Spo23441 (gene) | SpinachBase

Overview


Name	Spo23441
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	RmlC-like cupins superfamily protein
Location	chr3 : 24654610 .. 24654930 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

mRNA sequence

ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

Coding sequence (CDS)

ATGAGGATAGAGAAGCCTTTGGAAGAGCTATACAAGATAAGGGTAGAAAGAAAAGTATCTCCAGAACGTTTAAATGAGCTTGGAGTATCAAGATGGACAACATGGAAGACTGGAAAATGCAGATTGCCTTGGGACTGGCATGTGGATCAGCTGGTTTACATTGAAGAGGGAGAGGTTAGAGTTGTCCCTGAAGGTAGCAAACATTATATGAGTTTCAAAGCTGGTGATCTTGTGCGTTACCCTAAATGGTTCGAGGCTGACCTCTGGTTCAACGCTTTTTACCAAGAACGTTATAGCTTTCGAGCTTATGGTGATGATTAG

Protein sequence

MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23441.1	Spo23441.1	mRNA

Homology

[Close]

BLAST of Spo23441.1 vs. NCBI nr
Match: gi|902182919|gb|KNA10012.1| (hypothetical protein SOVF_148320 [Spinacia oleracea])

HSP 1 Score: 231.5 bits (589), Expect = 6.900e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 143

[Close]

BLAST of Spo23441.1 vs. NCBI nr
Match: gi|731366911|ref|XP_010695324.1| (PREDICTED: uncharacterized protein LOC104907987 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 215.7 bits (548), Expect = 3.900e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 67  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 126

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 127 VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 172

[Close]

BLAST of Spo23441.1 vs. NCBI nr
Match: gi|870844892|gb|KMS97754.1| (hypothetical protein BVRB_5g124250 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 215.7 bits (548), Expect = 3.900e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 143

[Close]

BLAST of Spo23441.1 vs. NCBI nr
Match: gi|661885047|emb|CDP11330.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 200.7 bits (509), Expect = 1.300e-48
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVER VS ERL ELGVS+W+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERNVSKERLAELGVSKWSVWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ +M F AGDLVRYPKWFEADLWFN FYQERY FRAYGDD
Sbjct: 98  VVPEGSERFMRFVAGDLVRYPKWFEADLWFNDFYQERYKFRAYGDD 143

[Close]

BLAST of Spo23441.1 vs. NCBI nr
Match: gi|657975610|ref|XP_008379657.1| (PREDICTED: uncharacterized protein LOC103442632 [Malus domestica])

HSP 1 Score: 198.4 bits (503), Expect = 6.500e-48
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MR+EKPLEELY++RVERKVS ERL ELGVSRW+ WKTGKC+LPWDW VDQLVYIEEGEVR
Sbjct: 40  MRVEKPLEELYQVRVERKVSQERLAELGVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVR 99

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ YM F AGDLVRYPKW EADLWFN  YQERYSFRAYGDD
Sbjct: 100 VVPEGSQQYMQFVAGDLVRYPKWLEADLWFNGPYQERYSFRAYGDD 145

[Close]

BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QRT7_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_148320 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 4.800e-58
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 143

[Close]

BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B8X6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g124250 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 2.700e-53
Identity = 98/106 (92.45%), Postives = 101/106 (95.28%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY IRVERKVS ERL ELGVSRW+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNIRVERKVSSERLKELGVSRWSMWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSKHYMSFKAGDLVRYPKWFEADLWFN FYQERY+FRAYGDD
Sbjct: 98  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNDFYQERYNFRAYGDD 143

[Close]

BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A068US20_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00033517001 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 9.100e-49
Identity = 90/106 (84.91%), Postives = 96/106 (90.57%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVER VS ERL ELGVS+W+ WKTGKC+LPWDWHVDQLVYIEEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERNVSKERLAELGVSKWSVWKTGKCKLPWDWHVDQLVYIEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ +M F AGDLVRYPKWFEADLWFN FYQERY FRAYGDD
Sbjct: 98  VVPEGSERFMRFVAGDLVRYPKWFEADLWFNDFYQERYKFRAYGDD 143

[Close]

BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: M5WSX4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013006mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 1.000e-47
Identity = 91/106 (85.85%), Postives = 96/106 (90.57%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY++RVERKVSPERL ELGVSRW+ WKTGKC+LPWDW VDQLVYIEEGEVR
Sbjct: 40  MRIEKPLEELYQVRVERKVSPERLAELGVSRWSMWKTGKCKLPWDWQVDQLVYIEEGEVR 99

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FN  YQERY FRAYGDD
Sbjct: 100 VVPEGSKQYMRFVAGDLVRYPKWLEADLFFNGPYQERYRFRAYGDD 145

[Close]

BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Match: A0A059A0X3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00770 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 1.700e-47
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           MRIEKPLEELY +RVERKVS ERL ELGVSRW+ WKTGKCRLPWDW VDQLVY+EEGEVR
Sbjct: 38  MRIEKPLEELYNVRVERKVSKERLEELGVSRWSVWKTGKCRLPWDWQVDQLVYVEEGEVR 97

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGS+ YM F AGDLV YPKWFEADL+FN  YQERYSFRAYGDD
Sbjct: 98  VVPEGSERYMQFLAGDLVLYPKWFEADLYFNGPYQERYSFRAYGDD 143

[Close]

BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT2G32650.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-47
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           M+ EKPLEELY ++VERKVS +RL ELGVSRW+ WKTGKC+LPWDW VDQLVYIE+GEVR
Sbjct: 34  MQTEKPLEELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVR 93

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FNA Y ERY F+AYGDD
Sbjct: 94  VVPEGSKRYMQFLAGDLVRYPKWLEADLFFNAPYIERYCFKAYGDD 139

[Close]

BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT2G32180.1 (plastid transcriptionally active 18)

HSP 1 Score: 185.3 bits (469), Expect = 2.000e-47
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1

		  
Query: 1   MRIEKPLEELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVR 60
           M+ EKPLEELY ++VERKVS +RL ELGVSRW+ WKTGKC+LPWDW VDQLVYIE+GEVR
Sbjct: 34  MQTEKPLEELYNVKVERKVSQKRLEELGVSRWSVWKTGKCKLPWDWQVDQLVYIEQGEVR 93

Query: 61  VVPEGSKHYMSFKAGDLVRYPKWFEADLWFNAFYQERYSFRAYGDD 107
           VVPEGSK YM F AGDLVRYPKW EADL+FNA Y ERY F+AYGDD
Sbjct: 94  VVPEGSKRYMQFLAGDLVRYPKWLEADLFFNAPYIERYCFKAYGDD 139

[Close]

BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT4G10300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 57.0 bits (136), Expect = 8.200e-9
Identity = 25/88 (28.41%), Postives = 41/88 (46.59%), Query Frame = 1

		  
Query: 13  IRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSF 72
           I +E+     +L +LGV  W  W     + PW +   +  Y+ +G+V+V P GS   +  
Sbjct: 46  ITIEKNPPESKLTQLGVRSWPKWGCPPSKFPWTYSAKETCYLLQGKVKVYPNGSDEGVEI 105

Query: 73  KAGDLVRYPKWFEADLWFNAFYQERYSF 101
           +AGD V +PK        +    + Y F
Sbjct: 106 EAGDFVVFPKGMSCTWDVSVAVDKHYQF 133

[Close]

BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT3G04300.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.400e-8
Identity = 28/88 (31.82%), Postives = 43/88 (48.86%), Query Frame = 1

		  
Query: 13  IRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEGSKHYMSF 72
           I +E   S  RL++LGV  W  W     +    +   +  Y+ +G+V+V P+GS  ++ F
Sbjct: 3   IVIENNPSSRRLSDLGVMSWPKWSCQPGKYALVFEERETCYLVKGKVKVYPKGSSEFVEF 62

Query: 73  KAGDLVRYPKWFEADLWFNAFYQERYSF 101
            AGDLV  PK        + F  + Y F
Sbjct: 63  GAGDLVTIPKGLSCTWDVSLFIDKHYKF 90

[Close]

BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Match: AT4G10290.1 (RmlC-like cupins superfamily protein)

HSP 1 Score: 53.5 bits (127), Expect = 9.100e-8
Identity = 25/77 (32.47%), Postives = 44/77 (57.14%), Query Frame = 1

		  
Query: 9  ELYKIRVERKVSPERLNELGVSRWTTWKTGKCRLPWDWHVDQLVYIEEGEVRVVPEG--- 68
          E++ ++V R+ S  +L ELGV+ W  W++   + PW +   + +Y  EG+++V  E    
Sbjct: 16 EIHGVKVMRQTSDAKLAELGVTSWQLWESMPRKFPWKFKKTETMYFVEGKLKVKVEDHHK 75

Query: 69 SKHYMSFKAGDLVRYPK 83
              + F AGDLV +P+
Sbjct: 76 EGEALEFVAGDLVVFPQ 92

The following BLAST results are available for this feature:

BLAST of Spo23441.1 vs. NCBI nr
BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
BLAST of Spo23441.1 vs. ExPASy Swiss-Prot
BLAST of Spo23441.1 vs. TAIR (Arabidopsis)

BLAST of Spo23441.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
gi\|902182919\|gb\|KNA10012.1\|	6.9e-58	100.	hypothetical protein SOVF_1483...	[more]
gi\|731366911\|ref\|XP_010695324.1\|	3.9e-53	92.4	PREDICTED: uncharacterized pro...	[more]
gi\|870844892\|gb\|KMS97754.1\|	3.9e-53	92.4	hypothetical protein BVRB_5g12...	[more]
gi\|661885047\|emb\|CDP11330.1\|	1.3e-48	84.9	unnamed protein product [Coffe...	[more]
gi\|657975610\|ref\|XP_008379657.1\|	6.5e-48	84.9	PREDICTED: uncharacterized pro...	[more]

BLAST of Spo23441.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
A0A0K9QRT7_SPIOL	4.8e-58	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8B8X6_BETVU	2.7e-53	92.4	Uncharacterized protein OS=Bet...	[more]
A0A068US20_COFCA	9.1e-49	84.9	Uncharacterized protein OS=Cof...	[more]
M5WSX4_PRUPE	1.0e-47	85.8	Uncharacterized protein OS=Pru...	[more]
A0A059A0X3_EUCGR	1.7e-47	84.9	Uncharacterized protein OS=Euc...	[more]

BLAST of Spo23441.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

BLAST of Spo23441.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5

Position :

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x 1


Match Name	E-value	Identity	Description
AT2G32650.1	2.0e-47	79.2	RmlC-like cupins superfamily p...	[more]
AT2G32180.1	2.0e-47	79.2	plastid transcriptionally acti...	[more]
AT4G10300.1	8.2e-9	28.4	RmlC-like cupins superfamily p...	[more]
AT3G04300.1	1.4e-8	31.8	RmlC-like cupins superfamily p...	[more]
AT4G10290.1	9.1e-8	32.4	RmlC-like cupins superfamily p...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008579	Domain of unknown function DUF861, cupin-3	PFAM	PF05899	Cupin_3	coord: 25..98 score: 9.6
IPR011051	RmlC-like cupin domain	unknown	SSF51182	RmlC-like cupins	coord: 19..86 score: 5.9
IPR014710	RmlC-like jelly roll fold	GENE3D	2.60.120.10		coord: 6..98 score: 7.1
None	No IPR available	PANTHER	PTHR33271	FAMILY NOT NAMED	coord: 1..106 score: 1.1
None	No IPR available	PANTHER	PTHR33271:SF7	PLASTID TRANSCRIPTIONALLY ACTIVE 18	coord: 1..106 score: 1.1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009073	aromatic amino acid family biosynthetic process
biological_process	GO:0010028	xanthophyll cycle
biological_process	GO:0010103	stomatal complex morphogenesis
biological_process	GO:0009793	embryo development ending in seed dormancy
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0042779	tRNA 3'-trailer cleavage
biological_process	GO:0090502	RNA phosphodiester bond hydrolysis, endonucleolytic
biological_process	GO:0051252	regulation of RNA metabolic process
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0006855	drug transmembrane transport
biological_process	GO:0006412	translation
biological_process	GO:0009657	plastid organization
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0044272	sulfur compound biosynthetic process
biological_process	GO:0048481	plant ovule development
biological_process	GO:0000096	sulfur amino acid metabolic process
biological_process	GO:0009416	response to light stimulus
biological_process	GO:0009408	response to heat
biological_process	GO:0019216	regulation of lipid metabolic process
biological_process	GO:0030154	cell differentiation
biological_process	GO:0031408	oxylipin biosynthetic process
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0008652	cellular amino acid biosynthetic process
biological_process	GO:0016117	carotenoid biosynthetic process
biological_process	GO:0009072	aromatic amino acid family metabolic process
biological_process	GO:0032774	RNA biosynthetic process
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0042793	plastid transcription
biological_process	GO:0051607	defense response to virus
biological_process	GO:0035196	production of miRNAs involved in gene silencing by miRNA
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0009451	RNA modification
biological_process	GO:0019252	starch biosynthetic process
biological_process	GO:0015031	protein transport
biological_process	GO:0000413	protein peptidyl-prolyl isomerization
biological_process	GO:0006457	protein folding
biological_process	GO:0016556	mRNA modification
biological_process	GO:0000023	maltose metabolic process
biological_process	GO:0030488	tRNA methylation
biological_process	GO:0008654	phospholipid biosynthetic process
biological_process	GO:0008299	isoprenoid biosynthetic process
biological_process	GO:0007264	small GTPase mediated signal transduction
biological_process	GO:0006886	intracellular protein transport
biological_process	GO:0009773	photosynthetic electron transport in photosystem I
biological_process	GO:0006396	RNA processing
biological_process	GO:0006449	regulation of translational termination
biological_process	GO:0010267	production of ta-siRNAs involved in RNA interference
biological_process	GO:0043488	regulation of mRNA stability
biological_process	GO:0051083	'de novo' cotranslational protein folding
biological_process	GO:0009637	response to blue light
biological_process	GO:0009220	pyrimidine ribonucleotide biosynthetic process
biological_process	GO:0051258	protein polymerization
biological_process	GO:0007017	microtubule-based process
biological_process	GO:0010020	chloroplast fission
biological_process	GO:0051301	cell division
biological_process	GO:0007049	cell cycle
biological_process	GO:0006448	regulation of translational elongation
biological_process	GO:0019243	methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process	GO:0009058	biosynthetic process
biological_process	GO:0010228	vegetative to reproductive phase transition of meristem
biological_process	GO:0015979	photosynthesis
biological_process	GO:0006655	phosphatidylglycerol biosynthetic process
biological_process	GO:0034660	ncRNA metabolic process
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0009628	response to abiotic stimulus
biological_process	GO:0009987	cellular process
biological_process	GO:0006897	endocytosis
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006014	D-ribose metabolic process
biological_process	GO:0006913	nucleocytoplasmic transport
biological_process	GO:0033036	macromolecule localization
biological_process	GO:0006418	tRNA aminoacylation for protein translation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0006766	vitamin metabolic process
biological_process	GO:0006636	unsaturated fatty acid biosynthetic process
biological_process	GO:0019748	secondary metabolic process
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006733	oxidoreduction coenzyme metabolic process
biological_process	GO:0009117	nucleotide metabolic process
biological_process	GO:0009106	lipoate metabolic process
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0009695	jasmonic acid biosynthetic process
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0016226	iron-sulfur cluster assembly
biological_process	GO:0006546	glycine catabolic process
biological_process	GO:0019344	cysteine biosynthetic process
biological_process	GO:0009108	coenzyme biosynthetic process
biological_process	GO:0015995	chlorophyll biosynthetic process
biological_process	GO:0042545	cell wall modification
biological_process	GO:0006950	response to stress
biological_process	GO:0071702	organic substance transport
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0044237	cellular metabolic process
biological_process	GO:0006351	transcription, DNA-templated
biological_process	GO:0006364	rRNA processing
biological_process	GO:0006167	AMP biosynthetic process
biological_process	GO:0006399	tRNA metabolic process
biological_process	GO:0009902	chloroplast relocation
biological_process	GO:0045036	protein targeting to chloroplast
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
cellular_component	GO:0009295	nucleoid
cellular_component	GO:0022627	cytosolic small ribosomal subunit
cellular_component	GO:0032040	small-subunit processome
cellular_component	GO:0018444	translation release factor complex
cellular_component	GO:0005874	microtubule
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0031977	thylakoid lumen
cellular_component	GO:0031410	cytoplasmic vesicle
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0016020	membrane
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005829	cytosol
cellular_component	GO:0009941	chloroplast envelope
cellular_component	GO:0009536	plastid
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009020	tRNA (guanosine-2'-O-)-methyltransferase activity
molecular_function	GO:0004747	ribokinase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003755	peptidyl-prolyl cis-trans isomerase activity
molecular_function	GO:0008173	RNA methyltransferase activity
molecular_function	GO:0004001	adenosine kinase activity
molecular_function	GO:0015238	drug transmembrane transporter activity
molecular_function	GO:0003747	translation release factor activity
molecular_function	GO:0004812	aminoacyl-tRNA ligase activity
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters
molecular_function	GO:0005525	GTP binding
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0046422	violaxanthin de-epoxidase activity
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003746	translation elongation factor activity
molecular_function	GO:0008146	sulfotransferase activity
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016301	kinase activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0015297	antiporter activity
molecular_function	GO:0042802	identical protein binding
molecular_function	GO:0043621	protein self-association
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity
molecular_function	GO:0003924	GTPase activity

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo03027	0.77	Barchart \| Table
Spo01970	0.76	Barchart \| Table
Spo05510	0.75	Barchart \| Table
Spo08533	0.74	Barchart \| Table
Spo22999	0.74	Barchart \| Table
Spo21501	0.74	Barchart \| Table
Spo18111	0.74	Barchart \| Table
Spo02579	0.74	Barchart \| Table
Spo27291	0.74	Barchart \| Table
Spo14310	0.74	Barchart \| Table
Spo14013	0.74	Barchart \| Table
Spo02816	0.73	Barchart \| Table
Spo21531	0.73	Barchart \| Table
Spo03609	0.72	Barchart \| Table
Spo05733	0.72	Barchart \| Table
Spo20889	0.72	Barchart \| Table
Spo15841	0.72	Barchart \| Table
Spo02001	0.72	Barchart \| Table
Spo17081	0.71	Barchart \| Table
Spo21071	0.71	Barchart \| Table
Spo17288	0.71	Barchart \| Table
Spo17319	0.70	Barchart \| Table
Spo02964	0.70	Barchart \| Table
Spo06287	0.70	Barchart \| Table
Spo11221	0.70	Barchart \| Table
Spo26644	0.69	Barchart \| Table
Spo24054	0.69	Barchart \| Table
Spo17803	0.69	Barchart \| Table
Spo05969	0.69	Barchart \| Table
Spo03057	0.69	Barchart \| Table
Spo07604	0.69	Barchart \| Table
Spo08599	0.68	Barchart \| Table
Spo21609	0.68	Barchart \| Table
Spo00921	0.68	Barchart \| Table
Spo03835	0.68	Barchart \| Table
Spo08879	0.68	Barchart \| Table
Spo16904	0.68	Barchart \| Table
Spo18980	0.68	Barchart \| Table
Spo26857	0.68	Barchart \| Table
Spo02221	0.68	Barchart \| Table
Spo17490	0.68	Barchart \| Table
Spo01831	0.68	Barchart \| Table
Spo23440	0.68	Barchart \| Table
Spo02648	0.67	Barchart \| Table
Spo06488	0.67	Barchart \| Table
Spo08998	0.67	Barchart \| Table
Spo00178	0.67	Barchart \| Table
Spo11928	0.67	Barchart \| Table
Spo14857	0.67	Barchart \| Table
Spo00129	0.67	Barchart \| Table
Spo01828	0.67	Barchart \| Table
Spo00501	0.67	Barchart \| Table
Spo22666	0.67	Barchart \| Table
Spo00391	0.67	Barchart \| Table
Spo24153	0.67	Barchart \| Table
Spo26727	0.67	Barchart \| Table
Spo05607	0.67	Barchart \| Table
Spo23898	0.66	Barchart \| Table
Spo22543	0.66	Barchart \| Table
Spo05115	0.66	Barchart \| Table
Spo22715	0.66	Barchart \| Table
Spo13238	0.66	Barchart \| Table
Spo20295	0.66	Barchart \| Table
Spo10233	0.66	Barchart \| Table
Spo01201	0.66	Barchart \| Table
Spo23127	0.66	Barchart \| Table
Spo22326	0.66	Barchart \| Table
Spo10585	0.65	Barchart \| Table
Spo25913	0.65	Barchart \| Table
Spo09784	0.65	Barchart \| Table
Spo04377	0.65	Barchart \| Table
Spo18027	0.65	Barchart \| Table
Spo18478	0.65	Barchart \| Table
Spo16708	0.65	Barchart \| Table
Spo19401	0.65	Barchart \| Table