Spo23377 (gene)

Overview
NameSpo23377
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPre-mRNA-splicing factor SLU7-A
Locationchr6 : 44163290 .. 44163767 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGGTGAGTTTCCGATACTTTTATAATCAAGTTTCTTTATGTTCTTTGATTTTGGTGGTGTTGATAGAACATTAAGAACTGACCATCCAAATTTTTGGTGGATCTTCAGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

mRNA sequence

ATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Coding sequence (CDS)

ATGGGGAAATTTGCAGTGGCGTTTAAGTCTAGGGAAGACCATAGGAAGCAGTTTGAATTAGAGGAAGCTCGTAAAGCTGGGCTTGCGCCAGCTGAGGTTGATGAAGATGGAAAAGAGATTAATCCTCACATTCCGCAGTATATGTCTTCTGCTCCTTGGTATCTCAATTCGAATAAGCCGAGTTTGAAGCATCAAAGGAAGTGGAAATCGGATCCGAATTACACCAAATCGTGGTATAACAGAGGTGAAAAAGGTTTTCAGGCATCAAAGAGATTGATGTTCCAGACTATGCACAACCGAGTTCTAAGTGTCTTTTATTGGTGGAAAGAAAATAGACCGGTGGTGCTCTATGTGTCTTTCAATCCCTCCTAA

Protein sequence

MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKHQRKWKSDPNYTKSWYNRGEKGFQASKRLMFQTMHNRVLSVFYWWKENRPVVLYVSFNPS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23377.1Spo23377.1mRNA


Homology
[Close]
BLAST of Spo23377.1 vs. NCBI nr
Match: gi|731336505|ref|XP_010679298.1| (PREDICTED: pre-mRNA-splicing factor SLU7-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 177.2 bits (448), Expect = 1.800e-41
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90
[Close]
BLAST of Spo23377.1 vs. NCBI nr
Match: gi|6686410|gb|AAF23844.1|AC007234_16 (F1E22.4 [Arabidopsis thaliana])

HSP 1 Score: 169.5 bits (428), Expect = 3.700e-39
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1 

		  

Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 6  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 65

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 66 HQRKWKSDPNYTKSWYDRGAKIFQAEK 92
[Close]
BLAST of Spo23377.1 vs. NCBI nr
Match: gi|902228730|gb|KNA21247.1| (hypothetical protein SOVF_045230 [Spinacia oleracea])

HSP 1 Score: 169.5 bits (428), Expect = 3.700e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87
[Close]
BLAST of Spo23377.1 vs. NCBI nr
Match: gi|2190551|gb|AAB60915.1| (Similar to C. elegans hypothetical protein K07C5.6 (gb|Z71181). ESTs gb|H36844,gb|AA394956 come from this gene [Arabidopsis thaliana])

HSP 1 Score: 169.5 bits (428), Expect = 3.700e-39
Identity = 81/87 (93.10%), Postives = 82/87 (94.25%), Query Frame = 1 

		  

Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 6  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 65

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 66 HQRKWKSDPNYTKSWYDRGAKIFQAEK 92
[Close]
BLAST of Spo23377.1 vs. NCBI nr
Match: gi|674914945|emb|CDY18194.1| (BnaC05g02170D [Brassica napus])

HSP 1 Score: 168.3 bits (425), Expect = 8.300e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1 

		  

Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 4  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 63

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K +QA K
Sbjct: 64 HQRKWKSDPNYTKSWYDRGAKIYQAEK 90
[Close]
BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCG5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g121130 PE=4 SV=1)

HSP 1 Score: 177.2 bits (448), Expect = 1.200e-41
Identity = 84/90 (93.33%), Postives = 85/90 (94.44%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWYNRGEKGFQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQAEK 90
[Close]
BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RQY9_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_045230 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.600e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP
Sbjct: 1  MATASVAFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQ 88
          SLKHQRKWKSDPNYTKSWYNRGEKG +
Sbjct: 61 SLKHQRKWKSDPNYTKSWYNRGEKGIK 87
[Close]
BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A078FYG9_BRANA (BnaC05g02170D protein OS=Brassica napus GN=BnaC05g02170D PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.800e-39
Identity = 80/87 (91.95%), Postives = 82/87 (94.25%), Query Frame = 1 

		  

Query: 4  FAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLK 63
          FAVAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KPSLK
Sbjct: 4  FAVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKPSLK 63

Query: 64 HQRKWKSDPNYTKSWYNRGEKGFQASK 91
          HQRKWKSDPNYTKSWY+RG K +QA K
Sbjct: 64 HQRKWKSDPNYTKSWYDRGAKIYQAEK 90
[Close]
BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QU18_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_141540 PE=4 SV=1)

HSP 1 Score: 168.3 bits (425), Expect = 5.800e-39
Identity = 79/80 (98.75%), Postives = 80/80 (100.00%), Query Frame = 1 

		  

Query: 5  AVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKH 64
          +VAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKH
Sbjct: 5  SVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKH 64

Query: 65 QRKWKSDPNYTKSWYNRGEK 85
          QRKWKSDPNYTKSWYNRGEK
Sbjct: 65 QRKWKSDPNYTKSWYNRGEK 84
[Close]
BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Match: D7KSF4_ARALL (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_475672 PE=4 SV=1)

HSP 1 Score: 166.8 bits (421), Expect = 1.700e-38
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90
[Close]
BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7A_ARATH (Pre-mRNA-splicing factor SLU7-A OS=Arabidopsis thaliana GN=At1g65660 PE=1 SV=2)

HSP 1 Score: 166.8 bits (421), Expect = 1.500e-40
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90
[Close]
BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSJ (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.700e-39
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +V+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90
[Close]
BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7_ORYSI (Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2)

HSP 1 Score: 163.3 bits (412), Expect = 1.700e-39
Identity = 77/90 (85.56%), Postives = 83/90 (92.22%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +V+FKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLN++KP
Sbjct: 1  MATASVSFKSREDHRKQLELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNADKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQR WKSDPNYTKSWY+RG K FQA+K
Sbjct: 61 SLKHQRNWKSDPNYTKSWYDRGAKLFQANK 90
[Close]
BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7B_ARATH (Pre-mRNA-splicing factor SLU7-B OS=Arabidopsis thaliana GN=At4g37120 PE=2 SV=3)

HSP 1 Score: 139.0 bits (349), Expect = 3.400e-32
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90
[Close]
BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Match: SLU7_DICDI (Pre-mRNA-splicing factor slu7 OS=Dictyostelium discoideum GN=slu7 PE=2 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 3.900e-20
Identity = 48/83 (57.83%), Postives = 64/83 (77.11%), Query Frame = 1 

		  

Query: 9  KSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKPSLKHQRKW 68
          K+R++++K+ EL+EARKAG APAE+DE+GKEINPHIP+Y+  APWYLN+NKPSLKHQR  
Sbjct: 9  KTRDEYKKEKELDEARKAGNAPAELDEEGKEINPHIPEYILKAPWYLNANKPSLKHQR-G 68

Query: 69 KSDPNYTKSWYNRGEKGFQASKR 92
           +     K WY RG    +A+ +
Sbjct: 69 VTKKEMDKGWYLRGATTGEAATK 90
[Close]
BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Match: AT1G65660.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 166.8 bits (421), Expect = 8.500e-42
Identity = 80/90 (88.89%), Postives = 82/90 (91.11%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRKQ ELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNS KP
Sbjct: 1  MATASVAFKSREDHRKQIELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQRKWKSDPNYTKSWY+RG K FQA K
Sbjct: 61 SLKHQRKWKSDPNYTKSWYDRGAKIFQAEK 90
[Close]
BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Match: AT4G37120.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 139.0 bits (349), Expect = 1.900e-33
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSREDHRK+ ELEEARKAGLAPAEVDEDGKEINPHIP+YMS APWYL S +P
Sbjct: 1  MATASVAFKSREDHRKKLELEEARKAGLAPAEVDEDGKEINPHIPEYMSKAPWYLKSEQP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK +P   K WY+RG+K +QA +
Sbjct: 61 SLKHQKNWKIEPEPKKIWYDRGKKIYQAEQ 90
[Close]
BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Match: AT3G45950.1 (Pre-mRNA splicing Prp18-interacting factor)

HSP 1 Score: 120.2 bits (300), Expect = 9.100e-28
Identity = 60/90 (66.67%), Postives = 70/90 (77.78%), Query Frame = 1 

		  

Query: 1  MGKFAVAFKSREDHRKQFELEEARKAGLAPAEVDEDGKEINPHIPQYMSSAPWYLNSNKP 60
          M   +VAFKSR+DHRKQ ELEEARKAGLAPAEVDE GKEIN HIP+Y++  P Y  S KP
Sbjct: 1  MATASVAFKSRKDHRKQKELEEARKAGLAPAEVDEGGKEINLHIPKYLTIPPLYAKSEKP 60

Query: 61 SLKHQRKWKSDPNYTKSWYNRGEKGFQASK 91
          SLKHQ+ WK+ P  T S+Y+RG K +QA K
Sbjct: 61 SLKHQKNWKTKPVSTTSYYDRGAKTYQAEK 90
The following BLAST results are available for this feature:
BLAST of Spo23377.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731336505|ref|XP_010679298.1|1.8e-4193.3PREDICTED: pre-mRNA-splicing f... [more]
gi|6686410|gb|AAF23844.1|AC007234_163.7e-3993.1F1E22.4 [Arabidopsis thaliana][more]
gi|902228730|gb|KNA21247.1|3.7e-3991.9hypothetical protein SOVF_0452... [more]
gi|2190551|gb|AAB60915.1|3.7e-3993.1Similar to C. elegans hypothet... [more]
gi|674914945|emb|CDY18194.1|8.3e-3991.9BnaC05g02170D [Brassica napus][more]
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BLAST of Spo23377.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8CCG5_BETVU1.2e-4193.3Uncharacterized protein OS=Bet... [more]
A0A0K9RQY9_SPIOL2.6e-3991.9Uncharacterized protein OS=Spi... [more]
A0A078FYG9_BRANA5.8e-3991.9BnaC05g02170D protein OS=Brass... [more]
A0A0K9QU18_SPIOL5.8e-3998.7Uncharacterized protein (Fragm... [more]
D7KSF4_ARALL1.7e-3888.8Pre-mRNA-splicing factor SLU7-... [more]
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BLAST of Spo23377.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SLU7A_ARATH1.5e-4088.8Pre-mRNA-splicing factor SLU7-... [more]
SLU7_ORYSJ1.7e-3985.5Pre-mRNA-splicing factor SLU7 ... [more]
SLU7_ORYSI1.7e-3985.5Pre-mRNA-splicing factor SLU7 ... [more]
SLU7B_ARATH3.4e-3272.2Pre-mRNA-splicing factor SLU7-... [more]
SLU7_DICDI3.9e-2057.8Pre-mRNA-splicing factor slu7 ... [more]
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BLAST of Spo23377.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3
Match NameE-valueIdentityDescription
AT1G65660.18.5e-4288.8Pre-mRNA splicing Prp18-intera... [more]
AT4G37120.11.9e-3372.2Pre-mRNA splicing Prp18-intera... [more]
AT3G45950.19.1e-2866.6Pre-mRNA splicing Prp18-intera... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR12942STEP II SPLICING FACTOR SLU7coord: 6..90
score: 1.1
NoneNo IPR availablePANTHERPTHR12942:SF2PRE-MRNA-SPLICING FACTOR SLU7coord: 6..90
score: 1.1

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051276 chromosome organization
biological_process GO:0009628 response to abiotic stimulus
biological_process GO:0009750 response to fructose
biological_process GO:0009723 response to ethylene
biological_process GO:0009737 response to abscisic acid
biological_process GO:2000067 regulation of root morphogenesis
biological_process GO:0008152 metabolic process
biological_process GO:0009630 gravitropism
biological_process GO:0007186 G-protein coupled receptor signaling pathway
biological_process GO:0006887 exocytosis
biological_process GO:0010051 xylem and phloem pattern formation
biological_process GO:0048364 root development
biological_process GO:0040029 regulation of gene expression, epigenetic
biological_process GO:0010555 response to mannitol
biological_process GO:0050794 regulation of cellular process
biological_process GO:0044238 primary metabolic process
biological_process GO:0009933 meristem structural organization
biological_process GO:0048366 leaf development
biological_process GO:0016458 gene silencing
biological_process GO:0009908 flower development
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:1901700 response to oxygen-containing compound
biological_process GO:0010033 response to organic substance
biological_process GO:0009719 response to endogenous stimulus
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0009749 response to glucose
biological_process GO:0009744 response to sucrose
biological_process GO:0009408 response to heat
biological_process GO:0010150 leaf senescence
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0048765 root hair cell differentiation
biological_process GO:0009651 response to salt stress
biological_process GO:0002237 response to molecule of bacterial origin
biological_process GO:0010119 regulation of stomatal movement
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0009789 positive regulation of abscisic acid-activated signaling pathway
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0010351 lithium ion transport
biological_process GO:0006869 lipid transport
biological_process GO:0009871 jasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
biological_process GO:0009652 thigmotropism
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0001736 establishment of planar polarity
biological_process GO:0050832 defense response to fungus
biological_process GO:0042742 defense response to bacterium
biological_process GO:0052544 defense response by callose deposition in cell wall
biological_process GO:0009736 cytokinin-activated signaling pathway
biological_process GO:0048825 cotyledon development
biological_process GO:0009926 auxin polar transport
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006397 mRNA processing
biological_process GO:0015031 protein transport
biological_process GO:0009987 cellular process
biological_process GO:0009793 embryo development ending in seed dormancy
biological_process GO:0006457 protein folding
biological_process GO:0009410 response to xenobiotic stimulus
biological_process GO:0007165 signal transduction
biological_process GO:0009069 serine family amino acid metabolic process
biological_process GO:0006468 protein phosphorylation
biological_process GO:0051301 cell division
biological_process GO:0030261 chromosome condensation
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
biological_process GO:0051321 meiotic cell cycle
biological_process GO:0007064 mitotic sister chromatid cohesion
biological_process GO:0050790 regulation of catalytic activity
biological_process GO:0006897 endocytosis
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0046854 phosphatidylinositol phosphorylation
biological_process GO:0008284 positive regulation of cell proliferation
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0043687 post-translational protein modification
biological_process GO:0048015 phosphatidylinositol-mediated signaling
biological_process GO:0035196 production of miRNAs involved in gene silencing by miRNA
biological_process GO:0006661 phosphatidylinositol biosynthetic process
biological_process GO:0030422 production of siRNA involved in RNA interference
biological_process GO:0006886 intracellular protein transport
cellular_component GO:0005773 vacuole
cellular_component GO:0000785 chromatin
cellular_component GO:0008278 cohesin complex
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0005634 nucleus
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005856 cytoskeleton
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0030132 clathrin coat of coated pit
cellular_component GO:0005886 plasma membrane
cellular_component GO:0009524 phragmoplast
cellular_component GO:0000145 exocyst
cellular_component GO:0005622 intracellular
cellular_component GO:0030130 clathrin coat of trans-Golgi network vesicle
cellular_component GO:0009507 chloroplast
cellular_component GO:0031461 cullin-RING ubiquitin ligase complex
cellular_component GO:0005829 cytosol
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005774 vacuolar membrane
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003727 single-stranded RNA binding
molecular_function GO:0000386 second spliceosomal transesterification activity
molecular_function GO:0003682 chromatin binding
molecular_function GO:0005524 ATP binding
molecular_function GO:0005515 protein binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0036459 thiol-dependent ubiquitinyl hydrolase activity
molecular_function GO:0031072 heat shock protein binding
molecular_function GO:0051082 unfolded protein binding
molecular_function GO:0005488 binding
molecular_function GO:0004430 1-phosphatidylinositol 4-kinase activity
molecular_function GO:0016746 transferase activity, transferring acyl groups
molecular_function GO:0031625 ubiquitin protein ligase binding
molecular_function GO:0030695 GTPase regulator activity
molecular_function GO:0005198 structural molecule activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0046982 protein heterodimerization activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0003677 DNA binding
molecular_function GO:0031683 G-protein beta/gamma-subunit complex binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0046872 metal ion binding
molecular_function GO:0004871 obsolete signal transducer activity
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0017111 nucleoside-triphosphatase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0005215 transporter activity
RNA-Seq Expression