Spo23048 (gene)

Overview
NameSpo23048
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionRibosomal protein S10
LocationSuper_scaffold_45 : 567666 .. 567995 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTACCAAGATTCGTGTCGTGGTTACCTCTTTTGGTCGTCCATTTTTGGAAAGCCTTCCACCTCATACGCGGAAGATTACAATGCCTGAAACTAGAGTATTATACACTGTTCTCCGGTCACCTCACATTGACAAAAAGTCTAGAGAACAATTCGAGACAAGGACCCAGAAATGTGTACTGGATATTAAAGCGGAGAGGCATGAATTGCACCAGAAGTTATTTTGGTTAAAACGACATCGCATGTTTGGAGGTCAAATGGAAGTCCAAGTGTTTTCCAAGACTCGTCTAGACCCTAAGCTTTTGCCTCTCCCGCAGAGAAAGCCTTAG

mRNA sequence

ATGAGTACCAAGATTCGTGTCGTGGTTACCTCTTTTGGTCGTCCATTTTTGGAAAGCCTTCCACCTCATACGCGGAAGATTACAATGCCTGAAACTAGAGTATTATACACTGTTCTCCGGTCACCTCACATTGACAAAAAGTCTAGAGAACAATTCGAGACAAGGACCCAGAAATGTGTACTGGATATTAAAGCGGAGAGGCATGAATTGCACCAGAAGTTATTTTGGTTAAAACGACATCGCATGTTTGGAGGTCAAATGGAAGTCCAAGTGTTTTCCAAGACTCGTCTAGACCCTAAGCTTTTGCCTCTCCCGCAGAGAAAGCCTTAG

Coding sequence (CDS)

ATGAGTACCAAGATTCGTGTCGTGGTTACCTCTTTTGGTCGTCCATTTTTGGAAAGCCTTCCACCTCATACGCGGAAGATTACAATGCCTGAAACTAGAGTATTATACACTGTTCTCCGGTCACCTCACATTGACAAAAAGTCTAGAGAACAATTCGAGACAAGGACCCAGAAATGTGTACTGGATATTAAAGCGGAGAGGCATGAATTGCACCAGAAGTTATTTTGGTTAAAACGACATCGCATGTTTGGAGGTCAAATGGAAGTCCAAGTGTTTTCCAAGACTCGTCTAGACCCTAAGCTTTTGCCTCTCCCGCAGAGAAAGCCTTAG

Protein sequence

MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23048.1Spo23048.1mRNA


Homology
[Close]
BLAST of Spo23048.1 vs. NCBI nr
Match: gi|902153362|gb|KNA05692.1| (hypothetical protein SOVF_187970 [Spinacia oleracea])

HSP 1 Score: 221.5 bits (563), Expect = 7.300e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV
Sbjct: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 110
           LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP
Sbjct: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 109
[Close]
BLAST of Spo23048.1 vs. NCBI nr
Match: gi|902239930|gb|KNA25802.1| (hypothetical protein SOVF_003520 isoform B [Spinacia oleracea])

HSP 1 Score: 215.3 bits (547), Expect = 5.200e-53
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVVVTSFGRPFLESLP HTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV
Sbjct: 1   MSTKIRVVVTSFGRPFLESLPAHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 110
           LDIKAERHEL QKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP
Sbjct: 61  LDIKAERHELRQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 109
[Close]
BLAST of Spo23048.1 vs. NCBI nr
Match: gi|11177518|gb|AAG32315.1|AF287337_1 (ribosomal protein S10 [Spinacia oleracea])

HSP 1 Score: 214.2 bits (544), Expect = 1.200e-52
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVVVTSFGRPFLESLP HTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV
Sbjct: 1   MSTKIRVVVTSFGRPFLESLPAHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 110
           LDIKAERHEL QKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQR+P
Sbjct: 61  LDIKAERHELRQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRRP 109
[Close]
BLAST of Spo23048.1 vs. NCBI nr
Match: gi|870843448|gb|KMS96619.1| (hypothetical protein BVRB_8g201490 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 191.4 bits (485), Expect = 8.100e-46
Identity = 92/108 (85.19%), Postives = 101/108 (93.52%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVV++SFGRP +E+LPPHTRKI +PET+VLYTVLRSPHIDKKSREQFETR QK +
Sbjct: 1   MSTKIRVVISSFGRPLMENLPPHTRKIGLPETKVLYTVLRSPHIDKKSREQFETRVQKYI 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRK 109
           +DIKAERHEL QKLFWLKRHRMFG Q EVQVFSKTRLDP+LLPLPQRK
Sbjct: 61  VDIKAERHELRQKLFWLKRHRMFGAQFEVQVFSKTRLDPQLLPLPQRK 108
[Close]
BLAST of Spo23048.1 vs. NCBI nr
Match: gi|902239929|gb|KNA25801.1| (hypothetical protein SOVF_003520 isoform A [Spinacia oleracea])

HSP 1 Score: 164.1 bits (414), Expect = 1.400e-37
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 

		  

Query: 29  MPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDIKAERHELHQKLFWLKRHRMFGGQME 88
           MPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDIKAERHEL QKLFWLKRHRMFGGQME
Sbjct: 1   MPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDIKAERHELRQKLFWLKRHRMFGGQME 60

Query: 89  VQVFSKTRLDPKLLPLPQRKP 110
           VQVFSKTRLDPKLLPLPQRKP
Sbjct: 61  VQVFSKTRLDPKLLPLPQRKP 81
[Close]
BLAST of Spo23048.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QEK2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_187970 PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 5.100e-55
Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV
Sbjct: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 110
           LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP
Sbjct: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 109
[Close]
BLAST of Spo23048.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S3U3_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_003520 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 3.700e-53
Identity = 107/109 (98.17%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVVVTSFGRPFLESLP HTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV
Sbjct: 1   MSTKIRVVVTSFGRPFLESLPAHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 110
           LDIKAERHEL QKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP
Sbjct: 61  LDIKAERHELRQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 109
[Close]
BLAST of Spo23048.1 vs. UniProtKB/TrEMBL
Match: Q9FUU2_SPIOL (Ribosomal protein S10 OS=Spinacia oleracea PE=4 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 8.100e-53
Identity = 106/109 (97.25%), Postives = 107/109 (98.17%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVVVTSFGRPFLESLP HTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV
Sbjct: 1   MSTKIRVVVTSFGRPFLESLPAHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRKP 110
           LDIKAERHEL QKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQR+P
Sbjct: 61  LDIKAERHELRQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRRP 109
[Close]
BLAST of Spo23048.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B5V8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_8g201490 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 5.700e-46
Identity = 92/108 (85.19%), Postives = 101/108 (93.52%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
           MSTKIRVV++SFGRP +E+LPPHTRKI +PET+VLYTVLRSPHIDKKSREQFETR QK +
Sbjct: 1   MSTKIRVVISSFGRPLMENLPPHTRKIGLPETKVLYTVLRSPHIDKKSREQFETRVQKYI 60

Query: 61  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLDPKLLPLPQRK 109
           +DIKAERHEL QKLFWLKRHRMFG Q EVQVFSKTRLDP+LLPLPQRK
Sbjct: 61  VDIKAERHELRQKLFWLKRHRMFGAQFEVQVFSKTRLDPQLLPLPQRK 108
[Close]
BLAST of Spo23048.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S227_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_003520 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 9.700e-38
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 1 

		  

Query: 29  MPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDIKAERHELHQKLFWLKRHRMFGGQME 88
           MPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDIKAERHEL QKLFWLKRHRMFGGQME
Sbjct: 1   MPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDIKAERHELRQKLFWLKRHRMFGGQME 60

Query: 89  VQVFSKTRLDPKLLPLPQRKP 110
           VQVFSKTRLDPKLLPLPQRKP
Sbjct: 61  VQVFSKTRLDPKLLPLPQRKP 81
[Close]
BLAST of Spo23048.1 vs. ExPASy Swiss-Prot
Match: RT10_PEA (Ribosomal protein S10, mitochondrial OS=Pisum sativum GN=RPS10 PE=2 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.300e-29
Identity = 65/102 (63.73%), Postives = 77/102 (75.49%), Query Frame = 1 

		  

Query: 1   MSTKIRVVVTSFGRPFLES----LPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRT 60
           M+TKIR+V+ SF  PFLE+    LPP+T KI +PE+RVLYTVLRSPHIDKKSREQFE   
Sbjct: 1   MTTKIRIVIRSFDHPFLENHFGGLPPYTWKIGLPESRVLYTVLRSPHIDKKSREQFEMEI 60

Query: 61  QKCVLDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLD 99
           +K  L IK E+HEL +K FWLKR R+FG Q E+  F KTR D
Sbjct: 61  KKKYLVIKTEKHELRKKFFWLKRQRLFGAQYEILFFCKTRSD 102
[Close]
BLAST of Spo23048.1 vs. ExPASy Swiss-Prot
Match: RT10_ARATH (40S ribosomal protein S10, mitochondrial OS=Arabidopsis thaliana GN=RPS10 PE=2 SV=2)

HSP 1 Score: 121.3 bits (303), Expect = 6.500e-27
Identity = 61/98 (62.24%), Postives = 74/98 (75.51%), Query Frame = 1 

		  

Query: 3   TKIRVVVTSFGRPFLES--LPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 62
           TKI + + SF  P  ++  LPPHTRK+ MP+TR LYTVLRSPH+DKKSREQFE R +K  
Sbjct: 128 TKICIAIRSFVNPEKQAWCLPPHTRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRF 187

Query: 63  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLD 99
           L IKA+ HEL +KLFWLKR+R+ G Q E+Q   KTRLD
Sbjct: 188 LVIKAQSHELSKKLFWLKRYRILGAQYELQFHCKTRLD 225
[Close]
BLAST of Spo23048.1 vs. ExPASy Swiss-Prot
Match: RT10_MARPO (Ribosomal protein S10, mitochondrial OS=Marchantia polymorpha GN=RPS10 PE=3 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 3.200e-18
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1 

		  

Query: 1  MSTKIRVVVTSFGRPFLESLPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 60
          M+ KI +V+ SF       L  +TRKI +P+ + LYTVLRSPHIDKKSREQFE R  K +
Sbjct: 1  MTAKICIVIKSFENQ-RSGLLLNTRKIGLPKKQTLYTVLRSPHIDKKSREQFEMRIHKQL 60

Query: 61 LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLD 99
          L I+ E H+L +KL WLK H + G Q+++  + +TRLD
Sbjct: 61 LVIETETHKLREKLNWLKLHDLLGVQVKIIFYYQTRLD 97
[Close]
BLAST of Spo23048.1 vs. ExPASy Swiss-Prot
Match: RS10_CHLMU (30S ribosomal protein S10 OS=Chlamydia muridarum (strain MoPn / Nigg) GN=rpsJ PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.700e-7
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 

		  

Query: 27 ITMPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDI 64
          I +P  R +YTVLRSPH+DKKSREQFE RT K ++DI
Sbjct: 42 IPLPTKREVYTVLRSPHVDKKSREQFEIRTHKRLIDI 78
[Close]
BLAST of Spo23048.1 vs. ExPASy Swiss-Prot
Match: RS10_CHLFF (30S ribosomal protein S10 OS=Chlamydia felis (strain Fe/C-56) GN=rpsJ PE=3 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 9.700e-7
Identity = 25/37 (67.57%), Postives = 30/37 (81.08%), Query Frame = 1 

		  

Query: 27 ITMPETRVLYTVLRSPHIDKKSREQFETRTQKCVLDI 64
          I +P  R +YTVLRSPH+DKKSREQFE RT K ++DI
Sbjct: 42 IPLPTKREVYTVLRSPHVDKKSREQFEIRTHKRLIDI 78
[Close]
BLAST of Spo23048.1 vs. TAIR (Arabidopsis)
Match: AT3G22300.1 (ribosomal protein S10)

HSP 1 Score: 121.3 bits (303), Expect = 3.600e-28
Identity = 61/98 (62.24%), Postives = 74/98 (75.51%), Query Frame = 1 

		  

Query: 3   TKIRVVVTSFGRPFLES--LPPHTRKITMPETRVLYTVLRSPHIDKKSREQFETRTQKCV 62
           TKI + + SF  P  ++  LPPHTRK+ MP+TR LYTVLRSPH+DKKSREQFE R +K  
Sbjct: 128 TKICIAIRSFVNPEKQAWCLPPHTRKVAMPDTRTLYTVLRSPHVDKKSREQFEMRFKKRF 187

Query: 63  LDIKAERHELHQKLFWLKRHRMFGGQMEVQVFSKTRLD 99
           L IKA+ HEL +KLFWLKR+R+ G Q E+Q   KTRLD
Sbjct: 188 LVIKAQSHELSKKLFWLKRYRILGAQYELQFHCKTRLD 225
The following BLAST results are available for this feature:
BLAST of Spo23048.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902153362|gb|KNA05692.1|7.3e-55100.hypothetical protein SOVF_1879... [more]
gi|902239930|gb|KNA25802.1|5.2e-5398.1hypothetical protein SOVF_0035... [more]
gi|11177518|gb|AAG32315.1|AF287337_11.2e-5297.2ribosomal protein S10 [Spinaci... [more]
gi|870843448|gb|KMS96619.1|8.1e-4685.1hypothetical protein BVRB_8g20... [more]
gi|902239929|gb|KNA25801.1|1.4e-3798.7hypothetical protein SOVF_0035... [more]
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BLAST of Spo23048.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9QEK2_SPIOL5.1e-55100.Uncharacterized protein OS=Spi... [more]
A0A0K9S3U3_SPIOL3.7e-5398.1Uncharacterized protein OS=Spi... [more]
Q9FUU2_SPIOL8.1e-5397.2Ribosomal protein S10 OS=Spina... [more]
A0A0J8B5V8_BETVU5.7e-4685.1Uncharacterized protein OS=Bet... [more]
A0A0K9S227_SPIOL9.7e-3898.7Uncharacterized protein OS=Spi... [more]
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BLAST of Spo23048.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RT10_PEA5.3e-2963.7Ribosomal protein S10, mitocho... [more]
RT10_ARATH6.5e-2762.240S ribosomal protein S10, mit... [more]
RT10_MARPO3.2e-1851.0Ribosomal protein S10, mitocho... [more]
RS10_CHLMU9.7e-767.530S ribosomal protein S10 OS=C... [more]
RS10_CHLFF9.7e-767.530S ribosomal protein S10 OS=C... [more]
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BLAST of Spo23048.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT3G22300.13.6e-2862.2ribosomal protein S10[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001848Ribosomal protein S10PRINTSPR00971RIBOSOMALS10coord: 27..42
score: 3.5E-9coord: 4..17
score: 3.5E-9coord: 48..62
score: 3.
IPR001848Ribosomal protein S10PANTHERPTHR1170030S RIBOSOMAL PROTEIN S10 FAMILY MEMBERcoord: 1..98
score: 1.9
IPR027486Ribosomal protein S10 domainGENE3D3.30.70.600coord: 22..92
score: 3.1
IPR027486Ribosomal protein S10 domainPFAMPF00338Ribosomal_S10coord: 26..74
score: 3.1
IPR027486Ribosomal protein S10 domainSMARTSM01403Ribosomal_S10_2coord: 6..90
score: 1.
IPR027486Ribosomal protein S10 domainunknownSSF54999Ribosomal protein S10coord: 4..90
score: 2.49
NoneNo IPR availablePANTHERPTHR11700:SF740S RIBOSOMAL PROTEIN S10, MITOCHONDRIALcoord: 1..98
score: 1.9

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0000478 endonucleolytic cleavage involved in rRNA processing
biological_process GO:0006950 response to stress
biological_process GO:0006457 protein folding
biological_process GO:0009165 nucleotide biosynthetic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006096 glycolytic process
biological_process GO:0006094 gluconeogenesis
biological_process GO:0001510 RNA methylation
biological_process GO:0009909 regulation of flower development
biological_process GO:0006626 protein targeting to mitochondrion
biological_process GO:0006412 translation
biological_process GO:0000338 protein deneddylation
biological_process GO:0009640 photomorphogenesis
biological_process GO:0006406 mRNA export from nucleus
biological_process GO:0006606 protein import into nucleus
biological_process GO:0008152 metabolic process
biological_process GO:0009663 plasmodesma organization
biological_process GO:0002943 tRNA dihydrouridine synthesis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0010497 plasmodesmata-mediated intercellular transport
cellular_component GO:0005730 nucleolus
cellular_component GO:0005840 ribosome
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005618 cell wall
cellular_component GO:0005774 vacuolar membrane
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0015934 large ribosomal subunit
molecular_function GO:0008568 microtubule-severing ATPase activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0005525 GTP binding
molecular_function GO:0008097 5S rRNA binding
molecular_function GO:0005515 protein binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0017150 tRNA dihydrouridine synthase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0008026 ATP-dependent helicase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0016817 hydrolase activity, acting on acid anhydrides
RNA-Seq Expression