Spo23042 (gene)

Overview
NameSpo23042
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionNOP56-like pre RNA processing ribonucleoprotein
LocationSuper_scaffold_45 : 1092394 .. 1096668 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexonthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAGTGTGGCCTTTCTTCTAGCTTTTTCCTGCTTTCCTTTTCTTTTCCTTTGTACTTCTTCTATCCGAGTTGTTACCTTCGCCCATCCCCTATGGTGGATTTTTTTACCCGATCTTTGTTTCCTTCGTAGTATTACATATTTTACTTTTCTAGGGTTTTGATTCTCGGAAGATATCAATAGAAAATCAAACTAAGATCTCAATATAAAGAGTTTAAGTGTACTATCTTTGGGAGGTTCTCCCTATTGTCACTTTTCTCGGTGGTCAGGTATGTACTGATTTTCTTTCTCTCTCTTTCTCCTTCCCAATTTTCAATTCGTAATTTTTTCAGTTGCATCTGAAATTCGATTGTTGAATATTGTATGATTTTTCAGTTTGGAAAAATCTTGTGTTTTTATGGGTATTGTTGGCTGTTTCTTCATAGAGGATCTGATCAAGCTTCTAAGTTGCCCGGTTTTGCACCTCTCCTAATCCCCTTTTCTCTCTAATCACAGGTACATTTATTGCCTTTCAAATTTATTGGTATTAGACTTCAAAATATTGAGTTTCATGTCGACTTTATGAATTTGGTTGTCTGGCCATTTTAACTTGATAACTTATTATTGCCATTTGTGGGATTTTTTGTGGGTTTTTGAGATATTTTCCTTTTATTTTATTATTGTTTAGAGAAACATTTAAAATTGGAAATCTGTTTAGGAATTGAATTAGGGTGGTTAATTTATTAGAGTCATACCAGTTATTGTGTTTTGTTATAGGTACCCTCTTTTGTTACTATTCTTATTTTATTAACCAGTGAACTTGACCTTTCGAAATTCTTCTGGTAGTCAAGATGAAAGCATTCGACAAATTTGAAAATACATTAGACGCAGCTACTACTGATCGACAGCAAGCCTGGCAAAGGATTGAGAAAATTCTTGAAAGCACACTGCTCCGGCAACATATTAGTTGTTGCTGATTCTAAACTTGGATATGCAATCAAGGAGAATCTGGTTGGTGTACATATAAATTTGACATATTTTATTTCTTTATGCTTGTGGTTTCATCTTCTAATATAAACTGTTTTATGGCCCTGTGCTGCAGCAAATTGACTGTGTTCACAATAATGCTATGATGGAGCTGATGAGAGGGGTAAGAAGTCAGTTGACTGAACTCATCTCTGGCTTTGGAGCTCAAGAACTTGTCCAATTAGCTTAGGTCTATCTCACAGCTTATCGAGATACAAGTTGAAGTTCAGTCCTGGTAAGGTCAATGATATCGACAAATTACTCTTTCATGTTTCATATTTCCTTTCTAATCCTGTACCTAATGTTTATGCAAGTAGACACTATGATTAATCACGCCATTGTATTGTTGGATGATCTTGACAAAGATCTTAATACAGAATGGTATGCCTGACATTTTCCGGAGCTTGTAAAGATTTTGCAAGACATTATAGTCTATGCCAAGACTATGAAGTTGATGTTGAATCGTGTTACTGCTGCGAAGTTGACTTTCTGTGAGGTAGACACCTCTTCATAGAATTTATAATCATCTTCATATGTCATTAGAAGCTTTGAAGATTAATGGAAATAGTAAGTAATGGCTTTGAAGATTTGTGGGGAAATAATTAGAAGCTTTGAAGATTAATCTATTAGATTTGTTTGCCAATTGTCCTTCTTGGATTTAATAAGTAATATCAAGGTTAAATGTTTACATCCGTGTTTCAGAGCAGCTAAACAATGTTTTATGTGTAACTTCGATTAGGGTTTACAATATCGATCATTTGATAAATGTTCAAGATGGGGTGCTCACTGCAGTCTTATTGTCAGTTGCCACATTGTTGTAAGAATATTTTTTAGTTTGTGCTGCCTTGATCTTGTGGCCTACTTAAGTTAAAAATAGATGCTTAAAGTAGATTATACTTCCAATTCTTCATGAATTTTAACATTATGCATTGTTTATGCATCTTCAATATTGAACTGGATAGGATAATGGAAAATAATTAGAAGCTTTGAAGATTAATCTACTCTATATGTCTGCCAATTGTGATTCTTGGATTTAATAAGTAATGTCAAGGTCAAATGTTTACATTTGATCATCGAAAGGTCAAATTGGGTTAAATAATTAGAAGCTTTGAAGATTAATCTACTACATATGTCTACTACTCTCTCTTGATGTTGAGCTCATTTCTAATGTTTAAAGTCTAAACTCTGATGATAGGCCGATAGCTGATAATTTTTTCGTTTGGGCATTAAATCTTTACTAGCACCCTTTTGATTACTTCATTATTGTGATTTAATCATCTTTATCAACTATTTCGAACACTCTTTTACACTGTACACTTCCCTTTACATGTGAACATTTGTTTATGTTTCTTCCGGATTATCAAAGTTTTTAATTGAATTAGTTTGAATATTTAGGTATTGAATATGGACTATGGAGAGGAAAGTTCCGAACTCTCTCTGCTTTCAACTACATGTTCCCACCATAAACACATTTTTGAGGTTTGTATAATGTCTTCTTAACATCCTGACTTTTTAATCATGTTATATTGACCTCCTTAAAACAGGTTAGTTGCTTGTAGTTTCTTCTTCCCACGAGAGATATATCCATGCAACTTAAGCTACTTGCAAGGTATATTTTAAATTCTGATCATAAGCAGTAACTTATCCAACAAAGTATTTCAGACTGCTATCCAAGGCAGTATTTGTTACTGCCAGTCAATTTTAGTTAATTGGATAATATTGCCCTGACTACAGTTGACAATGCAGCAATGAATTGGAAACGAGAAAGGTCATTACCCTTTATCATTTAGTACTAAGTACAGCCTAATTCTTAAACTAAAACTTGCAAAATTCTTTTTCAAATTGCAGGAACGTTTGGTTGACTTGGCAAATTATCAAGCAGAACCGGACCTTGTACAATTCTGCGTTCTAAGATTCCTCCCTTATTGAGTTATTGTTGCTTATGCAGTATTTCTTGCTATATGGACTCTTGATCAATCTGATTATCCATGATCAATATATTTTTCTTTACATTTGTGTTTTTTTTTATTACTAAACATTTACCCTGCTAACTTATCTGTTGAAGAATCCAACTTTAGTGCATTATACTTATATAAGGCCACAGAGCTCAAAGTTTTAGTAACTACCTGACAAGGTTTGCAATTAATTACAAGTAATTGCACACTGAAAGCAATTCACGAGAAGTACCTTCATGAAAAGTGATCCGCATGAAGAAGTCTTTTGATTAACTTTGCTGCTTGTTTACTTTCTATTGGTGAAATGGTTTTAGTCCTTGATTTTCTTTTATGAGCATTATTACGACATCGTAGATTAGTTTCTTTGCTTGATTACTTACTATTGGTGCAAATGGTTTCAGTCCTTGATTTTTTTTCTTATGAGCATTATTGTGTACCACTACTAAGGTTTCTAACATTAGCCCAGGGACGTGAAAGAAGGAAAGTCTCAAAATCCGCACCAAACAAGTTCTTATCAAGCTTGGACAACATCTCTCTCCGAGTGTAATGTCTTGTAGTGATGTCGTCGCCTTAAGCATTTGGATGATGCCGTCGAAGAATGAGTGATTTCATATATCTCTCTTGTCTTGTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGTTGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTACATTATTTCTCACTCCACCCCTATTAACCCACCTATCCCCTACTTCATACAAAAAATAATTAAAAATTCAAACCCCTACTCTCCCCCAACCCCATCTCTTAACCCACCTCCCACTAACTACATTAAAATAATATCCCACTATCAACTACTACCTATTAAATTAAATAAGTTAATTCAAATCCCTTAAACTCTGTGGCGGTCAAACCGGGTCGAGTATTCCGCGACGGAGGGAGTATACACCTTTTAGCTTGCTAATGTGTTTTCGATTTGTTTGTGGCACCTTCAATATGTAGTTCTAAATAGTTTCGTCTTACATGTCACGGAGTATGTGTAAATCTAACATTAACATACTCCGTGACATTTAGCATGTTTTATATTTTCCGTATCTCTTGCATTTACTATAATATTGTAAATATTCTTTCACGTAACATTTACGAAACAAATTTTTATAACTTGGGGATTGCGCACAATTGCCATTTAGCTAACCGTAAATGCTTGAGCAACAAGACGCCAAAAAATTGGACCTGATTGTAGTAATTACCTCGTTGCCCGAGCAATTCACAACCTCTTCTTCGCCAACAACCGC

mRNA sequence

ATGGCGAGTGTGGCCTTTCTTCTAGCTTTTTCCTGCTTTCCTTTTCTTTTCCTTTGTACTTCTTCTATCCGAGTTGTTACCTTCGCCCATCCCCTATGTTTGGAAAAATCTTGTGTTTTTATGGGTATTGTTGGCTGTTTCTTCATAGAGGATCTGATCAAGCTTCTAAGTTGCCCGACGCAGCTACTACTGATCGACAGCAAGCCTGGCAAAGGATTGAGAAAATTCTTGAAAGCACACTGCTCCGGCAACATATTAGTTGTTGCTGATTCTAAACTTGGATATGCAATCAAGGAGAATCTGCAAATTGACTGTGTTCACAATAATGCTATGATGGAGCTGATGAGAGGGATTTTGCAAGACATTATAGTCTATGCCAAGACTATGAAGTTGATGTTGAATCGTGTTACTGCTGCGAAGTTGACTTTCTGTGAGGTATTGAATATGGACTATGGAGAGGAAAGTTCCGAACTCTCTCTGCTTTCAACTACATGTTCCCACCATAAACACATTTTTGAGGTTTGTATAATGTCTTCTTAACATCCTGACTTTTTAATCATGTTATATTGACCTCCTTAAAACAGGTTAGTTGCTTGTAGTTTCTTCTTCCCACGAGAGATATATCCATGCAACTTAAGCTACTTGCAAGGTATATTTTAAATTCTGATCATAAGCAGTAACTTATCCAACAAAGTATTTCAGACTGCTATCCAAGGCAGTATTTGTTACTGCCAGTCAATTTTAGTTAATTGGATAATATTGCCCTGACTACAGTTGACAATGCAGCAATGAATTGGAAACGAGAAAGGAACGTTTGGTTGACTTGGCAAATTATCAAGCAGAACCGGACCTTGTACAATTCTGCGTTCTAAGATTCCTCCCTTATTGAGTTATTGTTGCTTATGCAGTATTTCTTGCTATATGGACTCTTGATCAATCTGATTATCCATGATCAATATATTTTTCTTTACATTTGTGTTTTTTTTTATTACTAAACATTTACCCTGCTAACTTATCTGTTGAAGAATCCAACTTTAGTGCATTATACTTATATAAGGCCACAGAGCTCAAAGTTTTAGTAACTACCTGACAAGGTTTGCAATTAATTACAAGTAATTGCACACTGAAAGCAATTCACGAGAAGTACCTTCATGAAAAGTGATCCGCATGAAGAAGTCTTTTGATTAACTTTGCTGCTTGTTTACTTTCTATTGGTGAAATGGTTTTAGTCCTTGATTTTCTTTTATGAGCATTATTACGACATCGTAGATTAGTTTCTTTGCTTGATTACTTACTATTGGTGCAAATGGTTTCAGTCCTTGATTTTTTTTCTTATGAGCATTATTGTGTACCACTACTAAGGTTTCTAACATTAGCCCAGGGACGTGAAAGAAGGAAAGTCTCAAAATCCGCACCAAACAAGTTCTTATCAAGCTTGGACAACATCTCTCTCCGAGTGTAATGTCTTGTAGTGATGTCGTCGCCTTAAGCATTTGGATGATGCCGTCGAAGAATGAGTGATTTCATATATCTCTCTTGTCTTGTACTCCCTCCGTCCCGGAATACTTGACCTGTTTTCCTTATCGGGTTGTCCCTTAATACTTGACCTGTTTCTAAAAATGGAAATATTCTAACAATATTACATTATTTCTCACTCCACCCCTATTAACCCACCTATCCCCTACTTCATACAAAAAATAATTAAAAATTCAAACCCCTACTCTCCCCCAACCCCATCTCTTAACCCACCTCCCACTAACTACATTAAAATAATATCCCACTATCAACTACTACCTATTAAATTAAATAAGTTAATTCAAATCCCTTAAACTCTGTGGCGGTCAAACCGGGTCGAGTATTCCGCGACGGAGGGAGTATACACCTTTTAGCTTGCTAATGTGTTTTCGATTTGTTTGTGGCACCTTCAATATGTAGTTCTAAATAGTTTCGTCTTACATGTCACGGAGTATGTGTAAATCTAACATTAACATACTCCGTGACATTTAGCATGTTTTATATTTTCCGTATCTCTTGCATTTACTATAATATTGTAAATATTCTTTCACGTAACATTTACGAAACAAATTTTTATAACTTGGGGATTGCGCACAATTGCCATTTAGCTAACCGTAAATGCTTGAGCAACAAGACGCCAAAAAATTGGACCTGATTGTAGTAATTACCTCGTTGCCCGAGCAATTCACAACCTCTTCTTCGCCAACAACCGC

Coding sequence (CDS)

ATGGCGAGTGTGGCCTTTCTTCTAGCTTTTTCCTGCTTTCCTTTTCTTTTCCTTTGTACTTCTTCTATCCGAGTTGTTACCTTCGCCCATCCCCTATGTTTGGAAAAATCTTGTGTTTTTATGGGTATTGTTGGCTGTTTCTTCATAGAGGATCTGATCAAGCTTCTAAGTTGCCCGACGCAGCTACTACTGATCGACAGCAAGCCTGGCAAAGGATTGAGAAAATTCTTGAAAGCACACTGCTCCGGCAACATATTAGTTGTTGCTGATTCTAAACTTGGATATGCAATCAAGGAGAATCTGCAAATTGACTGTGTTCACAATAATGCTATGATGGAGCTGATGAGAGGGATTTTGCAAGACATTATAGTCTATGCCAAGACTATGAAGTTGATGTTGAATCGTGTTACTGCTGCGAAGTTGACTTTCTGTGAGGTATTGAATATGGACTATGGAGAGGAAAGTTCCGAACTCTCTCTGCTTTCAACTACATGTTCCCACCATAAACACATTTTTGAGGTTTGTATAATGTCTTCTTAA

Protein sequence

MASVAFLLAFSCFPFLFLCTSSIRVVTFAHPLCLEKSCVFMGIVGCFFIEDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGILQDIIVYAKTMKLMLNRVTAAKLTFCEVLNMDYGEESSELSLLSTTCSHHKHIFEVCIMSS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23042.1Spo23042.1mRNA


Homology
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|902193744|gb|KNA12372.1| (hypothetical protein SOVF_126570 [Spinacia oleracea])

HSP 1 Score: 103.2 bits (256), Expect = 4.800e-19
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 

		  

Query: 63  LLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           LLIDSKP KGLRKFLKAHCSGN L VADSKLG AIKE LQIDCVHNNA+MELMRG+
Sbjct: 62  LLIDSKPSKGLRKFLKAHCSGNTLAVADSKLGNAIKEKLQIDCVHNNAVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|971577051|ref|XP_015158347.1| (PREDICTED: probable nucleolar protein 5-2 [Solanum tuberosum])

HSP 1 Score: 100.5 bits (249), Expect = 3.100e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLAVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|460404312|ref|XP_004247627.1| (PREDICTED: probable nucleolar protein 5-2 [Solanum lycopersicum])

HSP 1 Score: 99.4 bits (246), Expect = 6.900e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|697166044|ref|XP_009591833.1| (PREDICTED: probable nucleolar protein 5-2 [Nicotiana tomentosiformis])

HSP 1 Score: 99.4 bits (246), Expect = 6.900e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. NCBI nr
Match: gi|13623892|dbj|BAB41076.1| (MAR-binding protein [Nicotiana tabacum])

HSP 1 Score: 99.4 bits (246), Expect = 6.900e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QYM5_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_126570 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 3.300e-19
Identity = 49/56 (87.50%), Postives = 51/56 (91.07%), Query Frame = 1 

		  

Query: 63  LLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           LLIDSKP KGLRKFLKAHCSGN L VADSKLG AIKE LQIDCVHNNA+MELMRG+
Sbjct: 62  LLIDSKPSKGLRKFLKAHCSGNTLAVADSKLGNAIKEKLQIDCVHNNAVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: M1A6C0_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400006104 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.200e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLAVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: A0A0V0IMC4_SOLCH (Putative nucleolar protein 5-2-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.200e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLAVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: Q9AV96_TOBAC (MAR-binding protein OS=Nicotiana tabacum GN=MARBPF PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.800e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 51  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 110

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 111 AVMELMRGV 117
[Close]
BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Match: K4CVT4_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 4.800e-18
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1 

		  

Query: 50  EDLIKLLSCPTQLLLIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNN 109
           E+  + LS  T  LLIDSKP KGLRKFLKAHC G  L VADSKLG AIKE LQIDCVHNN
Sbjct: 56  ENTSEALSAAT--LLIDSKPSKGLRKFLKAHCDGETLGVADSKLGNAIKEKLQIDCVHNN 115

Query: 110 AMMELMRGI 119
           A+MELMRG+
Sbjct: 116 AVMELMRGV 122
[Close]
BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Match: NOP5B_ARATH (Probable nucleolar protein 5-2 OS=Arabidopsis thaliana GN=NOP5-2 PE=2 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.400e-15
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+IDC+HNNA+MEL+RG+
Sbjct: 64  LLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGV 118
[Close]
BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Match: NOP5A_ARATH (Probable nucleolar protein 5-1 OS=Arabidopsis thaliana GN=NOP5-1 PE=2 SV=2)

HSP 1 Score: 80.5 bits (197), Expect = 2.100e-14
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+I CVHNNA+MEL+RGI
Sbjct: 63  LLEGTPSKGLRKFLKANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGI 117
[Close]
BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Match: NOP5C_ARATH (Putative nucleolar protein 5-3 OS=Arabidopsis thaliana GN=NOP5-3 PE=3 SV=2)

HSP 1 Score: 62.8 bits (151), Expect = 4.500e-9
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 

		  

Query: 60  TQLLLIDSKPGKGLRKFLKAHCS-GNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           T+    +S    GL KFLK +C  G IL VAD KLG  I E L I+CVHN+A+MEL+RG+
Sbjct: 30  TEFYSAESARRMGLHKFLKNNCDDGEILAVADPKLGDIITEKLDIECVHNDAVMELLRGV 89
[Close]
BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Match: AT3G05060.1 (NOP56-like pre RNA processing ribonucleoprotein)

HSP 1 Score: 84.3 bits (207), Expect = 8.100e-17
Identity = 37/55 (67.27%), Postives = 45/55 (81.82%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+IDC+HNNA+MEL+RG+
Sbjct: 64  LLEGAPSKGLRKFLKANCQGETLAVADSKLGNVIKEKLKIDCIHNNAVMELLRGV 118
[Close]
BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Match: AT5G27120.1 (NOP56-like pre RNA processing ribonucleoprotein)

HSP 1 Score: 80.5 bits (197), Expect = 1.200e-15
Identity = 38/55 (69.09%), Postives = 44/55 (80.00%), Query Frame = 1 

		  

Query: 64  LIDSKPGKGLRKFLKAHCSGNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           L++  P KGLRKFLKA+C G  L VADSKLG  IKE L+I CVHNNA+MEL+RGI
Sbjct: 63  LLEGTPSKGLRKFLKANCVGETLAVADSKLGNIIKEKLKIVCVHNNAVMELLRGI 117
[Close]
BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Match: AT5G27140.1 (NOP56-like pre RNA processing ribonucleoprotein)

HSP 1 Score: 62.8 bits (151), Expect = 2.500e-10
Identity = 32/60 (53.33%), Postives = 40/60 (66.67%), Query Frame = 1 

		  

Query: 60  TQLLLIDSKPGKGLRKFLKAHCS-GNILVVADSKLGYAIKENLQIDCVHNNAMMELMRGI 119
           T+    +S    GL KFLK +C  G IL VAD KLG  I E L I+CVHN+A+MEL+RG+
Sbjct: 30  TEFYSAESARRMGLHKFLKNNCDDGEILAVADPKLGDIITEKLDIECVHNDAVMELLRGV 89
The following BLAST results are available for this feature:
BLAST of Spo23042.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902193744|gb|KNA12372.1|4.8e-1987.5hypothetical protein SOVF_1265... [more]
gi|971577051|ref|XP_015158347.1|3.1e-1873.9PREDICTED: probable nucleolar ... [more]
gi|460404312|ref|XP_004247627.1|6.9e-1873.9PREDICTED: probable nucleolar ... [more]
gi|697166044|ref|XP_009591833.1|6.9e-1873.9PREDICTED: probable nucleolar ... [more]
gi|13623892|dbj|BAB41076.1|6.9e-1873.9MAR-binding protein [Nicotiana... [more]
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BLAST of Spo23042.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QYM5_SPIOL3.3e-1987.5Uncharacterized protein OS=Spi... [more]
M1A6C0_SOLTU2.2e-1873.9Uncharacterized protein OS=Sol... [more]
A0A0V0IMC4_SOLCH2.2e-1873.9Putative nucleolar protein 5-2... [more]
Q9AV96_TOBAC4.8e-1873.9MAR-binding protein OS=Nicotia... [more]
K4CVT4_SOLLC4.8e-1873.9Uncharacterized protein OS=Sol... [more]
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BLAST of Spo23042.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NOP5B_ARATH1.4e-1567.2Probable nucleolar protein 5-2... [more]
NOP5A_ARATH2.1e-1469.0Probable nucleolar protein 5-1... [more]
NOP5C_ARATH4.5e-953.3Putative nucleolar protein 5-3... [more]
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BLAST of Spo23042.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT3G05060.18.1e-1767.2NOP56-like pre RNA processing ... [more]
AT5G27120.11.2e-1569.0NOP56-like pre RNA processing ... [more]
AT5G27140.12.5e-1053.3NOP56-like pre RNA processing ... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR10894NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58coord: 64..118
score: 5.0
NoneNo IPR availablePANTHERPTHR10894:SF1PROTEIN NOL-5coord: 64..118
score: 5.0

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0045010 actin nucleation
biological_process GO:0048193 Golgi vesicle transport
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0009616 virus induced gene silencing
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0009113 purine nucleobase biosynthetic process
biological_process GO:0006189 'de novo' IMP biosynthetic process
biological_process GO:0007155 cell adhesion
biological_process GO:0009987 cellular process
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0008152 metabolic process
biological_process GO:0006325 chromatin organization
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0008219 cell death
biological_process GO:0010076 maintenance of floral meristem identity
biological_process GO:0016102 diterpenoid biosynthetic process
biological_process GO:0015996 chlorophyll catabolic process
biological_process GO:0010228 vegetative to reproductive phase transition of meristem
biological_process GO:0051017 actin filament bundle assembly
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0009605 response to external stimulus
biological_process GO:0010154 fruit development
biological_process GO:0048457 floral whorl morphogenesis
biological_process GO:0006306 DNA methylation
biological_process GO:0007267 cell-cell signaling
biological_process GO:0048645 animal organ formation
biological_process GO:0042177 negative regulation of protein catabolic process
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0010223 secondary shoot formation
biological_process GO:0006952 defense response
biological_process GO:0044237 cellular metabolic process
biological_process GO:0010077 maintenance of inflorescence meristem identity
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006346 methylation-dependent chromatin silencing
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0010267 production of ta-siRNAs involved in RNA interference
biological_process GO:0007021 tubulin complex assembly
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006886 intracellular protein transport
biological_process GO:0009944 polarity specification of adaxial/abaxial axis
biological_process GO:0010090 trichome morphogenesis
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0010082 regulation of root meristem growth
biological_process GO:0043087 regulation of GTPase activity
biological_process GO:0009909 regulation of flower development
biological_process GO:0006468 protein phosphorylation
biological_process GO:0043547 positive regulation of GTPase activity
biological_process GO:0048481 plant ovule development
biological_process GO:0009960 endosperm development
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0010014 meristem initiation
biological_process GO:0010074 maintenance of meristem identity
biological_process GO:0009965 leaf morphogenesis
biological_process GO:0016570 histone modification
biological_process GO:0048449 floral organ formation
biological_process GO:0009855 determination of bilateral symmetry
biological_process GO:0071555 cell wall organization
biological_process GO:0042908 xenobiotic transport
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0055085 transmembrane transport
biological_process GO:0006572 tyrosine catabolic process
biological_process GO:0009558 embryo sac cellularization
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:1902000 homogentisate catabolic process
biological_process GO:0042207 styrene catabolic process
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0016567 protein ubiquitination
biological_process GO:0080006 internode patterning
cellular_component GO:0016020 membrane
cellular_component GO:0005829 cytosol
cellular_component GO:0005886 plasma membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005634 nucleus
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0044464 cell part
cellular_component GO:0005737 cytoplasm
molecular_function GO:0008233 peptidase activity
molecular_function GO:0004334 fumarylacetoacetase activity
molecular_function GO:0008374 O-acyltransferase activity
molecular_function GO:0004620 phospholipase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0005215 transporter activity
molecular_function GO:0008289 lipid binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0000822 inositol hexakisphosphate binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0019900 kinase binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0033612 receptor serine/threonine kinase binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005488 binding
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0016707 gibberellin 3-beta-dioxygenase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003677 DNA binding
molecular_function GO:0004386 helicase activity
molecular_function GO:0016740 transferase activity
molecular_function GO:0016874 ligase activity
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004637 phosphoribosylamine-glycine ligase activity
molecular_function GO:0004559 alpha-mannosidase activity
molecular_function GO:0050321 tau-protein kinase activity
molecular_function GO:0003779 actin binding
molecular_function GO:0016706 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008559 xenobiotic transmembrane transporting ATPase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo142400.80Barchart | Table
Spo230960.76Barchart | Table
Spo226940.74Barchart | Table
Spo057650.73Barchart | Table
Spo196090.73Barchart | Table
Spo166800.72Barchart | Table
Spo125430.72Barchart | Table
Spo124430.72Barchart | Table
Spo172200.72Barchart | Table
Spo013440.71Barchart | Table
Spo049850.71Barchart | Table
Spo077410.71Barchart | Table
Spo048730.71Barchart | Table
Spo073190.71Barchart | Table
Spo092140.71Barchart | Table
Spo034420.70Barchart | Table
Spo263520.70Barchart | Table
Spo024780.70Barchart | Table
Spo016600.70Barchart | Table
Spo269900.70Barchart | Table
Spo112850.70Barchart | Table
Spo005640.69Barchart | Table
Spo011030.69Barchart | Table
Spo023400.69Barchart | Table
Spo036650.69Barchart | Table
Spo056270.69Barchart | Table
Spo070350.69Barchart | Table
Spo116470.69Barchart | Table
Spo147820.69Barchart | Table
Spo202090.69Barchart | Table
Spo236140.69Barchart | Table
Spo172110.68Barchart | Table
Spo088630.68Barchart | Table
Spo172250.68Barchart | Table
Spo100210.68Barchart | Table
Spo018870.68Barchart | Table
Spo187810.68Barchart | Table
Spo195770.68Barchart | Table
Spo205030.67Barchart | Table
Spo027490.67Barchart | Table
Spo213880.67Barchart | Table
Spo131310.67Barchart | Table
Spo138990.67Barchart | Table
Spo065740.67Barchart | Table
Spo144240.67Barchart | Table
Spo144520.67Barchart | Table
Spo264910.67Barchart | Table
Spo083820.67Barchart | Table
Spo037720.67Barchart | Table
Spo076850.67Barchart | Table
Spo185420.67Barchart | Table
Spo124230.67Barchart | Table
Spo036020.67Barchart | Table
Spo243690.67Barchart | Table
Spo109650.67Barchart | Table
Spo201390.67Barchart | Table
Spo046600.67Barchart | Table
Spo013850.67Barchart | Table
Spo085410.66Barchart | Table
Spo049240.66Barchart | Table
Spo120910.66Barchart | Table
Spo047420.66Barchart | Table
Spo045190.66Barchart | Table
Spo149090.66Barchart | Table
Spo177260.66Barchart | Table
Spo190130.66Barchart | Table
Spo199860.66Barchart | Table
Spo201870.66Barchart | Table
Spo218230.66Barchart | Table
Spo259810.66Barchart | Table
Spo261910.66Barchart | Table
Spo265150.65Barchart | Table
Spo199360.65Barchart | Table
Spo084030.65Barchart | Table
Spo132170.65Barchart | Table
Spo036620.65Barchart | Table
Spo149110.65Barchart | Table
Spo032850.65Barchart | Table
Spo205550.65Barchart | Table