Spo23112 (gene)

Overview
NameSpo23112
Typegene
OrganismSpinacia oleracea (Spinach)
Description30S ribosomal protein S17, chloroplastic
Locationchr4 : 120602578 .. 120603075 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTCTCTCTTTCTCTCTCCTCAAACCTCCTCTCTCCTCATCCAATCCCAACCCCTTCCTCCATGGCACCACCACCAAACTCTCTCTCCTCCCCTCATTCTCCGCCCTATCTCTCTCCTCCTCACCACCGTCCTCCTCCACAACCTACACCTTCCCAGTCATCAAAGCCATGAGATCAATGCAAGGCAAAGTCATCTGCGCCACCAATGACAAGACGGTTAATGTCGAAGTTGTTCGTCTCGCTCCGCACCCCAAATACAAGCGTCGGGTAAGGAAGAAGAAGAAGTACCAGGCCCATGACCCGGATAACCAGTTCAAAGTGGGTGATTGGGTTCAGCTTGACAAATGTCGACCCATTAGTAAAACCAAGACTTTTCTTGCTGTTGCTCCTGAAGGTAGGCAGAGTTCTGCAACTAGGCCCAAGCCTATTCAAGCTGCTTCTGATGAACTTGGTATTCCTCTTGAATCTCAGGTGGAAGGGGATAAGACTGTTTGA

mRNA sequence

ATGTCTCTCTCTTTCTCTCTCCTCAAACCTCCTCTCTCCTCATCCAATCCCAACCCCTTCCTCCATGGCACCACCACCAAACTCTCTCTCCTCCCCTCATTCTCCGCCCTATCTCTCTCCTCCTCACCACCGTCCTCCTCCACAACCTACACCTTCCCAGTCATCAAAGCCATGAGATCAATGCAAGGCAAAGTCATCTGCGCCACCAATGACAAGACGGTTAATGTCGAAGTTGTTCGTCTCGCTCCGCACCCCAAATACAAGCGTCGGGTAAGGAAGAAGAAGAAGTACCAGGCCCATGACCCGGATAACCAGTTCAAAGTGGGTGATTGGGTTCAGCTTGACAAATGTCGACCCATTAGTAAAACCAAGACTTTTCTTGCTGTTGCTCCTGAAGGTAGGCAGAGTTCTGCAACTAGGCCCAAGCCTATTCAAGCTGCTTCTGATGAACTTGGTATTCCTCTTGAATCTCAGGTGGAAGGGGATAAGACTGTTTGA

Coding sequence (CDS)

ATGTCTCTCTCTTTCTCTCTCCTCAAACCTCCTCTCTCCTCATCCAATCCCAACCCCTTCCTCCATGGCACCACCACCAAACTCTCTCTCCTCCCCTCATTCTCCGCCCTATCTCTCTCCTCCTCACCACCGTCCTCCTCCACAACCTACACCTTCCCAGTCATCAAAGCCATGAGATCAATGCAAGGCAAAGTCATCTGCGCCACCAATGACAAGACGGTTAATGTCGAAGTTGTTCGTCTCGCTCCGCACCCCAAATACAAGCGTCGGGTAAGGAAGAAGAAGAAGTACCAGGCCCATGACCCGGATAACCAGTTCAAAGTGGGTGATTGGGTTCAGCTTGACAAATGTCGACCCATTAGTAAAACCAAGACTTTTCTTGCTGTTGCTCCTGAAGGTAGGCAGAGTTCTGCAACTAGGCCCAAGCCTATTCAAGCTGCTTCTGATGAACTTGGTATTCCTCTTGAATCTCAGGTGGAAGGGGATAAGACTGTTTGA

Protein sequence

MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23112.1Spo23112.1mRNA


Homology
[Close]
BLAST of Spo23112.1 vs. NCBI nr
Match: gi|902229448|gb|KNA21507.1| (hypothetical protein SOVF_042540 [Spinacia oleracea])

HSP 1 Score: 321.2 bits (822), Expect = 1.000e-84
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 

		  

Query: 1   MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRS 60
           MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRS
Sbjct: 1   MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRS 60

Query: 61  MQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPI 120
           MQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPI
Sbjct: 61  MQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPI 120

Query: 121 SKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV 166
           SKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV
Sbjct: 121 SKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV 165
[Close]
BLAST of Spo23112.1 vs. NCBI nr
Match: gi|731359542|ref|XP_010691340.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 228.4 bits (581), Expect = 9.100e-57
Identity = 124/166 (74.70%), Postives = 143/166 (86.14%), Query Frame = 1 

		  

Query: 1   MSLSFSLLKPPLSSSNPNPFLHGTTT-KLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMR 60
           MSL+FSLLKPPLS+    PF+HG++T K SLLPSFS LSLSS+PP S+TT +FP+IKAMR
Sbjct: 1   MSLTFSLLKPPLST----PFIHGSSTSKFSLLPSFSTLSLSSTPPPSTTT-SFPIIKAMR 60

Query: 61  SMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRP 120
           SMQG+VICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGD VQL+KCRP
Sbjct: 61  SMQGRVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDLVQLEKCRP 120

Query: 121 ISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV 166
           ISKTKTFLAV P+GR+ ++T+    +    ELGIPL+SQ   DK+V
Sbjct: 121 ISKTKTFLAVIPQGRKDNSTK----EGVESELGIPLQSQQLEDKSV 157
[Close]
BLAST of Spo23112.1 vs. NCBI nr
Match: gi|870848536|gb|KMT00825.1| (hypothetical protein BVRB_9g221010 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 167.5 bits (423), Expect = 1.900e-38
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 1 

		  

Query: 58  MRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKC 117
           MRSMQG+VICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGD VQL+KC
Sbjct: 1   MRSMQGRVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDLVQLEKC 60

Query: 118 RPISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV 166
           RPISKTKTFLAV P+GR+ ++T+    +    ELGIPL+SQ   DK+V
Sbjct: 61  RPISKTKTFLAVIPQGRKDNSTK----EGVESELGIPLQSQQLEDKSV 104
[Close]
BLAST of Spo23112.1 vs. NCBI nr
Match: gi|225442609|ref|XP_002284468.1| (PREDICTED: 30S ribosomal protein S17, chloroplastic [Vitis vinifera])

HSP 1 Score: 162.5 bits (410), Expect = 6.100e-37
Identity = 93/140 (66.43%), Postives = 108/140 (77.14%), Query Frame = 1 

		  

Query: 19  PFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRSMQGKVICATNDKTVNVEV 78
           PFLHG++  LSLL   S+ SL+S PP  +     P I+AM+SMQG+V+CAT+DKTV VEV
Sbjct: 12  PFLHGSSN-LSLLSKPSSTSLASPPPPPTF---LPPIRAMKSMQGRVVCATSDKTVAVEV 71

Query: 79  VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAVAPEGRQSSA 138
           VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGD VQL+K RPISKTKTF+A+    R    
Sbjct: 72  VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVAIPVPNR---- 131

Query: 139 TRPKPIQAASDELGIPLESQ 159
            R K  +AA+ EL IPLESQ
Sbjct: 132 NRAKSQEAAAGELEIPLESQ 143
[Close]
BLAST of Spo23112.1 vs. NCBI nr
Match: gi|297743261|emb|CBI36128.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 162.5 bits (410), Expect = 6.100e-37
Identity = 93/140 (66.43%), Postives = 108/140 (77.14%), Query Frame = 1 

		  

Query: 19  PFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRSMQGKVICATNDKTVNVEV 78
           PFLHG++  LSLL   S+ SL+S PP  +     P I+AM+SMQG+V+CAT+DKTV VEV
Sbjct: 56  PFLHGSSN-LSLLSKPSSTSLASPPPPPTF---LPPIRAMKSMQGRVVCATSDKTVAVEV 115

Query: 79  VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAVAPEGRQSSA 138
           VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGD VQL+K RPISKTKTF+A+    R    
Sbjct: 116 VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVAIPVPNR---- 175

Query: 139 TRPKPIQAASDELGIPLESQ 159
            R K  +AA+ EL IPLESQ
Sbjct: 176 NRAKSQEAAAGELEIPLESQ 187
[Close]
BLAST of Spo23112.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RRR0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_042540 PE=3 SV=1)

HSP 1 Score: 321.2 bits (822), Expect = 7.200e-85
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 1 

		  

Query: 1   MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRS 60
           MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRS
Sbjct: 1   MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRS 60

Query: 61  MQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPI 120
           MQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPI
Sbjct: 61  MQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPI 120

Query: 121 SKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV 166
           SKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV
Sbjct: 121 SKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV 165
[Close]
BLAST of Spo23112.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BHE2_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_9g221010 PE=3 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.300e-38
Identity = 84/108 (77.78%), Postives = 94/108 (87.04%), Query Frame = 1 

		  

Query: 58  MRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKC 117
           MRSMQG+VICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGD VQL+KC
Sbjct: 1   MRSMQGRVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDLVQLEKC 60

Query: 118 RPISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQVEGDKTV 166
           RPISKTKTFLAV P+GR+ ++T+    +    ELGIPL+SQ   DK+V
Sbjct: 61  RPISKTKTFLAVIPQGRKDNSTK----EGVESELGIPLQSQQLEDKSV 104
[Close]
BLAST of Spo23112.1 vs. UniProtKB/TrEMBL
Match: D7U0I2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_09s0002g04330 PE=3 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 4.300e-37
Identity = 93/140 (66.43%), Postives = 108/140 (77.14%), Query Frame = 1 

		  

Query: 19  PFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRSMQGKVICATNDKTVNVEV 78
           PFLHG++  LSLL   S+ SL+S PP  +     P I+AM+SMQG+V+CAT+DKTV VEV
Sbjct: 56  PFLHGSSN-LSLLSKPSSTSLASPPPPPTF---LPPIRAMKSMQGRVVCATSDKTVAVEV 115

Query: 79  VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAVAPEGRQSSA 138
           VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGD VQL+K RPISKTKTF+A+    R    
Sbjct: 116 VRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDVVQLEKSRPISKTKTFVAIPVPNR---- 175

Query: 139 TRPKPIQAASDELGIPLESQ 159
            R K  +AA+ EL IPLESQ
Sbjct: 176 NRAKSQEAAAGELEIPLESQ 187
[Close]
BLAST of Spo23112.1 vs. UniProtKB/TrEMBL
Match: A0A0D2ULD7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G135000 PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.100e-36
Identity = 98/160 (61.25%), Postives = 115/160 (71.88%), Query Frame = 1 

		  

Query: 1   MSLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSS--TTYTFPVIKAM 60
           MS++FSL    LSS    PFLHG+T+    LP  S    +SSPP     +    P I+AM
Sbjct: 1   MSITFSLQSLKLSS----PFLHGSTS----LPLLS--KPNSSPPHQPLRSPAFLPPIRAM 60

Query: 61  RSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCR 120
           +SMQG+V+CATNDKTV VEVVRLAPHPKYKRRVRKKKK+QAHDPDNQFKVGD+VQL+K R
Sbjct: 61  KSMQGRVVCATNDKTVAVEVVRLAPHPKYKRRVRKKKKFQAHDPDNQFKVGDYVQLEKSR 120

Query: 121 PISKTKTFLAVAPEGRQSSATRPKPIQAASDELGIPLESQ 159
           PISKTKTF+AVA   R       K  +  + ELGIPLES+
Sbjct: 121 PISKTKTFIAVAVPSRNG-----KQEKEEAGELGIPLESK 145
[Close]
BLAST of Spo23112.1 vs. UniProtKB/TrEMBL
Match: A0A0A0K952_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G446990 PE=3 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 3.600e-36
Identity = 100/163 (61.35%), Postives = 117/163 (71.78%), Query Frame = 1 

		  

Query: 4   SFSLLK-PPLSS----SNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAM 63
           S SLL+ PP+ S    S  + FLHG+T  LS L   S  S SSSP  S T    P I+AM
Sbjct: 7   SSSLLQIPPVQSLKKLSISSSFLHGSTP-LSFL---SKPSSSSSPFPSQTPNFLPSIRAM 66

Query: 64  RSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCR 123
           RS+QG+V+CATNDKTV VEVVRLAPHPKYKRR+R KKKYQAHDPDNQF+VGD+V+L+KCR
Sbjct: 67  RSLQGRVVCATNDKTVAVEVVRLAPHPKYKRRIRIKKKYQAHDPDNQFQVGDFVELEKCR 126

Query: 124 PISKTKTFLAVAPEGRQSSATRPKPIQAA-SDELGIPLESQVE 161
           PISK KTFLA+    R S   + K ++     ELGIPLESQ E
Sbjct: 127 PISKMKTFLAIPVPARNS---KKKAVEGGEGGELGIPLESQQE 162
[Close]
BLAST of Spo23112.1 vs. ExPASy Swiss-Prot
Match: RR17_ARATH (30S ribosomal protein S17, chloroplastic OS=Arabidopsis thaliana GN=RPS17 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.800e-34
Identity = 90/158 (56.96%), Postives = 110/158 (69.62%), Query Frame = 1 

		  

Query: 2   SLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRSM 61
           SL+ SL    LSS    PF HG+T         S+LS  +S P+       PVI+AM++M
Sbjct: 5   SLTSSLQALKLSS----PFAHGSTP-------LSSLSKPNSFPNHRMPALVPVIRAMKTM 64

Query: 62  QGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPIS 121
           QG+V+CAT+DKTV VEVVRLAPHPKYKRRVR KKKYQAHDPDNQFKVGD V+L+K RPIS
Sbjct: 65  QGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPIS 124

Query: 122 KTKTFLAVAPEGRQSSATRPKPIQAASDE-LGIPLESQ 159
           KTK+F+A+    R +     +  +A  DE LG+PLESQ
Sbjct: 125 KTKSFVALPVIARAA-----RKAEAGGDELLGLPLESQ 146
[Close]
BLAST of Spo23112.1 vs. ExPASy Swiss-Prot
Match: RR17_PEA (30S ribosomal protein S17, chloroplastic (Fragment) OS=Pisum sativum GN=RPS17 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 6.500e-31
Identity = 77/130 (59.23%), Postives = 92/130 (70.77%), Query Frame = 1 

		  

Query: 37  LSLSSSPPSSSTTYT------FPVIKAMRSMQGKVICATNDKTVNVEVVRLAPHPKYKRR 96
           L+  S+P SS  T T      FP IKAM++M+GKV+CA+ +KTV VEV RLAPHPKY++R
Sbjct: 11  LNRFSNPISSPQTQTQTRSLPFPAIKAMKTMEGKVVCASGNKTVAVEVTRLAPHPKYQKR 70

Query: 97  VRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAVAPEGRQSSATRPKPIQAASDE 156
           +R KKKYQAHDP+N FKVGD VQL K RPISK KTFLAV    R+S          +S E
Sbjct: 71  IRLKKKYQAHDPENDFKVGDIVQLLKTRPISKKKTFLAVPAPSRKSKKA------GSSGE 130

Query: 157 LGIPLESQVE 161
           LGIPL+SQ E
Sbjct: 131 LGIPLQSQQE 134
[Close]
BLAST of Spo23112.1 vs. ExPASy Swiss-Prot
Match: RR17_MAIZE (30S ribosomal protein S17, chloroplastic OS=Zea mays GN=RPS17 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.000e-23
Identity = 67/125 (53.60%), Postives = 81/125 (64.80%), Query Frame = 1 

		  

Query: 30  LLPSFSALSLSSSPPSSSTTYTFPV--IKAMRSMQGKVICATNDKTVNVEVVRLAPHPKY 89
           LL S   +S+S  PP  S+    P   I+A R + G+V+    DKTV VEVVRLAPHPKY
Sbjct: 2   LLLSSPFVSVSPPPPPLSSHGARPALRIEAARQLTGRVVTTKADKTVGVEVVRLAPHPKY 61

Query: 90  KRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPISKTKTFLAV--APEGRQSSATRPKPIQ 149
           KRR R KKKYQAHDPDNQFKVGD V+L   RPISKTK FLA+   P   +  +    P+Q
Sbjct: 62  KRRERIKKKYQAHDPDNQFKVGDVVELQPSRPISKTKHFLAIPLPPRDTRRKSQLLPPLQ 121

Query: 150 AASDE 151
           +  D+
Sbjct: 122 SDDDQ 126
[Close]
BLAST of Spo23112.1 vs. ExPASy Swiss-Prot
Match: RR17_ORYSJ (30S ribosomal protein S17, chloroplastic OS=Oryza sativa subsp. japonica GN=RPS17 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 8.600e-23
Identity = 58/96 (60.42%), Postives = 69/96 (71.88%), Query Frame = 1 

		  

Query: 55  IKAMRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQL 114
           I+A + + G+V+    DKTV VEVVRLAPHPKYKRR R KKKYQAHDPDNQFKVGD V+L
Sbjct: 34  IQAAKQLTGRVVTTKADKTVGVEVVRLAPHPKYKRRERIKKKYQAHDPDNQFKVGDVVEL 93

Query: 115 DKCRPISKTKTFLAV--APEGRQSSATRPKPIQAAS 149
            + RPISKTK FLAV   P   +  +    P+Q+ S
Sbjct: 94  RRSRPISKTKHFLAVPLPPRDTRRKSQLLPPLQSQS 129
[Close]
BLAST of Spo23112.1 vs. ExPASy Swiss-Prot
Match: RS17_RHOS1 (30S ribosomal protein S17 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 4.700e-13
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1 

		  

Query: 59  RSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCR 118
           R +QG V    N++TV V V R   HP  K+ VR  KKY+AHDP+NQFKVGD V++++C 
Sbjct: 4   RILQGTVTSDKNEQTVTVLVERRFKHPLLKKTVRLSKKYRAHDPENQFKVGDIVRIEECA 63

Query: 119 PISKTKTFLAV 130
           PISKTK +  V
Sbjct: 64  PISKTKRWKVV 74
[Close]
BLAST of Spo23112.1 vs. TAIR (Arabidopsis)
Match: AT1G79850.1 (ribosomal protein S17)

HSP 1 Score: 146.4 bits (368), Expect = 1.600e-35
Identity = 90/158 (56.96%), Postives = 110/158 (69.62%), Query Frame = 1 

		  

Query: 2   SLSFSLLKPPLSSSNPNPFLHGTTTKLSLLPSFSALSLSSSPPSSSTTYTFPVIKAMRSM 61
           SL+ SL    LSS    PF HG+T         S+LS  +S P+       PVI+AM++M
Sbjct: 5   SLTSSLQALKLSS----PFAHGSTP-------LSSLSKPNSFPNHRMPALVPVIRAMKTM 64

Query: 62  QGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKCRPIS 121
           QG+V+CAT+DKTV VEVVRLAPHPKYKRRVR KKKYQAHDPDNQFKVGD V+L+K RPIS
Sbjct: 65  QGRVVCATSDKTVAVEVVRLAPHPKYKRRVRMKKKYQAHDPDNQFKVGDVVRLEKSRPIS 124

Query: 122 KTKTFLAVAPEGRQSSATRPKPIQAASDE-LGIPLESQ 159
           KTK+F+A+    R +     +  +A  DE LG+PLESQ
Sbjct: 125 KTKSFVALPVIARAA-----RKAEAGGDELLGLPLESQ 146
[Close]
BLAST of Spo23112.1 vs. TAIR (Arabidopsis)
Match: AT1G49400.1 (Nucleic acid-binding, OB-fold-like protein)

HSP 1 Score: 47.8 bits (112), Expect = 7.700e-6
Identity = 32/90 (35.56%), Postives = 49/90 (54.44%), Query Frame = 1 

		  

Query: 58  MRSMQGKVICATNDKTVNVEVVRLAPHPKYKRRVRKKKKYQAHDPDNQFKVGDWVQLDKC 117
           M+ + G V+     K+V V V RL  +  Y R V++  K+ AHD  +   +GD V+LD  
Sbjct: 1   MKPVIGTVVSNKMQKSVVVAVDRLFHNKIYNRYVKRTSKFMAHDDKDACNIGDRVKLDPS 60

Query: 118 RPISKTKTFLAVAPEGRQSSATRPKPIQAA 148
           RP+SK K ++ VA   +++    PK   AA
Sbjct: 61  RPLSKNKHWI-VAEIIKKARIYSPKAAAAA 89
The following BLAST results are available for this feature:
BLAST of Spo23112.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902229448|gb|KNA21507.1|1.0e-84100.hypothetical protein SOVF_0425... [more]
gi|731359542|ref|XP_010691340.1|9.1e-5774.7PREDICTED: 30S ribosomal prote... [more]
gi|870848536|gb|KMT00825.1|1.9e-3877.7hypothetical protein BVRB_9g22... [more]
gi|225442609|ref|XP_002284468.1|6.1e-3766.4PREDICTED: 30S ribosomal prote... [more]
gi|297743261|emb|CBI36128.3|6.1e-3766.4unnamed protein product [Vitis... [more]
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BLAST of Spo23112.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RRR0_SPIOL7.2e-85100.Uncharacterized protein OS=Spi... [more]
A0A0J8BHE2_BETVU1.3e-3877.7Uncharacterized protein OS=Bet... [more]
D7U0I2_VITVI4.3e-3766.4Putative uncharacterized prote... [more]
A0A0D2ULD7_GOSRA2.1e-3661.2Uncharacterized protein OS=Gos... [more]
A0A0A0K952_CUCSA3.6e-3661.3Uncharacterized protein OS=Cuc... [more]
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BLAST of Spo23112.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RR17_ARATH2.8e-3456.930S ribosomal protein S17, chl... [more]
RR17_PEA6.5e-3159.230S ribosomal protein S17, chl... [more]
RR17_MAIZE1.0e-2353.630S ribosomal protein S17, chl... [more]
RR17_ORYSJ8.6e-2360.430S ribosomal protein S17, chl... [more]
RS17_RHOS14.7e-1353.530S ribosomal protein S17 OS=R... [more]
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BLAST of Spo23112.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT1G79850.11.6e-3556.9ribosomal protein S17[more]
AT1G49400.17.7e-635.5Nucleic acid-binding, OB-fold-... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000266Ribosomal protein S17/S11PRODOMPD001295coord: 59..129
score: 2.0
IPR000266Ribosomal protein S17/S11PRINTSPR00973RIBOSOMALS17coord: 119..126
score: 6.0E-10coord: 77..100
score: 6.0E-10coord: 109..119
score: 6.0
IPR000266Ribosomal protein S17/S11HAMAPMF_01345_BRibosomal_S17_Bcoord: 56..134
score: 18
IPR000266Ribosomal protein S17/S11PANTHERPTHR1074440S RIBOSOMAL PROTEIN S11 FAMILY MEMBERcoord: 53..151
score: 5.6
IPR000266Ribosomal protein S17/S11PFAMPF00366Ribosomal_S17coord: 63..127
score: 1.3
IPR012340Nucleic acid-binding, OB-foldGENE3D2.40.50.140coord: 58..130
score: 1.1
IPR012340Nucleic acid-binding, OB-foldunknownSSF50249Nucleic acid-binding proteinscoord: 58..130
score: 2.7
IPR019979Ribosomal protein S17, conserved sitePROSITEPS00056RIBOSOMAL_S17coord: 109..121
scor
NoneNo IPR availablePANTHERPTHR10744:SF730S RIBOSOMAL PROTEIN S17, CHLOROPLASTICcoord: 53..151
score: 5.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032544 plastid translation
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0019752 carboxylic acid metabolic process
biological_process GO:0065007 biological regulation
biological_process GO:0055085 transmembrane transport
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0045454 cell redox homeostasis
biological_process GO:0044248 cellular catabolic process
biological_process GO:0048653 anther development
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006364 rRNA processing
biological_process GO:0010114 response to red light
biological_process GO:0010218 response to far red light
biological_process GO:0009637 response to blue light
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0009056 catabolic process
biological_process GO:1901575 organic substance catabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010468 regulation of gene expression
biological_process GO:0006771 riboflavin metabolic process
biological_process GO:0019497 hexachlorocyclohexane metabolic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0009627 systemic acquired resistance
biological_process GO:0000302 response to reactive oxygen species
biological_process GO:0032880 regulation of protein localization
biological_process GO:0031347 regulation of defense response
biological_process GO:0044238 primary metabolic process
biological_process GO:0006508 proteolysis
biological_process GO:0009657 plastid organization
biological_process GO:0010206 photosystem II repair
biological_process GO:0006950 response to stress
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0009725 response to hormone
biological_process GO:0001101 response to acid chemical
biological_process GO:0010304 PSII associated light-harvesting complex II catabolic process
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0042793 plastid transcription
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006120 mitochondrial electron transport, NADH to ubiquinone
biological_process GO:0009853 photorespiration
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0006486 protein glycosylation
biological_process GO:1902600 proton transmembrane transport
biological_process GO:0051788 response to misfolded protein
biological_process GO:0006814 sodium ion transport
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006353 DNA-templated transcription, termination
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0019344 cysteine biosynthetic process
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0006412 translation
biological_process GO:0042744 hydrogen peroxide catabolic process
biological_process GO:0009902 chloroplast relocation
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0016117 carotenoid biosynthetic process
cellular_component GO:0005747 mitochondrial respiratory chain complex I
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0000312 plastid small ribosomal subunit
cellular_component GO:0009543 chloroplast thylakoid lumen
cellular_component GO:0009507 chloroplast
cellular_component GO:0000311 plastid large ribosomal subunit
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0009533 chloroplast stromal thylakoid
cellular_component GO:0022626 cytosolic ribosome
cellular_component GO:0005634 nucleus
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0005840 ribosome
cellular_component GO:0005622 intracellular
molecular_function GO:0051539 4 iron, 4 sulfur cluster binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0051537 2 iron, 2 sulfur cluster binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0015297 antiporter activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0015038 glutathione disulfide oxidoreductase activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0015035 protein disulfide oxidoreductase activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0008266 poly(U) RNA binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0048038 quinone binding
molecular_function GO:0003993 acid phosphatase activity
RNA-Seq Expression