Spo23468 (gene) | SpinachBase

Overview


Name	Spo23468
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Transducin/WD40 repeat-like superfamily protein
Location	SpoScf_34888 : 118 .. 570 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTATGAAGTTGATTTCTCTCCTAATGGCTATCATTTGGCCACTGGTTCTGAGGATAACACTTGTCGGATTTGGGACTTGAGAAAGAAAAAGTCATTGTACATAATTCCTGCCCATTCAAAGCTTATTTCACAGGTCAAATTTGAGCCTCAGGAGGGATATTATTTGGTCACTGCTTCATATGATACAACTGTTAAGGTATGAGACTTGGCACTCAATTACTCTCAGTAGTCTGTTTTGTTAAGTTACAAGGAGTGTTTTGTCTCATTTTGTCCTATTTCATCAGGTATGGTCATCTCGAGACTTCAAGCTTATCAGGACATTGTCAGGACATGAAGCAAGAGTTACACCCTTAGATGTCACAGGAGGTAAGATCTTTTCTCTTGGTAAACTGTAGTAAAAGTGATGCGTGCAAAATGGGAACTTATAGTAGCATCTCATTACAAGTTTATA

mRNA sequence

GTTTATGAAGTTGATTTCTCTCCTAATGGCTATCATTTGGCCACTGGTTCTGAGGATAACACTTGTCGGATTTGGGACTTGAGAAAGAAAAAGTCATTGTACATAATTCCTGCCCATTCAAAGCTTATTTCACAGGTCAAATTTGAGCCTCAGGAGGGATATTATTTGGTCACTGCTTCATATGATACAACTGTTAAGGTATGGTCATCTCGAGACTTCAAGCTTATCAGGACATTGTCAGGACATGAAGCAAGAGTTACACCCTTAGATGTCACAGGAGGTAAGATCTTTTCTCTTGGTAAACTGTAGTAAAAGTGATGCGTGCAAAATGGGAACTTATAGTAGCATCTCATTACAAGTTTATA

Coding sequence (CDS)

GTTTATGAAGTTGATTTCTCTCCTAATGGCTATCATTTGGCCACTGGTTCTGAGGATAACACTTGTCGGATTTGGGACTTGAGAAAGAAAAAGTCATTGTACATAATTCCTGCCCATTCAAAGCTTATTTCACAGGTCAAATTTGAGCCTCAGGAGGGATATTATTTGGTCACTGCTTCATATGATACAACTGTTAAGGTATGGTCATCTCGAGACTTCAAGCTTATCAGGACATTGTCAGGACATGAAGCAAGAGTTACACCCTTAGATGTCACAGGAGGTAAGATCTTTTCTCTTGGTAAACTGTAG

Protein sequence

VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTGGKIFSLGKL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23468.1	Spo23468.1	mRNA

Homology

[Close]

BLAST of Spo23468.1 vs. NCBI nr
Match: gi|902165772|gb|KNA07149.1| (hypothetical protein SOVF_174510, partial [Spinacia oleracea])

HSP 1 Score: 196.8 bits (499), Expect = 1.800e-47
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           VY VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS
Sbjct: 35  VYGVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 94

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTGGKI 97
           YDTTVKVWSSRDFKLIRTLSGHEARVT LDVTGG+I
Sbjct: 95  YDTTVKVWSSRDFKLIRTLSGHEARVTSLDVTGGEI 130

[Close]

BLAST of Spo23468.1 vs. NCBI nr
Match: gi|731324370|ref|XP_010672936.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 174.5 bits (441), Expect = 9.600e-41
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ VDFSPNGYHLATGSEDNTCRIWDLRKKKS Y+IPAHSK +S+VKFEPQ+GYYLVTAS
Sbjct: 476 VFGVDFSPNGYHLATGSEDNTCRIWDLRKKKSFYVIPAHSKQLSRVKFEPQDGYYLVTAS 535

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHE+RV  LD+TG
Sbjct: 536 YDTTAKVWSSRDFKPIKTLSGHESRVASLDITG 568

[Close]

BLAST of Spo23468.1 vs. NCBI nr
Match: gi|661882214|emb|CDP14190.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 169.5 bits (428), Expect = 3.100e-39
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLA+G EDNTCRIWDLRK+KSLYIIPAHS LISQVKFEPQEGY+LVT S
Sbjct: 262 VLGVSFSPNGYHLASGGEDNTCRIWDLRKRKSLYIIPAHSNLISQVKFEPQEGYFLVTGS 321

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHEA+VT LDV G
Sbjct: 322 YDTTAKVWSSRDFKPIKTLSGHEAKVTSLDVVG 354

[Close]

BLAST of Spo23468.1 vs. NCBI nr
Match: gi|764620864|ref|XP_004303627.2| (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein, partial [Fragaria vesca subsp. vesca])

HSP 1 Score: 169.1 bits (427), Expect = 4.000e-39
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  + FSPNGYHLATG EDNTCRIWDLRKKKS+YIIPAHS LISQVKFEPQEGY+LVT S
Sbjct: 405 VLALSFSPNGYHLATGGEDNTCRIWDLRKKKSIYIIPAHSNLISQVKFEPQEGYFLVTGS 464

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YD T K+WSSRDFK +RTLSGHEA+VT LDV+G
Sbjct: 465 YDMTAKIWSSRDFKPVRTLSGHEAKVTSLDVSG 497

[Close]

BLAST of Spo23468.1 vs. NCBI nr
Match: gi|697101801|ref|XP_009597855.1| (PREDICTED: U4/U6 small nuclear ribonucleoprotein PRP4-like protein [Nicotiana tomentosiformis])

HSP 1 Score: 169.1 bits (427), Expect = 4.000e-39
Identity = 77/93 (82.80%), Postives = 84/93 (90.32%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLA+G EDNTCRIWDLR++KSLYIIPAHS LISQVKFEPQEGY+LVTAS
Sbjct: 453 VLGVSFSPNGYHLASGGEDNTCRIWDLRQRKSLYIIPAHSNLISQVKFEPQEGYFLVTAS 512

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK ++TLSGHEA+VT LDV G
Sbjct: 513 YDTTAKVWSSRDFKPVKTLSGHEAKVTSLDVAG 545

[Close]

BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QIS7_SPIOL (Uncharacterized protein (Fragment) OS=Spinacia oleracea GN=SOVF_174510 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.300e-47
Identity = 93/96 (96.88%), Postives = 94/96 (97.92%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           VY VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS
Sbjct: 35  VYGVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 94

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTGGKI 97
           YDTTVKVWSSRDFKLIRTLSGHEARVT LDVTGG+I
Sbjct: 95  YDTTVKVWSSRDFKLIRTLSGHEARVTSLDVTGGEI 130

[Close]

BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CT36_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_3g062190 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.700e-41
Identity = 78/93 (83.87%), Postives = 86/93 (92.47%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ VDFSPNGYHLATGSEDNTCRIWDLRKKKS Y+IPAHSK +S+VKFEPQ+GYYLVTAS
Sbjct: 476 VFGVDFSPNGYHLATGSEDNTCRIWDLRKKKSFYVIPAHSKQLSRVKFEPQDGYYLVTAS 535

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHE+RV  LD+TG
Sbjct: 536 YDTTAKVWSSRDFKPIKTLSGHESRVASLDITG 568

[Close]

BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A068V0B6_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00040445001 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 2.200e-39
Identity = 78/93 (83.87%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLA+G EDNTCRIWDLRK+KSLYIIPAHS LISQVKFEPQEGY+LVT S
Sbjct: 262 VLGVSFSPNGYHLASGGEDNTCRIWDLRKRKSLYIIPAHSNLISQVKFEPQEGYFLVTGS 321

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YDTT KVWSSRDFK I+TLSGHEA+VT LDV G
Sbjct: 322 YDTTAKVWSSRDFKPIKTLSGHEAKVTSLDVVG 354

[Close]

BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A022PSD0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a003585mg PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 6.300e-39
Identity = 75/93 (80.65%), Postives = 83/93 (89.25%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  V FSPNGYHLATG EDNTCRIWDLRK+KSLYIIPAHS LISQVKFEPQEGY+LVTAS
Sbjct: 453 VLGVSFSPNGYHLATGGEDNTCRIWDLRKRKSLYIIPAHSNLISQVKFEPQEGYFLVTAS 512

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVTG 94
           YD T K+WSSRDFK ++TLSGHE++VT LD+ G
Sbjct: 513 YDMTAKIWSSRDFKPVKTLSGHESKVTSLDIVG 545

[Close]

BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Match: A0A067K1U2_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22446 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 1.100e-38
Identity = 76/91 (83.52%), Postives = 82/91 (90.11%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  ++FSPNGYHLATG EDNTCRIWDLRKKKSLYIIPAH+ LISQVKFEPQEGYYLVTAS
Sbjct: 274 VLGINFSPNGYHLATGGEDNTCRIWDLRKKKSLYIIPAHANLISQVKFEPQEGYYLVTAS 333

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDV 92
           YD T KVWS RDFK ++TLSGHEA+VT LDV
Sbjct: 334 YDMTAKVWSGRDFKPVKTLSGHEAKVTSLDV 364

[Close]

BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4L_ARATH (U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=LIS PE=2 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 4.200e-36
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ V+FSPNGYHLA+G EDN CRIWDLR +KSLYIIPAH+ L+SQVK+EPQEGY+L TAS
Sbjct: 426 VFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATAS 485

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD  V +WS RDF L+++L+GHE++V  LD+T
Sbjct: 486 YDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517

[Close]

BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_BOVIN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Bos taurus GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.100e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 409 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGA 468

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 469 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 500

[Close]

BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_PONAB (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Pongo abelii GN=PRPF4 PE=2 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 2.100e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 409 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGA 468

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 469 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 500

[Close]

BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_HUMAN (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Homo sapiens GN=PRPF4 PE=1 SV=2)

HSP 1 Score: 122.9 bits (307), Expect = 2.100e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 410 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGNFLLTGA 469

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 470 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 501

[Close]

BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Match: PRP4_MOUSE (U4/U6 small nuclear ribonucleoprotein Prp4 OS=Mus musculus GN=Prpf4 PE=1 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 2.700e-27
Identity = 47/92 (51.09%), Postives = 71/92 (77.17%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           +Y ++FSPNGYH+ATGS DNTC++WDLR+++ +Y IPAH  L++ VKFEP  G +L+T +
Sbjct: 409 IYGINFSPNGYHIATGSGDNTCKVWDLRQRRCVYTIPAHQNLVTGVKFEPIHGDFLLTGA 468

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD T K+W+   +  ++TL+GHE +V  LD++
Sbjct: 469 YDNTAKIWTHPGWSPLKTLAGHEGKVMGLDIS 500

[Close]

BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT2G41500.1 (WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related)

HSP 1 Score: 151.8 bits (382), Expect = 2.400e-37
Identity = 63/92 (68.48%), Postives = 79/92 (85.87%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V+ V+FSPNGYHLA+G EDN CRIWDLR +KSLYIIPAH+ L+SQVK+EPQEGY+L TAS
Sbjct: 426 VFSVNFSPNGYHLASGGEDNQCRIWDLRMRKSLYIIPAHANLVSQVKYEPQEGYFLATAS 485

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDVT 93
           YD  V +WS RDF L+++L+GHE++V  LD+T
Sbjct: 486 YDMKVNIWSGRDFSLVKSLAGHESKVASLDIT 517

[Close]

BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT2G05720.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 140.6 bits (353), Expect = 5.400e-34
Identity = 60/91 (65.93%), Postives = 73/91 (80.22%), Query Frame = 1


		  
Query: 1   VYEVDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTAS 60
           V  VDFSPNGYHLA+G EDN CRIWDLR +K LYIIPAH  L+SQVK+EPQE Y+L TAS
Sbjct: 175 VLSVDFSPNGYHLASGGEDNQCRIWDLRMRKLLYIIPAHVNLVSQVKYEPQERYFLATAS 234

Query: 61  YDTTVKVWSSRDFKLIRTLSGHEARVTPLDV 92
           +D  V +WS RDF L+++L GHE++V  LD+
Sbjct: 235 HDMNVNIWSGRDFSLVKSLVGHESKVASLDI 265

[Close]

BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT1G61210.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 70.5 bits (171), Expect = 6.900e-13
Identity = 34/87 (39.08%), Postives = 48/87 (55.17%), Query Frame = 1


		  
Query: 4   VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDT 63
           V+F P G  LA+GS D   +IWD+RKK  +     HS+ IS ++F P +G ++V+   D 
Sbjct: 106 VEFHPFGEFLASGSSDANLKIWDIRKKGCIQTYKGHSRGISTIRFTP-DGRWVVSGGLDN 165

Query: 64  TVKVWSSRDFKLIRTLSGHEARVTPLD 91
            VKVW     KL+     HE  +  LD
Sbjct: 166 VVKVWDLTAGKLLHEFKFHEGPIRSLD 191

[Close]

BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT1G11160.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 69.7 bits (169), Expect = 1.200e-12
Identity = 33/87 (37.93%), Postives = 47/87 (54.02%), Query Frame = 1


		  
Query: 4   VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDT 63
           V+F P G  LA+GS D   R+WD RKK  +     H++ IS ++F P +G ++V+   D 
Sbjct: 106 VEFHPFGEFLASGSSDTNLRVWDTRKKGCIQTYKGHTRGISTIEFSP-DGRWVVSGGLDN 165

Query: 64  TVKVWSSRDFKLIRTLSGHEARVTPLD 91
            VKVW     KL+     HE  +  LD
Sbjct: 166 VVKVWDLTAGKLLHEFKCHEGPIRSLD 191

[Close]

BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Match: AT5G23430.1 (Transducin/WD40 repeat-like superfamily protein)

HSP 1 Score: 68.6 bits (166), Expect = 2.600e-12
Identity = 31/87 (35.63%), Postives = 49/87 (56.32%), Query Frame = 1


		  
Query: 4   VDFSPNGYHLATGSEDNTCRIWDLRKKKSLYIIPAHSKLISQVKFEPQEGYYLVTASYDT 63
           VDF P G   A+GS D   +IWD+RKK  ++    H++ ++ ++F P +G ++V+   D 
Sbjct: 107 VDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVNVLRFTP-DGRWVVSGGEDN 166

Query: 64  TVKVWSSRDFKLIRTLSGHEARVTPLD 91
            VKVW     KL+     HE ++  LD
Sbjct: 167 IVKVWDLTAGKLLTEFKSHEGQIQSLD 192

The following BLAST results are available for this feature:

BLAST of Spo23468.1 vs. NCBI nr
BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
BLAST of Spo23468.1 vs. TAIR (Arabidopsis)

BLAST of Spo23468.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902165772\|gb\|KNA07149.1\|	1.8e-47	96.8	hypothetical protein SOVF_1745...	[more]
gi\|731324370\|ref\|XP_010672936.1\|	9.6e-41	83.8	PREDICTED: U4/U6 small nuclear...	[more]
gi\|661882214\|emb\|CDP14190.1\|	3.1e-39	83.8	unnamed protein product [Coffe...	[more]
gi\|764620864\|ref\|XP_004303627.2\|	4.0e-39	81.7	PREDICTED: U4/U6 small nuclear...	[more]
gi\|697101801\|ref\|XP_009597855.1\|	4.0e-39	82.8	PREDICTED: U4/U6 small nuclear...	[more]

BLAST of Spo23468.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QIS7_SPIOL	1.3e-47	96.8	Uncharacterized protein (Fragm...	[more]
A0A0J8CT36_BETVU	6.7e-41	83.8	Uncharacterized protein OS=Bet...	[more]
A0A068V0B6_COFCA	2.2e-39	83.8	Uncharacterized protein OS=Cof...	[more]
A0A022PSD0_ERYGU	6.3e-39	80.6	Uncharacterized protein OS=Ery...	[more]
A0A067K1U2_JATCU	1.1e-38	83.5	Uncharacterized protein OS=Jat...	[more]

BLAST of Spo23468.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5


Match Name	E-value	Identity	Description
PRP4L_ARATH	4.2e-36	68.4	U4/U6 small nuclear ribonucleo...	[more]
PRP4_BOVIN	2.1e-27	51.0	U4/U6 small nuclear ribonucleo...	[more]
PRP4_PONAB	2.1e-27	51.0	U4/U6 small nuclear ribonucleo...	[more]
PRP4_HUMAN	2.1e-27	51.0	U4/U6 small nuclear ribonucleo...	[more]
PRP4_MOUSE	2.7e-27	51.0	U4/U6 small nuclear ribonucleo...	[more]

BLAST of Spo23468.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5


Match Name	E-value	Identity	Description
AT2G41500.1	2.4e-37	68.4	WD-40 repeat family protein / ...	[more]
AT2G05720.1	5.4e-34	65.9	Transducin/WD40 repeat-like su...	[more]
AT1G61210.1	6.9e-13	39.0	Transducin/WD40 repeat-like su...	[more]
AT1G11160.1	1.2e-12	37.9	Transducin/WD40 repeat-like su...	[more]
AT5G23430.1	2.6e-12	35.6	Transducin/WD40 repeat-like su...	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001680	WD40 repeat	PFAM	PF00400	WD40	coord: 32..69 score: 0.0016coord: 1..26 score: 9.
IPR001680	WD40 repeat	SMART	SM00320	WD40_4	coord: 29..69 score: 1.0E-5coord: 1..26 score:
IPR001680	WD40 repeat	PROFILE	PS50082	WD_REPEATS_2	coord: 1..35 score: 15.02coord: 36..78 score: 13
IPR015943	WD40/YVTN repeat-like-containing domain	GENE3D	2.130.10.10		coord: 1..87 score: 6.0
IPR017986	WD40-repeat-containing domain	PROFILE	PS50294	WD_REPEATS_REGION	coord: 1..102 score: 23
IPR017986	WD40-repeat-containing domain	unknown	SSF50978	WD40 repeat-like	coord: 1..92 score: 1.13
IPR019775	WD40 repeat, conserved site	PROSITE	PS00678	WD_REPEATS_1	coord: 13..27 scor
IPR027106	U4/U6 small nuclear ribonucleoprotein Prp4	PANTHER	PTHR19846	WD40 REPEAT PROTEIN	coord: 1..92 score: 3.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008380	RNA splicing
molecular_function	GO:0005515	protein binding

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo27181	0.66	Barchart \| Table