Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GTNGGGTAGTAGGTAAGTGTGAGAAATAATATAATATTGGTAAAGATTTCCATTTATAGAAGCGGTGTAAGTATTAAAAGACGGTCCAAAAAGAAAAGCGGTGCAAGTATTAAGGGACGGAGGGAGTATTATAAATATATGTTACATAAATGACATATTTGAGAACGAAATTGATTTGAACAGGTTCAAAACTACCCCCAATAGGCAAATATCCCACCACACCATCATTACGAGAGCTAATTTTATGGGATTGTGTAATTGCGTAGGCAAAAGTCCGTAAAACTATAGAAGGAATAGAAAAAAGAAATGAAAATGAATTGAAAAATCAGAAGTAAACCCGTAAAAAACGGAGCTAGATCTTGATCCGAGTTTGAAGGAGTGGGTGGGTTAATCCGGTCTCACAGCAATCATCCATTTTTCCAATGCTTGCGTCTCTTTCTCTCTCCTCGCACATGTGTTACGGTTGCTAATGCTTTTCTTGCCCCGCTTAACTGCCTTTTCTCTCCTCCTATAAAATTCGATTAACCCAAATTAAGAAAAACTACTTCCCTGGACGTTTCAACAAATGCAGTTCCTCCTCATTGGCAGTTGATTTCAAGGTTCGTCTTTTCTCTTACTCTTTCAACTGGGTTATTCAATGCATTTTTGTTGTATCAATTGTTTTGATTGATCAGGTTACATGATGTGCTTCAAGTTTCTAGCTTTGTGAAATGATGCTTAGATTTGATGAACTTAGACCCAGATTGCTATTTTGGTTAGTTTGGATTAAAATTGAAATCCCAATTCATTGAATTTTCTGGGTATTTGAGTGTTTGCTTGTTTGGACTTTTTATCTTTGTCATTTTCAAAATTTCAATTCTGTTTGCTTTCAATTGATGATTGAATTAATGAGTATTGTCTTATTGGAAATCTGCCAAGCCAGTGAATCATAGATTGGTATTTATGGTGATGATCTTTTTCCAATTACCTTTAGCAAGTCAAATGGTTAAAGAGCAGGGAAAATTGGATAATAGTTGGTTAATTTTATTTACTGCAACAGTGATCGGTTTGAATTAGGTTAGCAAGTAGCAATTTTGCATAATGTTGTCTTTTCCAGTGCTGTTGAAAAGTGATTTCTGTATGTGTTTGTGTGTCTGCATTGTGTTATATACTTATATGCGATTCACAGTCATGTCAGCCAATTATTGAATCCGGGTTTTAATGTTCGTCTGGTTATGGATCCAAGTATGAGACAACTTGATTTGGTGCCTGCATTGTGTTGGAGTATATGCACCTCATATTCTCATAGATTGACCATTGCCTCTTTCGAATCCCATAGCTGGTATACTAGGGATTTTTGTTGGTTTTTATCCAGAATATTGCTGGTTTCTTATTCAGATGTCGCCATGCCATTGCATGATAACTACATCCATCATCGGGATATCAACAAATGCTTGCAACAGTTCTTTGAAATGGACATGTTTCACATAGGGGTATTATTTGTTGGTGTCCAGTAGGTTGTTCCTGAATAAATGACCTGTTCATGGTACACAGCTTATGTGACATTTTAGGAGTATTTTGTTGTTAACATTATCAATCTTATATTCCACGAATAACATCCAGCAGAGAGATATTTGTGCTTTATTAAACAAAAGAGATGAGAGAGGGTCTTTTATTGGCCTAGATGATAAATTGCAGCTGCAGATTTATTAGTGGATTAAAATGGTTGTGGTTTTCCGACTTTGTATATTTTACTGTTGTCAATTTTGTTATTCTAATTGTCAGCATCTTGATCCTTGGTTCGAAATTGNATATTTTACTGTTGTCAATTTTGTTATTCTAATTGTCAGCATCTTGATCCTTGGTTCGAAATTGACAGGGGATCAGGCTAAAATTATTGCCGAGAAGTGAATGAATTAGTAATTTGAGAAACATGACTACTCTTTTTCCTGTTTGGATATAAGGTTTCCGCAGAAAATCAGCACAAATAGACTTAGCAAACTATTGCTCTTTTATCCATCTCCATCCATTATTCTGTTACATATGACAAGAAACTTCTTGTTTTTAATTTTAGTCTATTACTTAGGTTAAATGTTCTGCATTTTCAGGTAAACAAAAAAGTGGGAAAGGATCTGTCTGTTTTTACCCTTGTACTTATTTCAGATCTGTGCTTAGTTTGCGGAAGGAAACTTTTAGCTGGAGCTAATTTTTATTTTTTTGCTAACCTAAGATGGTGAACTTTTGTGCTAGTTGCATACCCTATAAGGTTGAACTCAGCAACTCACATTTTACATCCGTTGCAACTGCTATCATCAGGTCTGAACTATCTGTTTCTGATGCAAAATCCCTTGCTTTTCTGGTTTTGCCGGTGTTCGAACACTTTAAGTTCAGATGAGAACAGCCCCAATGTGTTACTCGATCTTGCGAGTCCCTAGATTCAGAGTTTGCTCTTTGGTTAATGCATGGTGGGAAGGCTCTGACTCTGTACGTCCAACATGTAGAAACGTATCCAATTTTAGGGTACTAAATTCCAGTGTTGGTGGTCGTGAAAGAAATGGAAGTTGGAGTCGGAGACCCTTAACAACTGCAGGTGAAGGAATTAGCAAAAACTCCTTGAGCAGTGCAGGCAATGTCAGGCTTGACTTATCAAATAAAGTAATTGCGAATACAACCACAGACTTGAAAAAAAGCGTAACTGATGGTAGCAATGCAGATATTCGACAACTGATAGCTGAAAATAAGGATTTGGCTAGCCTTGCAACTTTTATTGTCTTTGATCTTGAGACAACTGGCCTTGACAGAAAATCTGAAAGAATTATCGAGATTGCGCTTATGGACCTCGGTGGTGATGAACACAACACTTTTAGCACTCTAGTTAATCCTGATCGTAATGTCCTAAATTCAGACATCCATAATATTAAAACCGAGATGGTCAGAAATCGTGATGTTCCAAGGTATTTCAACTAGTATCTTCTACAAACTTGATTTTCACAAGTACATTTTGTTATTTGTGGTGTACCACTGTACAAAAGATTTGGCCTGCGCTTTGTTAACTAGTTACTGCTTTTTTAATATCTTCATACCATCTTAGAATAGATAGGAAATGTGTGATTGGCAGTTAATTCTCCCCCTGCCCCTGTAACTGAAGTTTGTCATGATAGTCACAAACTTAATTATGTAAGAGAATCTTACACCATGCGTAAATTTTCTACATTCAGTGTCATTCCTCACTCTTTCAGTCTCTTTCTGTTCCCTCTTTCCTTGAAATTTCCTCTTTCAAACACGCTATTAGCCTGATTTGTTTATTTTTCTTGTTGTTTATCTCATTACATAGCTTGAGTAGGATAATTTGAACTAATCCTCATGAATTTTAGATGACTATACCGGTAGAGTGATTTTGACGTGTTTTGGTTTGGATCTGATGTAGGATGGACCAACTTATTCCAATACTGCTACAGTATGTGAGAAGCCGTCAGAAGCCAGGGGGATATGTGGTGTTAGTCGCACATAACGCTAGAAGTTTTGACGTTCCGTTCCTGGTTAATGCATTTAAACGACATGGTTTTGAAATCCCTTCAAACTGGTTTTTTTTGGATACTCTTCCTTTAGGGCGTCAAGTACTGAAAGCCGCAGGTGTTGACTCTTTCTTTTCTTTATCTCCCTCCCCCCTCTTTTTTGGCTGAGTTATTGTCATCTTAAGTTGTCCTTTTGGTTGTCATCAGGAGTAACAACTGGGTGCCGGTTGCAAGGACTTCGTGAGCATTATGAAATCCAATTAGAAGGTCCAGAGCACAGAGCCATGTCAGACGTGCTTGTTTTATCACTGGTGTTTCAGAGAATTACCTTTGATCTCAAGCTTCCAATCCACGAGCTTGTGCAGAAGGCTTTTACTGCTGATGAATTAACAAGTAGCAGCGCGAAGAATAGAAGTGCAAAGAATAGAAGTCCGAAGAAGAAAAAAGACTCAAGCTAGCTAGTTCTGTTCTTCCTTGTTGTCATTACTACTGTATCATCCATTGTTGTTAATTTATGTGATTTAATTCTTCTAATTTTAGGTGAATCACTCATTGTAATCCCATTCTCTTGGGCATTTATAGAAATGAAAGCAAAATTTTAG GTNGGGTAGTAGGTAAGTGTGAGAAATAATATAATATTGGTAAAGATTTCCATTTATAGAAGCGGTGTAAGTATTAAAAGACGGTCCAAAAAGAAAAGCGGTGCAAGTATTAAGGGACGGAGGGAGTATTATAAATATATGTTACATAAATGACATATTTGAGAACGAAATTGATTTGAACAGGTTCAAAACTACCCCCAATAGGCAAATATCCCACCACACCATCATTACGAGAGCTAATTTTATGGGATTGTGTAATTGCGTAGGCAAAAGTCCGTAAAACTATAGAAGGAATAGAAAAAAGAAATGAAAATGAATTGAAAAATCAGAAGTAAACCCGTAAAAAACGGAGCTAGATCTTGATCCGAGTTTGAAGGAGTGGGTGGGTTAATCCGGTCTCACAGCAATCATCCATTTTTCCAATGCTTGCGTCTCTTTCTCTCTCCTCGCACATGTGTTACGGTTGCTAATGCTTTTCTTGCCCCGCTTAACTGCCTTTTCTCTCCTCCTATAAAATTCGATTAACCCAAATTAAGAAAAACTACTTCCCTGGACGTTTCAACAAATGCAGTTCCTCCTCATTGGCAGTTGATTTCAAGGTCTGAACTATCTGTTTCTGATGCAAAATCCCTTGCTTTTCTGGTTTTGCCGGTGTTCGAACACTTTAAGTTCAGATGAGAACAGCCCCAATGTGTTACTCGATCTTGCGAGTCCCTAGATTCAGAGTTTGCTCTTTGGTTAATGCATGGTGGGAAGGCTCTGACTCTGTACGTCCAACATGTAGAAACGTATCCAATTTTAGGGTACTAAATTCCAGTGTTGGTGGTCGTGAAAGAAATGGAAGTTGGAGTCGGAGACCCTTAACAACTGCAGGTGAAGGAATTAGCAAAAACTCCTTGAGCAGTGCAGGCAATGTCAGGCTTGACTTATCAAATAAAGTAATTGCGAATACAACCACAGACTTGAAAAAAAGCGTAACTGATGGTAGCAATGCAGATATTCGACAACTGATAGCTGAAAATAAGGATTTGGCTAGCCTTGCAACTTTTATTGTCTTTGATCTTGAGACAACTGGCCTTGACAGAAAATCTGAAAGAATTATCGAGATTGCGCTTATGGACCTCGGTGGTGATGAACACAACACTTTTAGCACTCTAGTTAATCCTGATCGTAATGTCCTAAATTCAGACATCCATAATATTAAAACCGAGATGGTCAGAAATCGTGATGTTCCAAGGATGGACCAACTTATTCCAATACTGCTACAGTATGTGAGAAGCCGTCAGAAGCCAGGGGGATATGTGGTGTTAGTCGCACATAACGCTAGAAGTTTTGACGTTCCGTTCCTGGTTAATGCATTTAAACGACATGGTTTTGAAATCCCTTCAAACTGGTTTTTTTTGGATACTCTTCCTTTAGGGCGTCAAGTACTGAAAGCCGCAGGAGTAACAACTGGGTGCCGGTTGCAAGGACTTCGTGAGCATTATGAAATCCAATTAGAAGGTCCAGAGCACAGAGCCATGTCAGACGTGCTTGTTTTATCACTGGTGTTTCAGAGAATTACCTTTGATCTCAAGCTTCCAATCCACGAGCTTGTGCAGAAGGCTTTTACTGCTGATGAATTAACAAGTAGCAGCGCGAAGAATAGAAGTGCAAAGAATAGAAGTCCGAAGAAGAAAAAAGACTCAAGCTAGCTAGTTCTGTTCTTCCTTGTTGTCATTACTACTGTATCATCCATTGTTGTTAATTTATGTGATTTAATTCTTCTAATTTTAGGTGAATCACTCATTGTAATCCCATTCTCTTGGGCATTTATAGAAATGAAAGCAAAATTTTAG ATGAGAACAGCCCCAATGTGTTACTCGATCTTGCGAGTCCCTAGATTCAGAGTTTGCTCTTTGGTTAATGCATGGTGGGAAGGCTCTGACTCTGTACGTCCAACATGTAGAAACGTATCCAATTTTAGGGTACTAAATTCCAGTGTTGGTGGTCGTGAAAGAAATGGAAGTTGGAGTCGGAGACCCTTAACAACTGCAGGTGAAGGAATTAGCAAAAACTCCTTGAGCAGTGCAGGCAATGTCAGGCTTGACTTATCAAATAAAGTAATTGCGAATACAACCACAGACTTGAAAAAAAGCGTAACTGATGGTAGCAATGCAGATATTCGACAACTGATAGCTGAAAATAAGGATTTGGCTAGCCTTGCAACTTTTATTGTCTTTGATCTTGAGACAACTGGCCTTGACAGAAAATCTGAAAGAATTATCGAGATTGCGCTTATGGACCTCGGTGGTGATGAACACAACACTTTTAGCACTCTAGTTAATCCTGATCGTAATGTCCTAAATTCAGACATCCATAATATTAAAACCGAGATGGTCAGAAATCGTGATGTTCCAAGGATGGACCAACTTATTCCAATACTGCTACAGTATGTGAGAAGCCGTCAGAAGCCAGGGGGATATGTGGTGTTAGTCGCACATAACGCTAGAAGTTTTGACGTTCCGTTCCTGGTTAATGCATTTAAACGACATGGTTTTGAAATCCCTTCAAACTGGTTTTTTTTGGATACTCTTCCTTTAGGGCGTCAAGTACTGAAAGCCGCAGGAGTAACAACTGGGTGCCGGTTGCAAGGACTTCGTGAGCATTATGAAATCCAATTAGAAGGTCCAGAGCACAGAGCCATGTCAGACGTGCTTGTTTTATCACTGGTGTTTCAGAGAATTACCTTTGATCTCAAGCTTCCAATCCACGAGCTTGTGCAGAAGGCTTTTACTGCTGATGAATTAACAAGTAGCAGCGCGAAGAATAGAAGTGCAAAGAATAGAAGTCCGAAGAAGAAAAAAGACTCAAGCTAG MRTAPMCYSILRVPRFRVCSLVNAWWEGSDSVRPTCRNVSNFRVLNSSVGGRERNGSWSRRPLTTAGEGISKNSLSSAGNVRLDLSNKVIANTTTDLKKSVTDGSNADIRQLIAENKDLASLATFIVFDLETTGLDRKSERIIEIALMDLGGDEHNTFSTLVNPDRNVLNSDIHNIKTEMVRNRDVPRMDQLIPILLQYVRSRQKPGGYVVLVAHNARSFDVPFLVNAFKRHGFEIPSNWFFLDTLPLGRQVLKAAGVTTGCRLQGLREHYEIQLEGPEHRAMSDVLVLSLVFQRITFDLKLPIHELVQKAFTADELTSSSAKNRSAKNRSPKKKKDSS Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo22919.1 vs. NCBI nr
Match: gi|902188288|gb|KNA11098.1| (hypothetical protein SOVF_138230 [Spinacia oleracea]) HSP 1 Score: 656.4 bits (1692), Expect = 2.800e-185 Identity = 335/339 (98.82%), Postives = 336/339 (99.12%), Query Frame = 1
BLAST of Spo22919.1 vs. NCBI nr
Match: gi|731326698|ref|XP_010674150.1| (PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 415.2 bits (1066), Expect = 1.100e-112 Identity = 227/348 (65.23%), Postives = 274/348 (78.74%), Query Frame = 1
BLAST of Spo22919.1 vs. NCBI nr
Match: gi|566168899|ref|XP_006382426.1| (hypothetical protein POPTR_0005s02060g [Populus trichocarpa]) HSP 1 Score: 335.9 bits (860), Expect = 8.300e-89 Identity = 189/335 (56.42%), Postives = 231/335 (68.96%), Query Frame = 1
BLAST of Spo22919.1 vs. NCBI nr
Match: gi|743883068|ref|XP_011036925.1| (PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Populus euphratica]) HSP 1 Score: 324.3 bits (830), Expect = 2.500e-85 Identity = 186/337 (55.19%), Postives = 229/337 (67.95%), Query Frame = 1
BLAST of Spo22919.1 vs. NCBI nr
Match: gi|255542840|ref|XP_002512483.1| (PREDICTED: exonuclease DPD1, chloroplastic/mitochondrial [Ricinus communis]) HSP 1 Score: 311.6 bits (797), Expect = 1.700e-81 Identity = 173/332 (52.11%), Postives = 223/332 (67.17%), Query Frame = 1
BLAST of Spo22919.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QWN4_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_138230 PE=4 SV=1) HSP 1 Score: 656.4 bits (1692), Expect = 1.900e-185 Identity = 335/339 (98.82%), Postives = 336/339 (99.12%), Query Frame = 1
BLAST of Spo22919.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CJE1_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_4g076570 PE=4 SV=1) HSP 1 Score: 415.2 bits (1066), Expect = 7.500e-113 Identity = 227/348 (65.23%), Postives = 274/348 (78.74%), Query Frame = 1
BLAST of Spo22919.1 vs. UniProtKB/TrEMBL
Match: U5G9K5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s02060g PE=4 SV=1) HSP 1 Score: 335.9 bits (860), Expect = 5.800e-89 Identity = 189/335 (56.42%), Postives = 231/335 (68.96%), Query Frame = 1
BLAST of Spo22919.1 vs. UniProtKB/TrEMBL
Match: B9RFG4_RICCO (Exonuclease, putative OS=Ricinus communis GN=RCOM_1434480 PE=4 SV=1) HSP 1 Score: 311.6 bits (797), Expect = 1.200e-81 Identity = 173/332 (52.11%), Postives = 223/332 (67.17%), Query Frame = 1
BLAST of Spo22919.1 vs. UniProtKB/TrEMBL
Match: A0A067JTU0_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23253 PE=4 SV=1) HSP 1 Score: 306.2 bits (783), Expect = 4.900e-80 Identity = 174/337 (51.63%), Postives = 229/337 (67.95%), Query Frame = 1
BLAST of Spo22919.1 vs. ExPASy Swiss-Prot
Match: DPD1_ARATH (Exonuclease DPD1, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=DPD1 PE=1 SV=1) HSP 1 Score: 246.5 bits (628), Expect = 4.100e-64 Identity = 145/332 (43.67%), Postives = 201/332 (60.54%), Query Frame = 1
BLAST of Spo22919.1 vs. ExPASy Swiss-Prot
Match: DPO3_CALS4 (DNA polymerase III PolC-type OS=Caldanaerobacter subterraneus subsp. tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=polC PE=3 SV=1) HSP 1 Score: 72.0 bits (175), Expect = 1.400e-11 Identity = 55/172 (31.98%), Postives = 91/172 (52.91%), Query Frame = 1
BLAST of Spo22919.1 vs. ExPASy Swiss-Prot
Match: DPO3_CLOPE (DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13 / Type A) GN=polC PE=3 SV=1) HSP 1 Score: 68.6 bits (166), Expect = 1.500e-10 Identity = 54/164 (32.93%), Postives = 89/164 (54.27%), Query Frame = 1
BLAST of Spo22919.1 vs. ExPASy Swiss-Prot
Match: DPO3_OCEIH (DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3 SV=1) HSP 1 Score: 68.2 bits (165), Expect = 2.000e-10 Identity = 66/194 (34.02%), Postives = 97/194 (50.00%), Query Frame = 1
BLAST of Spo22919.1 vs. ExPASy Swiss-Prot
Match: DPO3_STAEQ (DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=polC PE=3 SV=2) HSP 1 Score: 67.8 bits (164), Expect = 2.600e-10 Identity = 55/182 (30.22%), Postives = 95/182 (52.20%), Query Frame = 1
BLAST of Spo22919.1 vs. TAIR (Arabidopsis)
Match: AT5G26940.1 (Polynucleotidyl transferase, ribonuclease H-like superfamily protein) HSP 1 Score: 246.5 bits (628), Expect = 2.300e-65 Identity = 145/332 (43.67%), Postives = 201/332 (60.54%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo22919.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo22919.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo22919.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo22919.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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