGCATCACCACCCATCAAAGATCTGATGATTGATTTGATATCAACGGTGGAGAGCAGCCTGGATTCATTGCTCCTACCATGTACCCTTCCACAGGATGTCCAGTACTTCCAAAACCAAAGTGGGACCGCTCATGCTTCCCTTCTTCTTCGCTCTGGTTCTCCTTCCTCCACGATTGACTTCATTTTAGGATCATGGTTACATTGTGAACTACCAACAGGAGGAGCTTTAAACATCACAAGCTTTTCTTCATACATGAATAACTCAACCGATGCACCACACTTAGTAATTGAGTTCATCCAAAGTAGTCCAACATCTTTGGTTCTAATCCTCGATCTACCTCCTCGAAAGGACCTTATACTTCACCCCGAATATCTAAAAACCTTTTATGAAGATTCCGAGCTAGAAAAGCAAAGACAAGTACTCGATAAAATCCCTGAAGTTCAACCTTACGTCTCACCTTCACTCTACATTCGTTCAGTCTTCTCTCCTACTGCTATTGTGGTTAAAGTGGATACTTCCGAGAGTGGAGGAGATAAATTGGAGGAGATTTTGAGGGATGAAGTTAGTAATGTGGCAAAACAAGTGTTGGGGATATGGTTGGAGTTGTGTGTTTTAGGAGGAAAAAGAGATGTTGGAGATGATGAGAAGGTTTGGTTGAAGAAGAGGGATAGTTTGTTTAAGAGTAAGAGTATTGAGACTGATATAGGATCTACTTTGCCTCGTATGTTTGGTCAAGAAATTACTGATCGTGTTTTGGGAGTTCTGCAGGCATCACTGTAATTTCCACTAGCTAGTCAAGAACCTCTGATTTCGCAAAATTGTGTGGAGTATGTTAAATCTCCTTTTGGCTTTTGTGTAAAACTGTGAGAAGATTTAGCAAAAGAACATAACATTAAACATTAACATTTTTTTACTGGGTAAGAAACACGAATACTACATAACTAACACCTATCACAGGTTAACCAGTTAAGCTGCACATGTCTTCGCTTGAGCCACGTGGGCTACTCTCAAGTATTTTCCCAATTGATAGGGCTCGACATATCTTGGATCTTTTACCAAACTAG ATGGCTCTAATTATCTCCCACTTCCCCCTTTCTCTAACCTCAAAAACATCACCATCATCATTCACACCTTGCAATTCTTCTTCGATTTCACTACCCAAATCAAGGTTTCCTACCTCAACTGTTTCCCGTTATTGTGGAGCATCAACAGTTTCTCAAATGGACAGCGGACGGCCAAGATTCATGGATTTCCCCTACGCATCACCACCCATCAAAGATCTGATGATTGATTTGATATCAACGGTGGAGAGCAGCCTGGATTCATTGCTCCTACCATGTACCCTTCCACAGGATGTCCAGTACTTCCAAAACCAAAGTGGGACCGCTCATGCTTCCCTTCTTCTTCGCTCTGGTTCTCCTTCCTCCACGATTGACTTCATTTTAGGATCATGGTTACATTGTGAACTACCAACAGGAGGAGCTTTAAACATCACAAGCTTTTCTTCATACATGAATAACTCAACCGATGCACCACACTTAGTAATTGAGTTCATCCAAAGTAGTCCAACATCTTTGGTTCTAATCCTCGATCTACCTCCTCGAAAGGACCTTATACTTCACCCCGAATATCTAAAAACCTTTTATGAAGATTCCGAGCTAGAAAAGCAAAGACAAGTACTCGATAAAATCCCTGAAGTTCAACCTTACGTCTCACCTTCACTCTACATTCGTTCAGTCTTCTCTCCTACTGCTATTGTGGTTAAAGTGGATACTTCCGAGAGTGGAGGAGATAAATTGGAGGAGATTTTGAGGGATGAAGTTAGTAATGTGGCAAAACAAGTGTTGGGGATATGGTTGGAGTTGTGTGTTTTAGGAGGAAAAAGAGATGTTGGAGATGATGAGAAGGTTTGGTTGAAGAAGAGGGATAGTTTGTTTAAGAGTAAGAGTATTGAGACTGATATAGGATCTACTTTGCCTCGTATGTTTGGTCAAGAAATTACTGATCGTGTTTTGGGAGTTCTGCAGGCATCACTGTAA MALIISHFPLSLTSKTSPSSFTPCNSSSISLPKSRFPTSTVSRYCGASTVSQMDSGRPRFMDFPYASPPIKDLMIDLISTVESSLDSLLLPCTLPQDVQYFQNQSGTAHASLLLRSGSPSSTIDFILGSWLHCELPTGGALNITSFSSYMNNSTDAPHLVIEFIQSSPTSLVLILDLPPRKDLILHPEYLKTFYEDSELEKQRQVLDKIPEVQPYVSPSLYIRSVFSPTAIVVKVDTSESGGDKLEEILRDEVSNVAKQVLGIWLELCVLGGKRDVGDDEKVWLKKRDSLFKSKSIETDIGSTLPRMFGQEITDRVLGVLQASL Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22917.1 vs. NCBI nr
Match: gi|902095323|gb|KNA03403.1| (hypothetical protein SOVF_209560 [Spinacia oleracea]) HSP 1 Score: 633.6 bits (1633), Expect = 1.800e-178 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 1
BLAST of Spo22917.1 vs. NCBI nr
Match: gi|731373333|ref|XP_010666619.1| (PREDICTED: red chlorophyll catabolite reductase, chloroplastic [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 471.9 bits (1213), Expect = 9.200e-130 Identity = 241/321 (75.08%), Postives = 273/321 (85.05%), Query Frame = 1
BLAST of Spo22917.1 vs. NCBI nr
Match: gi|1009145038|ref|XP_015890117.1| (PREDICTED: red chlorophyll catabolite reductase, chloroplastic-like [Ziziphus jujuba]) HSP 1 Score: 355.9 bits (912), Expect = 7.400e-95 Identity = 189/315 (60.00%), Postives = 229/315 (72.70%), Query Frame = 1
BLAST of Spo22917.1 vs. NCBI nr
Match: gi|225438706|ref|XP_002277744.1| (PREDICTED: red chlorophyll catabolite reductase [Vitis vinifera]) HSP 1 Score: 355.1 bits (910), Expect = 1.300e-94 Identity = 185/321 (57.63%), Postives = 239/321 (74.45%), Query Frame = 1
BLAST of Spo22917.1 vs. NCBI nr
Match: gi|568824435|ref|XP_006466607.1| (PREDICTED: red chlorophyll catabolite reductase, chloroplastic [Citrus sinensis]) HSP 1 Score: 352.8 bits (904), Expect = 6.300e-94 Identity = 184/317 (58.04%), Postives = 236/317 (74.45%), Query Frame = 1
BLAST of Spo22917.1 vs. UniProtKB/TrEMBL
Match: A0A0K9Q9N6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_209560 PE=4 SV=1) HSP 1 Score: 633.6 bits (1633), Expect = 1.300e-178 Identity = 324/324 (100.00%), Postives = 324/324 (100.00%), Query Frame = 1
BLAST of Spo22917.1 vs. UniProtKB/TrEMBL
Match: A0A0J8DYK7_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_003260 PE=4 SV=1) HSP 1 Score: 471.9 bits (1213), Expect = 6.400e-130 Identity = 241/321 (75.08%), Postives = 273/321 (85.05%), Query Frame = 1
BLAST of Spo22917.1 vs. UniProtKB/TrEMBL
Match: D7SVY1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0031g00680 PE=4 SV=1) HSP 1 Score: 355.1 bits (910), Expect = 8.800e-95 Identity = 185/321 (57.63%), Postives = 239/321 (74.45%), Query Frame = 1
BLAST of Spo22917.1 vs. UniProtKB/TrEMBL
Match: V4RWD5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10026041mg PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 4.100e-92 Identity = 181/317 (57.10%), Postives = 235/317 (74.13%), Query Frame = 1
BLAST of Spo22917.1 vs. UniProtKB/TrEMBL
Match: A0A067GHQ3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g020001mg PE=4 SV=1) HSP 1 Score: 346.3 bits (887), Expect = 4.100e-92 Identity = 181/317 (57.10%), Postives = 235/317 (74.13%), Query Frame = 1
BLAST of Spo22917.1 vs. ExPASy Swiss-Prot
Match: RCCR_ARATH (Red chlorophyll catabolite reductase, chloroplastic OS=Arabidopsis thaliana GN=RCCR PE=1 SV=2) HSP 1 Score: 308.9 bits (790), Expect = 6.500e-83 Identity = 168/323 (52.01%), Postives = 224/323 (69.35%), Query Frame = 1
BLAST of Spo22917.1 vs. ExPASy Swiss-Prot
Match: RCCR_HORVU (Red chlorophyll catabolite reductase (Fragment) OS=Hordeum vulgare GN=rccR PE=1 SV=1) HSP 1 Score: 202.6 bits (514), Expect = 6.600e-51 Identity = 94/199 (47.24%), Postives = 146/199 (73.37%), Query Frame = 1
BLAST of Spo22917.1 vs. TAIR (Arabidopsis)
Match: AT4G37000.1 (accelerated cell death 2 (ACD2)) HSP 1 Score: 308.9 bits (790), Expect = 3.700e-84 Identity = 168/323 (52.01%), Postives = 224/323 (69.35%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22917.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22917.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22917.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 2
BLAST of Spo22917.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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