Spo23058 (gene) | SpinachBase

Overview


Name	Spo23058
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	CP12 domain-containing protein 3
Location	Super_scaffold_45 : 378243 .. 378689 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACATGGCATGTTTGAGTGTAGGTTTAGGAATGGTTCCAAAATCATTTCAGACAATCTCAAAGAAATCCGAAGCAAAGTCATCAGCAGGAGCAATTTCCCTAAGAAGATCAAATCTAAGAATGATTGCAAACTCATCATCATCATCATCATCATCCTCAAAATCAGGAGAAGATGAAGAGATGAAGATGAAGATCAAATACGAAGGGACTCGTAGGAGAGAGAAAGAGATGACAGAGATGATAGAGAAGAAGATTCGAGAAGCTGAAGAGGTTTGCGGTGAAGATAAGATGTCAGATGGGTGTAAAGTAGCTTGGGATGAAGTCGAAGAAATCAGTGCAGCTAAATCTCATCTTAGACTCCAATTGATGCATTCTGGAGATCCTCTTGAGAATTTCTGTCACCAACATCCTGAAACTGACGAGTGTCGTATTTACCAAGATTAG

mRNA sequence

ATGAACATGGCATGTTTGAGTGTAGGTTTAGGAATGGTTCCAAAATCATTTCAGACAATCTCAAAGAAATCCGAAGCAAAGTCATCAGCAGGAGCAATTTCCCTAAGAAGATCAAATCTAAGAATGATTGCAAACTCATCATCATCATCATCATCATCCTCAAAATCAGGAGAAGATGAAGAGATGAAGATGAAGATCAAATACGAAGGGACTCGTAGGAGAGAGAAAGAGATGACAGAGATGATAGAGAAGAAGATTCGAGAAGCTGAAGAGGTTTGCGGTGAAGATAAGATGTCAGATGGGTGTAAAGTAGCTTGGGATGAAGTCGAAGAAATCAGTGCAGCTAAATCTCATCTTAGACTCCAATTGATGCATTCTGGAGATCCTCTTGAGAATTTCTGTCACCAACATCCTGAAACTGACGAGTGTCGTATTTACCAAGATTAG

Coding sequence (CDS)

ATGAACATGGCATGTTTGAGTGTAGGTTTAGGAATGGTTCCAAAATCATTTCAGACAATCTCAAAGAAATCCGAAGCAAAGTCATCAGCAGGAGCAATTTCCCTAAGAAGATCAAATCTAAGAATGATTGCAAACTCATCATCATCATCATCATCATCCTCAAAATCAGGAGAAGATGAAGAGATGAAGATGAAGATCAAATACGAAGGGACTCGTAGGAGAGAGAAAGAGATGACAGAGATGATAGAGAAGAAGATTCGAGAAGCTGAAGAGGTTTGCGGTGAAGATAAGATGTCAGATGGGTGTAAAGTAGCTTGGGATGAAGTCGAAGAAATCAGTGCAGCTAAATCTCATCTTAGACTCCAATTGATGCATTCTGGAGATCCTCTTGAGAATTTCTGTCACCAACATCCTGAAACTGACGAGTGTCGTATTTACCAAGATTAG

Protein sequence

MNMACLSVGLGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDPLENFCHQHPETDECRIYQD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23058.1	Spo23058.1	mRNA

Homology

[Close]

BLAST of Spo23058.1 vs. NCBI nr
Match: gi|902171827|gb|KNA08050.1| (hypothetical protein SOVF_166180, partial [Spinacia oleracea])

HSP 1 Score: 261.9 bits (668), Expect = 6.600e-67
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1

		  
Query: 10  LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 69
           LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE
Sbjct: 1   LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 60

Query: 70  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 129
           GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP
Sbjct: 61  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 120

Query: 130 LENFCHQHPETDECRIYQD 149
           LENFCHQHPETDECRIYQD
Sbjct: 121 LENFCHQHPETDECRIYQD 139

[Close]

BLAST of Spo23058.1 vs. NCBI nr
Match: gi|661888802|emb|CDP07245.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 118.6 bits (296), Expect = 9.100e-24
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1

		  
Query: 29  SAGAISLRRSNLRMIANSSSSSSS-------SSKSGEDEEMKMKIKYEGTRRREKEMTEM 88
           ++GA++  R N + +   SS S           +SG      M  KY+GT+ REK++TEM
Sbjct: 66  ASGAVTAGRENRKQMRGGSSPSGMVIPKAGRMRRSGAQATTMMMGKYKGTQMREKQLTEM 125

Query: 89  IEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQL--MHSGDPLENFCHQHPE 148
           IEKK+REA+EVCGED  SD CKVAWDEVEE+S AK+ LRL+L  MH  DPLE+FC  +PE
Sbjct: 126 IEKKVREAKEVCGEDGKSDECKVAWDEVEEVSQAKADLRLKLEIMHQ-DPLESFCQDNPE 185

[Close]

BLAST of Spo23058.1 vs. NCBI nr
Match: gi|698539804|ref|XP_009765560.1| (PREDICTED: calvin cycle protein CP12-3, chloroplastic [Nicotiana sylvestris])

HSP 1 Score: 118.2 bits (295), Expect = 1.200e-23
Identity = 62/112 (55.36%), Postives = 79/112 (70.54%), Query Frame = 1

		  
Query: 37  RSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYEGTRRREKEMTEMIEKKIREAEEVCGED 96
           R  L+ +  SS  S  S             KY+GT+ REK++TEMIEKK++EA+ VCGED
Sbjct: 25  RKGLQKVVMSSGGSGGSGSP----------KYKGTQMREKQLTEMIEKKVKEAKAVCGED 84

Query: 97  KMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDPLENFCHQHPETDECRIYQD 149
             SD CKVAWDEVEE+S AK+HLR++L  + DPLE+FC  +PETDECRIY+D
Sbjct: 85  ARSDECKVAWDEVEEVSQAKAHLRIKLQLNQDPLESFCQDNPETDECRIYED 126

[Close]

BLAST of Spo23058.1 vs. NCBI nr
Match: gi|697174019|ref|XP_009595948.1| (PREDICTED: calvin cycle protein CP12-3, chloroplastic [Nicotiana tomentosiformis])

HSP 1 Score: 117.9 bits (294), Expect = 1.500e-23
Identity = 62/115 (53.91%), Postives = 81/115 (70.43%), Query Frame = 1

		  
Query: 34  SLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYEGTRRREKEMTEMIEKKIREAEEVC 93
           +L R  L+ +  SS  S +              KY+GT+ REK++TEMIEKK++EA+ VC
Sbjct: 22  ALTRKGLQKVTMSSGGSGAP-------------KYKGTQMREKQLTEMIEKKVKEAKAVC 81

Query: 94  GEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDPLENFCHQHPETDECRIYQD 149
           GED  SD CKVAWDEVEE+S AK+HLR++L  + DPLE+FC  +PETDECRIY+D
Sbjct: 82  GEDARSDECKVAWDEVEEVSQAKAHLRIKLQLNQDPLESFCQDNPETDECRIYED 123

[Close]

BLAST of Spo23058.1 vs. NCBI nr
Match: gi|604331747|gb|EYU36605.1| (hypothetical protein MIMGU_mgv1a014758mg [Erythranthe guttata])

HSP 1 Score: 116.3 bits (290), Expect = 4.500e-23
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1

		  
Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           +MKI Y+GT  RE+ +TEMIEKK+ EA++VCGED+ SD CKVAWDEVEE+S AK+ LRL+
Sbjct: 94  EMKI-YKGTHMREQRLTEMIEKKVMEAKQVCGEDETSDECKVAWDEVEEVSQAKADLRLK 153

Query: 123 LMH-SGDPLENFCHQHPETDECRIYQD 149
           L H   DPLE+FC ++PETDECRIY+D
Sbjct: 154 LHHLQQDPLEHFCQENPETDECRIYED 179

[Close]

BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QLB3_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_166180 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.600e-67
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 1

		  
Query: 10  LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 69
           LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE
Sbjct: 1   LGMVPKSFQTISKKSEAKSSAGAISLRRSNLRMIANSSSSSSSSSKSGEDEEMKMKIKYE 60

Query: 70  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 129
           GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP
Sbjct: 61  GTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSGDP 120

Query: 130 LENFCHQHPETDECRIYQD 149
           LENFCHQHPETDECRIYQD
Sbjct: 121 LENFCHQHPETDECRIYQD 139

[Close]

BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A068UFC8_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00024453001 PE=4 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 6.300e-24
Identity = 70/129 (54.26%), Postives = 89/129 (68.99%), Query Frame = 1

		  
Query: 29  SAGAISLRRSNLRMIANSSSSSSS-------SSKSGEDEEMKMKIKYEGTRRREKEMTEM 88
           ++GA++  R N + +   SS S           +SG      M  KY+GT+ REK++TEM
Sbjct: 66  ASGAVTAGRENRKQMRGGSSPSGMVIPKAGRMRRSGAQATTMMMGKYKGTQMREKQLTEM 125

Query: 89  IEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQL--MHSGDPLENFCHQHPE 148
           IEKK+REA+EVCGED  SD CKVAWDEVEE+S AK+ LRL+L  MH  DPLE+FC  +PE
Sbjct: 126 IEKKVREAKEVCGEDGKSDECKVAWDEVEEVSQAKADLRLKLEIMHQ-DPLESFCQDNPE 185

[Close]

BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A022RCH1_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a014758mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 3.100e-23
Identity = 58/87 (66.67%), Postives = 73/87 (83.91%), Query Frame = 1

		  
Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           +MKI Y+GT  RE+ +TEMIEKK+ EA++VCGED+ SD CKVAWDEVEE+S AK+ LRL+
Sbjct: 94  EMKI-YKGTHMREQRLTEMIEKKVMEAKQVCGEDETSDECKVAWDEVEEVSQAKADLRLK 153

Query: 123 LMH-SGDPLENFCHQHPETDECRIYQD 149
           L H   DPLE+FC ++PETDECRIY+D
Sbjct: 154 LHHLQQDPLEHFCQENPETDECRIYED 179

[Close]

BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: M1ALW9_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400009928 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.100e-23
Identity = 52/80 (65.00%), Postives = 67/80 (83.75%), Query Frame = 1

		  
Query: 67  KYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHS 126
           KY+GT+ REK++TEMIEKK++EA+EVCGED  SD CKVAWDEVEE+S AK+HLR++L  +
Sbjct: 41  KYKGTQMREKQLTEMIEKKVKEAKEVCGEDARSDECKVAWDEVEEVSQAKAHLRIKLQLN 100

Query: 127 GDPLENFCHQHPETDECRIY 147
            DPLE +C  +P+ DECR Y
Sbjct: 101 QDPLEPYCQDNPDADECRTY 120

[Close]

BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Match: A0A0V0HWT8_SOLCH (Putative calvin cycle protein CP12-3, chloroplastic-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 9.100e-23
Identity = 52/80 (65.00%), Postives = 67/80 (83.75%), Query Frame = 1

		  
Query: 67  KYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHS 126
           KY+GT+ REK++TEMIEKK++EA+EVCGED  SD CKVAWDEVEE+S AK+HLR++L  +
Sbjct: 41  KYKGTQMREKQLTEMIEKKVKEAKEVCGEDARSDECKVAWDEVEEVSQAKAHLRIKLQLN 100

Query: 127 GDPLENFCHQHPETDECRIY 147
            DPLE +C  +P+ DECR Y
Sbjct: 101 QDPLEPYCQDNPDADECRTY 120

[Close]

BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP123_ARATH (Calvin cycle protein CP12-3, chloroplastic OS=Arabidopsis thaliana GN=CP12-3 PE=1 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.400e-21
Identity = 49/87 (56.32%), Postives = 72/87 (82.76%), Query Frame = 1

		  
Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           K   KY GT+ RE++++EMIE+K++EA EVC  ++MS+ C+VAWDEVEE+S A++ LR++
Sbjct: 48  KATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIK 107

Query: 123 L-MHSGDPLENFCHQHPETDECRIYQD 149
           L + + DPLE+FC ++PETDECRIY+D
Sbjct: 108 LKLLNQDPLESFCQENPETDECRIYED 134

[Close]

BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP121_ARATH (Calvin cycle protein CP12-1, chloroplastic OS=Arabidopsis thaliana GN=CP12-1 PE=1 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 5.900e-15
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1

		  
Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E E++E +EK I+EA+E C +D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 50  EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEY 109

Query: 135 CHQHPETDECRIYQD 149
           C+ +PETDECR Y +
Sbjct: 110 CNDNPETDECRTYDN 124

[Close]

BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP122_ARATH (Calvin cycle protein CP12-2, chloroplastic OS=Arabidopsis thaliana GN=CP12-2 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 5.500e-13
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1

		  
Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E  +++++EK I+EA+E C  D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 57  EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEY 116

Query: 135 CHQHPETDECRIYQD 149
           C  +PET+ECR Y +
Sbjct: 117 CKDNPETNECRTYDN 131

[Close]

BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Match: CP12_CHLRE (Calvin cycle protein CP12, chloroplastic OS=Chlamydomonas reinhardtii GN=CP12 PE=1 SV=2)

HSP 1 Score: 63.2 bits (152), Expect = 2.800e-9
Identity = 31/75 (41.33%), Postives = 47/75 (62.67%), Query Frame = 1

		  
Query: 77  EMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHS---GDPLENF 136
           ++ + ++  ++EAE+ C +   +D C VAWD VEE+SAA SH +  +       DPLE F
Sbjct: 34  DLNKKVQDAVKEAEDACAKGTSAD-CAVAWDTVEELSAAVSHKKDAVKADVTLTDPLEAF 93

Query: 137 CHQHPETDECRIYQD 149
           C   P+ DECR+Y+D
Sbjct: 94  CKDAPDADECRVYED 107

[Close]

BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Match: AT1G76560.1 (CP12 domain-containing protein 3)

HSP 1 Score: 104.0 bits (258), Expect = 8.200e-23
Identity = 49/87 (56.32%), Postives = 72/87 (82.76%), Query Frame = 1

		  
Query: 63  KMKIKYEGTRRREKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQ 122
           K   KY GT+ RE++++EMIE+K++EA EVC  ++MS+ C+VAWDEVEE+S A++ LR++
Sbjct: 48  KATAKYMGTKMREEKLSEMIEEKVKEATEVCEAEEMSEECRVAWDEVEEVSQARADLRIK 107

Query: 123 L-MHSGDPLENFCHQHPETDECRIYQD 149
           L + + DPLE+FC ++PETDECRIY+D
Sbjct: 108 LKLLNQDPLESFCQENPETDECRIYED 134

[Close]

BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Match: AT2G47400.1 (CP12 domain-containing protein 1)

HSP 1 Score: 82.0 bits (201), Expect = 3.300e-16
Identity = 40/75 (53.33%), Postives = 53/75 (70.67%), Query Frame = 1

		  
Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E E++E +EK I+EA+E C +D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 50  EGEISEKVEKSIQEAKETCADDPVSGECVAAWDEVEELSAAASHARDKKKAGGSDPLEEY 109

Query: 135 CHQHPETDECRIYQD 149
           C+ +PETDECR Y +
Sbjct: 110 CNDNPETDECRTYDN 124

[Close]

BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Match: AT3G62410.1 (CP12 domain-containing protein 2)

HSP 1 Score: 75.5 bits (184), Expect = 3.100e-14
Identity = 37/75 (49.33%), Postives = 51/75 (68.00%), Query Frame = 1

		  
Query: 75  EKEMTEMIEKKIREAEEVCGEDKMSDGCKVAWDEVEEISAAKSHLRLQLMHSG-DPLENF 134
           E  +++++EK I+EA+E C  D +S  C  AWDEVEE+SAA SH R +    G DPLE +
Sbjct: 57  EGGISDVVEKSIKEAQETCAGDPVSGECVAAWDEVEELSAAASHARDKKKADGSDPLEEY 116

Query: 135 CHQHPETDECRIYQD 149
           C  +PET+ECR Y +
Sbjct: 117 CKDNPETNECRTYDN 131

The following BLAST results are available for this feature:

BLAST of Spo23058.1 vs. NCBI nr
BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
BLAST of Spo23058.1 vs. TAIR (Arabidopsis)

BLAST of Spo23058.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
gi\|902171827\|gb\|KNA08050.1\|	6.6e-67	100.	hypothetical protein SOVF_1661...	[more]
gi\|661888802\|emb\|CDP07245.1\|	9.1e-24	54.2	unnamed protein product [Coffe...	[more]
gi\|698539804\|ref\|XP_009765560.1\|	1.2e-23	55.3	PREDICTED: calvin cycle protei...	[more]
gi\|697174019\|ref\|XP_009595948.1\|	1.5e-23	53.9	PREDICTED: calvin cycle protei...	[more]
gi\|604331747\|gb\|EYU36605.1\|	4.5e-23	66.6	hypothetical protein MIMGU_mgv...	[more]

BLAST of Spo23058.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
A0A0K9QLB3_SPIOL	4.6e-67	100.	Uncharacterized protein (Fragm...	[more]
A0A068UFC8_COFCA	6.3e-24	54.2	Uncharacterized protein OS=Cof...	[more]
A0A022RCH1_ERYGU	3.1e-23	66.6	Uncharacterized protein OS=Ery...	[more]
M1ALW9_SOLTU	9.1e-23	65.0	Uncharacterized protein OS=Sol...	[more]
A0A0V0HWT8_SOLCH	9.1e-23	65.0	Putative calvin cycle protein ...	[more]

BLAST of Spo23058.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 4

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
CP123_ARATH	1.4e-21	56.3	Calvin cycle protein CP12-3, c...	[more]
CP121_ARATH	5.9e-15	53.3	Calvin cycle protein CP12-1, c...	[more]
CP122_ARATH	5.5e-13	49.3	Calvin cycle protein CP12-2, c...	[more]
CP12_CHLRE	2.8e-9	41.3	Calvin cycle protein CP12, chl...	[more]

BLAST of Spo23058.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description
AT1G76560.1	8.2e-23	56.3	CP12 domain-containing protein...	[more]
AT2G47400.1	3.3e-16	53.3	CP12 domain-containing protein...	[more]
AT3G62410.1	3.1e-14	49.3	CP12 domain-containing protein...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003823	Domain of unknown function CP12	PFAM	PF02672	CP12	coord: 79..146 score: 2.3
IPR003823	Domain of unknown function CP12	SMART	SM01093	CP12_2	coord: 78..148 score: 5.7
None	No IPR available	unknown	Coil	Coil	coord: 72..92 scor
None	No IPR available	PANTHER	PTHR33921	FAMILY NOT NAMED	coord: 62..148 score: 9.1
None	No IPR available	PANTHER	PTHR33921:SF3	CALVIN CYCLE PROTEIN CP12-3, CHLOROPLASTIC	coord: 62..148 score: 9.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071454	cellular response to anoxia
biological_process	GO:0015976	carbon utilization
biological_process	GO:0010431	seed maturation
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0009832	plant-type cell wall biogenesis
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006096	glycolytic process
biological_process	GO:0006094	gluconeogenesis
biological_process	GO:0030243	cellulose metabolic process
biological_process	GO:0016049	cell growth
biological_process	GO:0007127	meiosis I
biological_process	GO:0070417	cellular response to cold
biological_process	GO:0008152	metabolic process
biological_process	GO:0006468	protein phosphorylation
biological_process	GO:0009791	post-embryonic development
biological_process	GO:0006570	tyrosine metabolic process
biological_process	GO:0009733	response to auxin
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0035335	peptidyl-tyrosine dephosphorylation
biological_process	GO:0043407	negative regulation of MAP kinase activity
biological_process	GO:0016126	sterol biosynthetic process
biological_process	GO:0006310	DNA recombination
biological_process	GO:0070647	protein modification by small protein conjugation or removal
biological_process	GO:0006974	cellular response to DNA damage stimulus
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0019048	modulation by virus of host morphology or physiology
biological_process	GO:0042967	obsolete acyl-carrier-protein biosynthetic process
biological_process	GO:0009653	anatomical structure morphogenesis
biological_process	GO:0051276	chromosome organization
biological_process	GO:0003006	developmental process involved in reproduction
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0007033	vacuole organization
biological_process	GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0048193	Golgi vesicle transport
biological_process	GO:0007030	Golgi organization
biological_process	GO:0000902	cell morphogenesis
biological_process	GO:0007059	chromosome segregation
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0033043	regulation of organelle organization
biological_process	GO:0010264	myo-inositol hexakisphosphate biosynthetic process
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0022414	reproductive process
biological_process	GO:0010014	meristem initiation
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0009855	determination of bilateral symmetry
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0005983	starch catabolic process
biological_process	GO:0006470	protein dephosphorylation
biological_process	GO:0010075	regulation of meristem growth
biological_process	GO:0043085	positive regulation of catalytic activity
biological_process	GO:0046838	phosphorylated carbohydrate dephosphorylation
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0015991	ATP hydrolysis coupled proton transport
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0080153	negative regulation of reductive pentose-phosphate cycle
biological_process	GO:0034605	cellular response to heat
biological_process	GO:0009944	polarity specification of adaxial/abaxial axis
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0009630	gravitropism
biological_process	GO:0048868	pollen tube development
biological_process	GO:0009395	phospholipid catabolic process
biological_process	GO:0006687	glycosphingolipid metabolic process
biological_process	GO:0006651	diacylglycerol biosynthetic process
biological_process	GO:0006810	transport
biological_process	GO:0016311	dephosphorylation
biological_process	GO:0009264	deoxyribonucleotide catabolic process
biological_process	GO:0006486	protein glycosylation
biological_process	GO:0006816	calcium ion transport
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0044262	cellular carbohydrate metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0006950	response to stress
biological_process	GO:0006098	pentose-phosphate shunt
cellular_component	GO:0005681	spliceosomal complex
cellular_component	GO:0009506	plasmodesma
cellular_component	GO:0005777	peroxisome
cellular_component	GO:0005789	endoplasmic reticulum membrane
cellular_component	GO:0033179	proton-transporting V-type ATPase, V0 domain
cellular_component	GO:0005768	endosome
cellular_component	GO:0005802	trans-Golgi network
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0032991	protein-containing complex
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005622	intracellular
molecular_function	GO:0050308	sugar-phosphatase activity
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0047617	acyl-CoA hydrolase activity
molecular_function	GO:2001070	starch binding
molecular_function	GO:0008138	protein tyrosine/serine/threonine phosphatase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0005198	structural molecule activity
molecular_function	GO:0016151	nickel cation binding
molecular_function	GO:0005507	copper ion binding
molecular_function	GO:0015078	proton transmembrane transporter activity
molecular_function	GO:0031072	heat shock protein binding
molecular_function	GO:0051082	unfolded protein binding
molecular_function	GO:0004842	ubiquitin-protein transferase activity
molecular_function	GO:0030955	potassium ion binding
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0004535	poly(A)-specific ribonuclease activity
molecular_function	GO:0008080	N-acetyltransferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0004743	pyruvate kinase activity
molecular_function	GO:0000287	magnesium ion binding
molecular_function	GO:0016881	acid-amino acid ligase activity
molecular_function	GO:0004672	protein kinase activity
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004725	protein tyrosine phosphatase activity
molecular_function	GO:0008195	phosphatidate phosphatase activity
molecular_function	GO:0047874	dolichyldiphosphatase activity
molecular_function	GO:0008253	5'-nucleotidase activity
molecular_function	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity
molecular_function	GO:0016757	transferase activity, transferring glycosyl groups

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo08850	0.76	Barchart \| Table
Spo25230	0.75	Barchart \| Table
Spo14667	0.75	Barchart \| Table
Spo05135	0.73	Barchart \| Table
Spo22955	0.72	Barchart \| Table
Spo10940	0.72	Barchart \| Table
Spo07609	0.72	Barchart \| Table
Spo12376	0.72	Barchart \| Table
Spo14942	0.72	Barchart \| Table
Spo14980	0.71	Barchart \| Table
Spo22811	0.70	Barchart \| Table
Spo05402	0.70	Barchart \| Table
Spo03149	0.70	Barchart \| Table
Spo26789	0.70	Barchart \| Table
Spo13518	0.70	Barchart \| Table
Spo07291	0.70	Barchart \| Table
Spo22052	0.70	Barchart \| Table
Spo14084	0.69	Barchart \| Table
Spo12999	0.69	Barchart \| Table
Spo01858	0.69	Barchart \| Table
Spo00748	0.69	Barchart \| Table
Spo06797	0.69	Barchart \| Table
Spo12285	0.69	Barchart \| Table
Spo17578	0.69	Barchart \| Table
Spo10031	0.69	Barchart \| Table
Spo23507	0.68	Barchart \| Table
Spo16804	0.68	Barchart \| Table
Spo07802	0.68	Barchart \| Table
Spo08245	0.68	Barchart \| Table
Spo17940	0.68	Barchart \| Table
Spo23675	0.68	Barchart \| Table
Spo11961	0.68	Barchart \| Table
Spo24287	0.68	Barchart \| Table
Spo05073	0.68	Barchart \| Table
Spo20912	0.68	Barchart \| Table
Spo01925	0.68	Barchart \| Table
Spo02010	0.67	Barchart \| Table
Spo01261	0.67	Barchart \| Table
Spo01531	0.67	Barchart \| Table
Spo01885	0.67	Barchart \| Table
Spo03195	0.67	Barchart \| Table
Spo04985	0.67	Barchart \| Table
Spo05928	0.67	Barchart \| Table
Spo06004	0.67	Barchart \| Table
Spo09344	0.67	Barchart \| Table
Spo10011	0.67	Barchart \| Table
Spo12719	0.67	Barchart \| Table
Spo14826	0.67	Barchart \| Table
Spo18578	0.67	Barchart \| Table
Spo18694	0.67	Barchart \| Table
Spo28265	0.67	Barchart \| Table
Spo22396	0.66	Barchart \| Table
Spo15873	0.66	Barchart \| Table
Spo04082	0.66	Barchart \| Table
Spo02932	0.66	Barchart \| Table
Spo08339	0.66	Barchart \| Table
Spo00498	0.66	Barchart \| Table
Spo14537	0.66	Barchart \| Table
Spo16801	0.66	Barchart \| Table
Spo11660	0.66	Barchart \| Table
Spo09605	0.66	Barchart \| Table
Spo19445	0.66	Barchart \| Table
Spo06164	0.66	Barchart \| Table
Spo21600	0.66	Barchart \| Table
Spo10444	0.66	Barchart \| Table
Spo01841	0.65	Barchart \| Table
Spo17209	0.65	Barchart \| Table
Spo08970	0.65	Barchart \| Table
Spo25945	0.65	Barchart \| Table
Spo01706	0.65	Barchart \| Table
Spo06148	0.65	Barchart \| Table
Spo05093	0.65	Barchart \| Table
Spo02065	0.65	Barchart \| Table
Spo14661	0.65	Barchart \| Table
Spo11442	0.65	Barchart \| Table