Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACCAAGCAGACCACAGAAGGCAGAAGGAAGCACAGCAGCAACACTATAAAACCTGCAAACAGCTCAGCAACCAACCACAACAGAAACAACTGACTGCAACAACAGAACAAAACAGCAGCAAACACTCATCCATGTGCATATTTGCACTGTCCAGTAATCAAACGTACTTGTAATCACATACTTAATTTTAATTAAAAACATCAATGTGCGTATTTGCACTGTCCAATAATCAAACTAGTTAAGAACATACCAAAATAAAAATAGGATCCTATATTATATATCCATACATCAAATTTTTGTCTTAACAAATCACACTAGAAATAAAAATAACTTATTTCGTTCCTTTAACATCAAAGAACTGTTGGTTCCTAAATCCCCGTGATTGAGATCGGAGCTTCATATCTTGATCTAATTGTTACCTTTGCCACCTGAATCATCATTAATCTACACATAAAAAAAATTATGTCATATTTGTGAAATGTAAAAAGCATTATAACACTATTTTGGAATAACCAAAAAATCACTATATAAGAAGTCATCTTATATAGTCTCACAGGTATATGTTCATTTCACTTCAGGTATGATCAACAAAATCAAGAAAATCACTATATGTATAATCTGTTCATTACATTTCAGGTATTACTCTCTCTAGTCTCTTTCCTTTTTTTTTATTTTTATTTTTTATGATTACGAGTTTTTCTTGATGTTTTGCGGTTGAATGCAATATTTTATGCACCAGATATAGTGTGTGCTGGGCAGGATGACCAAACATTGCCTTCAATCCCCATTACTCCTATTGAGGAAGAAGATCAACCAGATCCCTCGCCTGATTCTATTGCTTGTCCCAGTGCTACTACTAAGCCATACCCGTTGGTGGCCCAAGGTGGGACATTGGCTGCTGGAGTAGCAGGTTGTGGTCAAGCAGATGCATTAAAAGCTGCTCTTACTGCTGTGGCGAAGAGCAATGAGCAGATTGACCACAACCTGCTTGTAAAAATTCTAAGTAATCCGACAATTTTAGAACAGTTAGTTAGGCATCAAGGTCCTCAGAGTATCCCCAAGCCTTTATCTTCTGGAGCACCTGTGTACAGGATGCATACACCAGCTCCTCCTCCTCCTCAGTATAATAATATGGAAACAGGATCATCCTCATCCCCAATGATGATGTCAAATGGGTTAGTGTACCCGTATACTAATGGTACTGGACCTATGACCCATCAGCAATCAATCCCACCGCTCTCTATACAGTCTGGTTCTGGTTCTCAAATGAAGGACCTCAACTACTACAAGAACTTGATTCACCAACATGGAGGAGAAAGGCAAGGCGAGCCTCAACCTCAACCTCAAGCTCAACCTCCATTTTCAACCCATCCCATTCCCATCCATCATTCAGGAATAATAGATCAAGAAGTAGATAATTCAAAACCAAGGGATGCAAAACATAAGATTATGAAGCCTTGTATTTATTTCAATAGTTCAAAAGGTTGCAGACATGGTGCGAATTCTATTTATCAGCATGACATGTCGCTCCAGCAACGGGTTAGTAGCATCTCAGAAATGCAGAGTGCAAAGAGAATGAAGATGGATAGAGAGATTAGAGGACCACAGTCATACATTTAA ATGCACCAAGCAGACCACAGAAGGCAGAAGGAAGCACAGCAGCAACACTATAAAACCTGCAAACAGCTCAGCAACCAACCACAACAGAAACAACTGACTGCAACAACAGAACAAAACAGCAGCAAACACTCATCCATGTGCATATTTGCACTGTCCAATATAGTGTGTGCTGGGCAGGATGACCAAACATTGCCTTCAATCCCCATTACTCCTATTGAGGAAGAAGATCAACCAGATCCCTCGCCTGATTCTATTGCTTGTCCCAGTGCTACTACTAAGCCATACCCGTTGGTGGCCCAAGGTGGGACATTGGCTGCTGGAGTAGCAGGTTGTGGTCAAGCAGATGCATTAAAAGCTGCTCTTACTGCTGTGGCGAAGAGCAATGAGCAGATTGACCACAACCTGCTTGTAAAAATTCTAAGTAATCCGACAATTTTAGAACAGTTAGTTAGGCATCAAGGTCCTCAGAGTATCCCCAAGCCTTTATCTTCTGGAGCACCTGTGTACAGGATGCATACACCAGCTCCTCCTCCTCCTCAGTATAATAATATGGAAACAGGATCATCCTCATCCCCAATGATGATGTCAAATGGGTTAGTGTACCCGTATACTAATGGTACTGGACCTATGACCCATCAGCAATCAATCCCACCGCTCTCTATACAGTCTGGTTCTGGTTCTCAAATGAAGGACCTCAACTACTACAAGAACTTGATTCACCAACATGGAGGAGAAAGGCAAGGCGAGCCTCAACCTCAACCTCAAGCTCAACCTCCATTTTCAACCCATCCCATTCCCATCCATCATTCAGGAATAATAGATCAAGAAGTAGATAATTCAAAACCAAGGGATGCAAAACATAAGATTATGAAGCCTTGTATTTATTTCAATAGTTCAAAAGGTTGCAGACATGGTGCGAATTCTATTTATCAGCATGACATGTCGCTCCAGCAACGGGTTAGTAGCATCTCAGAAATGCAGAGTGCAAAGAGAATGAAGATGGATAGAGAGATTAGAGGACCACAGTCATACATTTAA ATGCACCAAGCAGACCACAGAAGGCAGAAGGAAGCACAGCAGCAACACTATAAAACCTGCAAACAGCTCAGCAACCAACCACAACAGAAACAACTGACTGCAACAACAGAACAAAACAGCAGCAAACACTCATCCATGTGCATATTTGCACTGTCCAATATAGTGTGTGCTGGGCAGGATGACCAAACATTGCCTTCAATCCCCATTACTCCTATTGAGGAAGAAGATCAACCAGATCCCTCGCCTGATTCTATTGCTTGTCCCAGTGCTACTACTAAGCCATACCCGTTGGTGGCCCAAGGTGGGACATTGGCTGCTGGAGTAGCAGGTTGTGGTCAAGCAGATGCATTAAAAGCTGCTCTTACTGCTGTGGCGAAGAGCAATGAGCAGATTGACCACAACCTGCTTGTAAAAATTCTAAGTAATCCGACAATTTTAGAACAGTTAGTTAGGCATCAAGGTCCTCAGAGTATCCCCAAGCCTTTATCTTCTGGAGCACCTGTGTACAGGATGCATACACCAGCTCCTCCTCCTCCTCAGTATAATAATATGGAAACAGGATCATCCTCATCCCCAATGATGATGTCAAATGGGTTAGTGTACCCGTATACTAATGGTACTGGACCTATGACCCATCAGCAATCAATCCCACCGCTCTCTATACAGTCTGGTTCTGGTTCTCAAATGAAGGACCTCAACTACTACAAGAACTTGATTCACCAACATGGAGGAGAAAGGCAAGGCGAGCCTCAACCTCAACCTCAAGCTCAACCTCCATTTTCAACCCATCCCATTCCCATCCATCATTCAGGAATAATAGATCAAGAAGTAGATAATTCAAAACCAAGGGATGCAAAACATAAGATTATGAAGCCTTGTATTTATTTCAATAGTTCAAAAGGTTGCAGACATGGTGCGAATTCTATTTATCAGCATGACATGTCGCTCCAGCAACGGGTTAGTAGCATCTCAGAAATGCAGAGTGCAAAGAGAATGAAGATGGATAGAGAGATTAGAGGACCACAGTCATACATTTAA MHQADHRRQKEAQQQHYKTCKQLSNQPQQKQLTATTEQNSSKHSSMCIFALSNIVCAGQDDQTLPSIPITPIEEEDQPDPSPDSIACPSATTKPYPLVAQGGTLAAGVAGCGQADALKAALTAVAKSNEQIDHNLLVKILSNPTILEQLVRHQGPQSIPKPLSSGAPVYRMHTPAPPPPQYNNMETGSSSSPMMMSNGLVYPYTNGTGPMTHQQSIPPLSIQSGSGSQMKDLNYYKNLIHQHGGERQGEPQPQPQAQPPFSTHPIPIHHSGIIDQEVDNSKPRDAKHKIMKPCIYFNSSKGCRHGANSIYQHDMSLQQRVSSISEMQSAKRMKMDREIRGPQSYI Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23186.1 vs. NCBI nr
Match: gi|902188875|gb|KNA11251.1| (hypothetical protein SOVF_136950 [Spinacia oleracea]) HSP 1 Score: 657.9 bits (1696), Expect = 9.700e-186 Identity = 332/339 (97.94%), Postives = 337/339 (99.41%), Query Frame = 1
BLAST of Spo23186.1 vs. NCBI nr
Match: gi|902183084|gb|KNA10043.1| (hypothetical protein SOVF_147350 [Spinacia oleracea]) HSP 1 Score: 555.8 bits (1431), Expect = 5.200e-155 Identity = 284/300 (94.67%), Postives = 289/300 (96.33%), Query Frame = 1
BLAST of Spo23186.1 vs. NCBI nr
Match: gi|731362084|ref|XP_010692708.1| (PREDICTED: zinc finger CCCH domain-containing protein 6 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 341.7 bits (875), Expect = 1.500e-90 Identity = 207/343 (60.35%), Postives = 236/343 (68.80%), Query Frame = 1
BLAST of Spo23186.1 vs. NCBI nr
Match: gi|225458045|ref|XP_002277913.1| (PREDICTED: zinc finger CCCH domain-containing protein 6 [Vitis vinifera]) HSP 1 Score: 181.0 bits (458), Expect = 3.500e-42 Identity = 140/320 (43.75%), Postives = 183/320 (57.19%), Query Frame = 1
BLAST of Spo23186.1 vs. NCBI nr
Match: gi|1000986876|ref|XP_015576185.1| (PREDICTED: zinc finger CCCH domain-containing protein 6 [Ricinus communis]) HSP 1 Score: 181.0 bits (458), Expect = 3.500e-42 Identity = 139/321 (43.30%), Postives = 174/321 (54.21%), Query Frame = 1
BLAST of Spo23186.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QXL0_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_136950 PE=4 SV=1) HSP 1 Score: 657.9 bits (1696), Expect = 6.800e-186 Identity = 332/339 (97.94%), Postives = 337/339 (99.41%), Query Frame = 1
BLAST of Spo23186.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QTL1_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_147350 PE=4 SV=1) HSP 1 Score: 555.8 bits (1431), Expect = 3.600e-155 Identity = 284/300 (94.67%), Postives = 289/300 (96.33%), Query Frame = 1
BLAST of Spo23186.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BFA8_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g022010 PE=4 SV=1) HSP 1 Score: 341.7 bits (875), Expect = 1.100e-90 Identity = 207/343 (60.35%), Postives = 236/343 (68.80%), Query Frame = 1
BLAST of Spo23186.1 vs. UniProtKB/TrEMBL
Match: B9R861_RICCO (Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_1596980 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.400e-42 Identity = 139/321 (43.30%), Postives = 174/321 (54.21%), Query Frame = 1
BLAST of Spo23186.1 vs. UniProtKB/TrEMBL
Match: F6H069_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g13880 PE=4 SV=1) HSP 1 Score: 181.0 bits (458), Expect = 2.400e-42 Identity = 140/320 (43.75%), Postives = 183/320 (57.19%), Query Frame = 1
BLAST of Spo23186.1 vs. ExPASy Swiss-Prot
Match: C3H6_ARATH (Zinc finger CCCH domain-containing protein 6 OS=Arabidopsis thaliana GN=At1g19860 PE=2 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 1.400e-27 Identity = 103/296 (34.80%), Postives = 152/296 (51.35%), Query Frame = 1
BLAST of Spo23186.1 vs. ExPASy Swiss-Prot
Match: C3H30_ORYSJ (Zinc finger CCCH domain-containing protein 30 OS=Oryza sativa subsp. japonica GN=Os04g0663200 PE=2 SV=3) HSP 1 Score: 88.6 bits (218), Expect = 1.500e-16 Identity = 106/337 (31.45%), Postives = 149/337 (44.21%), Query Frame = 1
BLAST of Spo23186.1 vs. ExPASy Swiss-Prot
Match: C3H68_ARATH (Zinc finger CCCH domain-containing protein 68 OS=Arabidopsis thaliana GN=At5g66270 PE=2 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.100e-6 Identity = 48/166 (28.92%), Postives = 72/166 (43.37%), Query Frame = 1
BLAST of Spo23186.1 vs. TAIR (Arabidopsis)
Match: AT1G19860.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein) HSP 1 Score: 125.2 bits (313), Expect = 8.000e-29 Identity = 103/296 (34.80%), Postives = 152/296 (51.35%), Query Frame = 1
BLAST of Spo23186.1 vs. TAIR (Arabidopsis)
Match: AT5G66270.1 (Zinc finger C-x8-C-x5-C-x3-H type family protein) HSP 1 Score: 54.3 bits (129), Expect = 1.700e-7 Identity = 48/166 (28.92%), Postives = 72/166 (43.37%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23186.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23186.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23186.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 3
BLAST of Spo23186.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
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