Spo23179 (gene)

Overview
NameSpo23179
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
Locationchr4 : 52638878 .. 52641235 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTGACATTGTAATTGGCCTATTTTGTGGGTCCCTTTCCTTTTTTATGGTTAGGTTTTCTTTGATTTTGTTAAATTGTTAAATGTATTTTGTAAAATGTAAAATTATTGTTTGAAAATGATTCAGATACTATTTGCTTTTCAAACAGTGACTAATTAGCTGATTAATTAAGTATTTCTAAGGGGGCGTTTGGTTGGGGGTATTCTGGAAAGGGAAAGGGGATGGGCTGAAATGATACCCTTTGTTGTTGTTTGTTAGACCATTTTCGTGATTCCCTTTACCCCTTTTTATTTTTGGGTTCACCCAAAATTGCTCTAAGTTGATTACACCCCCCCCCAAGGGTTTCCCATTCTGATTCCCCACTTCATTTCCCCACCCTCCTTCTCTCTCCTCTAGCCCAGAACTTTAACAACAGCACCAAGGGAAGATGCCACACTCACGTTGCCGGCGACTACTGCTGTGAAAATCCGTCCATTAACTCCGATCACTTGCTTATCTCCGGCCGCCGTCGAGGTATGTTCCGTCTCTTCCTTTCTCTCTCCTCTTTCTCTCCTTTTCTTTCGTTTTGCGTTCTTAATCCGACCTCCGGCGTGTGACCTCGACAATTTGCACTTAATTTTTTATTGGTTTATATATTTTTCAATTTTCCACCTGATTTGTAGCCCAAAAGATCCATAAATTCAAATTACAAATTTATAAATTCACTTTTTTTGTTGACAGCCTATAAATTCACTATACTACGAGGTTTCTCTAATACGGAGGGATTTTAGCATAGCAGAACAATTTCAAAGCAGAAGTACAACAGACCTTTGAAGCAGCAACAATGGCGAGCACAAAAGTTCAAAGGATTATGGCCCAGCCTAAATTCACTGTCTTTTCACTTCCATTCTCAATTTTTGTGTTTTTATTCTTCTTCTTCTTCAATTTATAATCTAACTCATCTATGTTGTTAATTGGGTTTGATAATAGATCCTATAATACCGCAGATAAATTGAATAAAGGAAAGCCATATATTGTAAAGTTAATTGTGTTCTTAATTGCTTTGTTAAATGCTACGAATGTCTTATATGTCTGTTCAATGAAAAAATTCACAATAAAAGTCTATTATGGTGATTAGCTGTCATATATTCTTCTTCTTCTTTTTTTAAAAAAAATTAAGAAGAATTGAGGAAGAAAATTTAATCATATTACTTGTATGTTTTAAACAGGTTCTTCATAAAGACATGTTTATTAATAAATTATACATTTGATTCCTTGGTTTGAACCAAACAGCCACAAAGGGAATCAGGGTGTATTTCATTCCGTTTCTGGGACATACCCAAACAGGTAGGGGGAATCAGGGTCATTCCATTCCTTTCTCTTTGATTCACTTTCTGCATTCCATTCCGTTTACCCTGCGCGAACCAAACACACCCTAAAAGTAATTAGCCCGCTTCTAATTAATTTTGCATCTTTGCCCTGAAACCCTGCCTCAGGAGGATAGGAGCAGCGATAAAAGGGGAGAGGGCAGTGGCAGAGGAGGAGGGAGGTTGCAGTAGAAGGTGGTCAGCGAACGAGAATAAACCATTGATGGTCGGTGAAGGTGGGTTGTTGACGGCACGATAAGGTAAGGGAAGTAGTGAGGTGTTGTTCCCAAACTTCTCAGGCAGTGCTCTTAACTTCCCTGAAATCTTGAAGAAGAACGATAACCTCCGCTTAAGATCAATAGGTTACCGAAATCCGACCTGAAAATGGCGGGAACCGAATCAACAAATAGTTATATGCCTCCCAAGGCGGCGTTGATGAAGAAACGCGGCAAACTCGCCGGTAATGCCCTAGGAAACCAATTCTTTGCCTCCCAAGGCGGCATTGGTAGTCTCTTCAACCTTCCTAACGAAGCCGGCCGGAAGTACGAGTTTATTTGCAGCACCACTCCCTCATACCACCACTACTTTAGGAATCGACGAAGGAGTGTGAAAGTTGTCGGAGCCGGCGAACAGGGAAGGGGAATTCGATGTAGAGGTAGAGAGAGGAGGCGGAGAAGCCACCGAGCGAGGCATGGAGTTGAGCAGAGCAGAGGAGTTGAAGACAAAGTTGACTTTTGTCGGAACTGGCTTTCGGCAACTATTTCGGTGATGGATTTGCAAGGAATGCGACCGGAGAGGAACCAGTCCGGGACTGGACAAGAGAGAGTTAGCTTTTGGGTGAAATAGATGTTGGTAGAGTAAAAGCTTTTTTTTACTATGTCTATAATTAAAGTTGGGCATTACCTAATACTCGTACATTTTATATATATTATATAAACTCGGAAACTACTATCATTGTTGTTCATAAACGACTTGAAATAAAATTGCCATGGTTTTTATTTCACTCCTAT

mRNA sequence

ATGTGTGACATTCCCAGAACTTTAACAACAGCACCAAGGGAAGATGCCACACTCACGTTGCCGGCGACTACTGCTGTGAAAATCCGTCCATTAACTCCGATCACTTGCTTATCTCCGGCCGCCGTCGAGCCTATAAATTCACTATACTACGAGGTTTCTCTAATACGGAGGGATTTTAGCATAGCAGAACAATTTCAAAGCAGAAGTACAACAGACCTTTGAAGCAGCAACAATGGCGAGCACAAAAGTTCAAAGGATTATGGCCCAGCCTAAATTCACTGTTCTTCATAAAGACATGTTTATTAATAAATTATACATTTGATTCCTTGGTTTGAACCAAACAGCCACAAAGGGAATCAGGGTGTATTTCATTCCGTTTCTGGGACATACCCAAACAGGAGGATAGGAGCAGCGATAAAAGGGGAGAGGGCAGTGGCAGAGGAGGAGGGAGGTTGCAGTAGAAGGTGGTCAGCGAACGAGAATAAACCATTGATGGTCGGTGAAGGTGGGTTGTTGACGGCACGATAAGGTAAGGGAAGTAGTGAGGTGTTGTTCCCAAACTTCTCAGGCAGTGCTCTTAACTTCCCTGAAATCTTGAAGAAGAACGATAACCTCCGCTTAAGATCAATAGGTTACCGAAATCCGACCTGAAAATGGCGGGAACCGAATCAACAAATAGTTATATGCCTCCCAAGGCGGCGTTGATGAAGAAACGCGGCAAACTCGCCGGTAATGCCCTAGGAAACCAATTCTTTGCCTCCCAAGGCGGCATTGGTAGTCTCTTCAACCTTCCTAACGAAGCCGGCCGGAAGTACGAGTTTATTTGCAGCACCACTCCCTCATACCACCACTACTTTAGGAATCGACGAAGGAGTGTGAAAGTTGTCGGAGCCGGCGAACAGGGAAGGGGAATTCGATGTAGAGGTAGAGAGAGGAGGCGGAGAAGCCACCGAGCGAGGCATGGAGTTGAGCAGAGCAGAGGAGTTGAAGACAAAGTTGACTTTTGTCGGAACTGGCTTTCGGCAACTATTTCGGTGATGGATTTGCAAGGAATGCGACCGGAGAGGAACCAGTCCGGGACTGGACAAGAGAGAGTTAGCTTTTGGGTGAAATAGATGTTGGTAGAGTAAAAGCTTTTTTTTACTATGTCTATAATTAAAGTTGGGCATTACCTAATACTCGTACATTTTATATATATTATATAAACTCGGAAACTACTATCATTGTTGTTCATAAACGACTTGAAATAAAATTGCCATGGTTTTTATTTCACTCCTAT

Coding sequence (CDS)

ATGTGTGACATTCCCAGAACTTTAACAACAGCACCAAGGGAAGATGCCACACTCACGTTGCCGGCGACTACTGCTGTGAAAATCCGTCCATTAACTCCGATCACTTGCTTATCTCCGGCCGCCGTCGAGCCTATAAATTCACTATACTACGAGGTTTCTCTAATACGGAGGGATTTTAGCATAGCAGAACAATTTCAAAGCAGAAGTACAACAGACCTTTGA

Protein sequence

MCDIPRTLTTAPREDATLTLPATTAVKIRPLTPITCLSPAAVEPINSLYYEVSLIRRDFSIAEQFQSRSTTDL
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23179.1Spo23179.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo23179.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23179.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23179.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23179.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0016310 phosphorylation
biological_process GO:0046835 carbohydrate phosphorylation
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0046939 nucleotide phosphorylation
biological_process GO:0006227 dUDP biosynthetic process
biological_process GO:0006235 dTTP biosynthetic process
biological_process GO:0006233 dTDP biosynthetic process
biological_process GO:0046396 D-galacturonate metabolic process
biological_process GO:0006012 galactose metabolic process
biological_process GO:0048868 pollen tube development
biological_process GO:0009395 phospholipid catabolic process
biological_process GO:0006687 glycosphingolipid metabolic process
biological_process GO:0006651 diacylglycerol biosynthetic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0009117 nucleotide metabolic process
biological_process GO:0019509 L-methionine salvage from methylthioadenosine
biological_process GO:0006810 transport
biological_process GO:0043631 RNA polyadenylation
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009987 cellular process
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0071369 cellular response to ethylene stimulus
biological_process GO:0071732 cellular response to nitric oxide
biological_process GO:0071281 cellular response to iron ion
cellular_component GO:0005654 nucleoplasm
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005634 nucleus
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0016020 membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0005622 intracellular
molecular_function GO:0047912 galacturonokinase activity
molecular_function GO:0004335 galactokinase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0047874 dolichyldiphosphatase activity
molecular_function GO:0005515 protein binding
molecular_function GO:0009041 uridylate kinase activity
molecular_function GO:0004798 thymidylate kinase activity
molecular_function GO:0008195 phosphatidate phosphatase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0046522 S-methyl-5-thioribose kinase activity
molecular_function GO:0042802 identical protein binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0004652 polynucleotide adenylyltransferase activity
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0043565 sequence-specific DNA binding
RNA-Seq Expression