Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CGTAAACGTATTCTTATAAGACGAACATAACATAACGTACTCTAAATGGTTATGCGGCTTACACCATCATTAGTTCGTTACAATTTGTTTCCCAAATCATCCCCCGCAAATCCGCAATTGATGCTCTTACAGTTACACCAGACAGGGTTGTTAGCACCGGATAATTTCCAGACCACGGTAAACTAATTTTCTAGGGAAAGAGACAATTTGAGAGCGAGCGTTGAACAACCACACGCCCTCTCCTCCTTCACTCCAGAAGCTTGAATATTACTCCTTTTTTCCCTTTTTGCTAATTTCAATCAAACCCTAATCTCCCTCTCTCTCCTTATCTGCCATCTGGTGGTTGGTGAATTTGTGAAATTTGCAGAAATCAAATGTGTCCACTCAGAATCATTTTGATTTTTCTGTCAGCTACTCTCGCCGGATTCTTTGTGCTCAAGAATCTCAATTCTTCCAATGACGTCGATCTCAATCTTCGTCCCGATTCTCCTAAACCTACCGATTCTACTCCGTCTTCCTGCAAGGTATTTTCAATTTCTCTATTTTCTTCTTTTAATCCGATTTTAGGGTTTTAATTAGATTTTATGGTATTATTATTGATTATTAGAACTAATTTGAAAATTTATTTTGTTTGAATTGAAGGCTAAGGTAATGTCGGCAATTGGTTCGGGTTTCTGGACGATTGTGGATATGGCGAGCGGTCGCTATCTCTGGAACTATTTCTCTGCTGCTACAGCTAAGAGCTCGCCTTAATTCTTTTTCGAGGCAGTATAGTATGTATTGTTGTTGTAGTTGTTGTTGTTGGTGGTGATGATGTTTCTGGTAATTTGAAGAAGATGCATTGTTGGTAACTGTAACTAAGGCCAAGGATGATTATGATGATTGTTGGCTAATAACTCAATTGATGTATTGCTGTAATTTTCTACAACTTCGTATGTATATACACTAATACACATGTTTGTTACTGATATAAAATCGTTCAATTTTCTACTTATGCTATGATGTTTGTTTG CGTAAACGTATTCTTATAAGACGAACATAACATAACGTACTCTAAATGGTTATGCGGCTTACACCATCATTAGTTCGTTACAATTTGTTTCCCAAATCATCCCCCGCAAATCCGCAATTGATGCTCTTACAGTTACACCAGACAGGGTTGTTAGCACCGGATAATTTCCAGACCACGGTAAACTAATTTTCTAGGGAAAGAGACAATTTGAGAGCGAGCGTTGAACAACCACACGCCCTCTCCTCCTTCACTCCAGAAGCTTGAATATTACTCCTTTTTTCCCTTTTTGCTAATTTCAATCAAACCCTAATCTCCCTCTCTCTCCTTATCTGCCATCTGGTGGTTGGTGAATTTGTGAAATTTGCAGAAATCAAATGTGTCCACTCAGAATCATTTTGATTTTTCTGTCAGCTACTCTCGCCGGATTCTTTGTGCTCAAGAATCTCAATTCTTCCAATGACGTCGATCTCAATCTTCGTCCCGATTCTCCTAAACCTACCGATTCTACTCCGTCTTCCTGCAAGGCTAAGGTAATGTCGGCAATTGGTTCGGGTTTCTGGACGATTGTGGATATGGCGAGCGGTCGCTATCTCTGGAACTATTTCTCTGCTGCTACAGCTAAGAGCTCGCCTTAATTCTTTTTCGAGGCAGTATAGTATGTATTGTTGTTGTAGTTGTTGTTGTTGGTGGTGATGATGTTTCTGGTAATTTGAAGAAGATGCATTGTTGGTAACTGTAACTAAGGCCAAGGATGATTATGATGATTGTTGGCTAATAACTCAATTGATGTATTGCTGTAATTTTCTACAACTTCGTATGTATATACACTAATACACATGTTTGTTACTGATATAAAATCGTTCAATTTTCTACTTATGCTATGATGTTTGTTTG ATGTGTCCACTCAGAATCATTTTGATTTTTCTGTCAGCTACTCTCGCCGGATTCTTTGTGCTCAAGAATCTCAATTCTTCCAATGACGTCGATCTCAATCTTCGTCCCGATTCTCCTAAACCTACCGATTCTACTCCGTCTTCCTGCAAGGCTAAGGTAATGTCGGCAATTGGTTCGGGTTTCTGGACGATTGTGGATATGGCGAGCGGTCGCTATCTCTGGAACTATTTCTCTGCTGCTACAGCTAAGAGCTCGCCTTAA MCPLRIILIFLSATLAGFFVLKNLNSSNDVDLNLRPDSPKPTDSTPSSCKAKVMSAIGSGFWTIVDMASGRYLWNYFSAATAKSSP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23462.1 vs. NCBI nr
Match: gi|902142632|gb|KNA04788.1| (hypothetical protein SOVF_196480 [Spinacia oleracea]) HSP 1 Score: 172.2 bits (435), Expect = 4.000e-40 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Spo23462.1 vs. NCBI nr
Match: gi|731349386|ref|XP_010685967.1| (PREDICTED: uncharacterized protein LOC104900277 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 125.2 bits (313), Expect = 5.600e-26 Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 1
BLAST of Spo23462.1 vs. NCBI nr
Match: gi|297745780|emb|CBI15836.3| (unnamed protein product [Vitis vinifera]) HSP 1 Score: 94.0 bits (232), Expect = 1.400e-16 Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1
BLAST of Spo23462.1 vs. NCBI nr
Match: gi|225434367|ref|XP_002269081.1| (PREDICTED: uncharacterized protein LOC100267277 [Vitis vinifera]) HSP 1 Score: 94.0 bits (232), Expect = 1.400e-16 Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1
BLAST of Spo23462.1 vs. NCBI nr
Match: gi|922566491|ref|XP_013611529.1| (PREDICTED: uncharacterized protein LOC106318198 [Brassica oleracea var. oleracea]) HSP 1 Score: 91.3 bits (225), Expect = 9.000e-16 Identity = 53/87 (60.92%), Postives = 62/87 (71.26%), Query Frame = 1
BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QDM2_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_196480 PE=4 SV=1) HSP 1 Score: 172.2 bits (435), Expect = 2.800e-40 Identity = 86/86 (100.00%), Postives = 86/86 (100.00%), Query Frame = 1
BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: A0A0J8BZR5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g175700 PE=4 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 3.900e-26 Identity = 68/87 (78.16%), Postives = 70/87 (80.46%), Query Frame = 1
BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: D7SJL0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_06s0004g07850 PE=4 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 9.700e-17 Identity = 53/88 (60.23%), Postives = 63/88 (71.59%), Query Frame = 1
BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: D7MQC5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_495954 PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 6.300e-16 Identity = 50/85 (58.82%), Postives = 61/85 (71.76%), Query Frame = 1
BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Match: V4LRR7_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10015157mg PE=4 SV=1) HSP 1 Score: 91.3 bits (225), Expect = 6.300e-16 Identity = 51/85 (60.00%), Postives = 60/85 (70.59%), Query Frame = 1
BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Match: AT5G58375.1 (Methyltransferase-related protein) HSP 1 Score: 84.7 bits (208), Expect = 3.000e-17 Identity = 48/85 (56.47%), Postives = 58/85 (68.24%), Query Frame = 1
BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Match: AT5G18150.1 (Methyltransferase-related protein) HSP 1 Score: 59.3 bits (142), Expect = 1.300e-9 Identity = 34/84 (40.48%), Postives = 45/84 (53.57%), Query Frame = 1
BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Match: AT5G14602.1 (FUNCTIONS IN: molecular_function unknown) HSP 1 Score: 51.2 bits (121), Expect = 3.600e-7 Identity = 31/76 (40.79%), Postives = 45/76 (59.21%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23462.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23462.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23462.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 0
BLAST of Spo23462.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 3
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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