Spo23505 (gene)

Overview
NameSpo23505
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionPhotosystem II reaction center Psb28 protein
Locationchr6 : 25859907 .. 25862548 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AATTGAGGTTGGCATGAGTGGTTAAGGGCCTCTTGCTCCTTAACCAAGGTCTCGGGTTCGAGCCTTGGGAATGGAAAAAATCTCAACTGGGAGGGATGCTGCCCATCGAGGTACCCATGCAAACTCCCACGGGAGATTACCTCGCCGAAGGCGGTGGGAACTCCTCGTAGTAGAACCAAAAAAAAAAAAAAGCAAATATCCATTTTCTAAATTACCAATGTGAGAGTAGTAAAATAGTTTGTGGAAGTGAAAAAATTGGGAATTGGAGATTTGCTCTTTACAGTTTGCTGCAGGATACCCCTTTGGCTCAAGTGAATGGCTGATATTGTAACACACCAACGTCTGGATTCCAGATGACCCATATCAATATCATCTTCATCATCTCTCCTCAAAAAAATCCACTGAATTTATTAAAATAAAAAATAAACATTTTCTGGGTATTCCATTATCAAACTCCATGGCAGCATCTCTGCAATCTCTTACTTGTTCTTCTCCACTCTCTCAATGCTCCTCTCACAAATCTTCCTCTAAACCAGGTATCTCCCTTTCCCTCTCCTCTAAATTTGCAGAAAAGTAAGCATTATTGATTATGCATTCCTGCATTGCAGTAATTTTCGAATTTGAATTCCTTAATTTCTAACTGTTAGTGTTGGGAAATTTGGGAAATTTGGGAATTTTCTCAGTTTTCGAAGGGTTTGGTTCAATCTTTGTTAATTTAATTGAATTTAACAAAAAAAAAAAAGTTTATCCCAAGAAGCTGTGTAATTGGCATTGGTATATGAGGGTTTAGCAAAGTGATTAAAGTTTCCCTTTCTTATAGTTTCATTAAATGGTTACTAAATTTGCTTTAAACTCTGTTTTTGTCCACCTAGAACAACTTATGTTATGTGAATTTTGTCAATAAACATAGGGAATAGGTTTTAGCTTGAATATTTTAGCTTCAAATTTATGTGAATTTCATCAATAAACAACTTATGTTATGGGAATCTTGTCAATGAAGGGCTAATATTGAGGAAAATTGAGCAATTCAGCTTTGCAATTTCAGGTTGTTTGTGAGTGAGTGAGTGATAGAGAATAGAATTATCTTAGGATATAAAGTGTACAAATCTAGTCACATTAGTTTTCCTAATATAATTAGGATTATTGTAACACTATAAATATGATCAATGGAATACATTCCAGTTCACAGAGTTTTCACGAATCTAACAGTGAGGTTGTTCTTCGTTTTGAGCTTTTTGGATACAACTGGTGAATTGTATACACCATGATTAGTCAACCTAAAAACTTGTACTTGCAATAGGGGGACTTAAATATGATTATACAAGGATACACCTGATGTATACAAGACTTACTATTTTGTATTTTGTTTAGGCGAGTGGGTGGTTTGGGGTAGGAGTTTTAAAATTCTTGATTCTAGAGTCATTTTACTGACAAGGCATCTGTTATTTAAGTGTAAAATTTAAGGTTTTAGTTCCTGCTTATTGTTCTTGGACTCAAGGTTTAGAAATTTAGGAATGTTTGGGAAATGAAGCAATTTTGGCAATCTTTCTTGGCCGTCTGGTGTCTGAGTAATGCATTGGAGCATCAGATATTAAGCTAGTATTGTTTGTAGATAGTATGACGAATCTGATGTAGTCTTTATCTGGTTTATCAGGCATTTGTGTTTTCTCTTGGGCTACTCCCAAGCGTGTACACTCTTCATTCAATGGACTTCAGCTAAGGTTACGTCCATTGAGATGGGCATCACAAAGGTCATTTTCTGCACCTGTTGGTCAGATTGTGATGATGGTTCAACCCAAAATTCAGTTCGTTCAAGGGACCGATGAACTTACAATACCAGATGTGAACTTAACCAAATCAAAGGATGGGACTAATGGTGCTGCTATATTCAGATTTGATCAGCCCTCTGTCTTTGACTCATCCAAGGAGGTCGGTGATATAACTGGTTTCTACATGATTGATGAGGAAGGTGTTCTTTCTTCCAACAGTGTGAATGCAAGGTTTATCAATGGGAAACCAGCAGGCATTGAAGCAAAGTACATCATGCGCACCCCGAAAGACTGGGACAGGTTCATGAGATTCATGGAACGCTACGCCAACGCAAACGGTTTGCAATTCGTCAAAAGTTGAGGCAATATTGTACATCCTTCTTTTTTTCTTCTGTAAACCCGATTTTAGTATGTTTATGTGAGTTGAGTATATAGCTCAAAAGCTTGAATCTTTTCATGAAGATTAATGCTGCTTTCTTGTGCACCAATTGATTGATTATATGTGTTCTCTGACCTATTTTTTATTTTTATTTTTGAATAGTTTGGGTCTGATAATGCTGGGTGAGTGACTATATCATTCAATGTAAGACATAAATTTCAAATAATAGATATTTGAATCAGCATTCATTAATATGGTATCAGCATCAAGTACCAACATAAATGAAGTAATCTTGTACTCTAAAGAAATTCTCTATCAGTAATTTAGGGACCAAAGCTCAAATAACATAAAGAACATGTTACAAATCCTTCTGAATCAGTAGCAGGTCAGAGGAATGTATTCCTTTCCCTAGCAACTATGAAACGTTCTTCAATATGATTGCTTGCTTACCCAAGACACTGTAATTGGGCTTCTAACCCTGTATAGGTTTCGAC

mRNA sequence

AATTGAGGTTGGCATGAGTGGTTAAGGGCCTCTTGCTCCTTAACCAAGGTCTCGGGTTCGAGCCTTGGGAATGGAAAAAATCTCAACTGGGAGGGATGCTGCCCATCGAGGTACCCATGCAAACTCCCACGGGAGATTACCTCGCCGAAGGCGGTGGGAACTCCTCGTAGTAGAACCAAAAAAAAAAAAAAGCAAATATCCATTTTCTAAATTACCAATGTGAGAGTAGTAAAATAGTTTGTGGAAGTGAAAAAATTGGGAATTGGAGATTTGCTCTTTACAGTTTGCTGCAGGATACCCCTTTGGCTCAAGTGAATGGCTGATATTGTAACACACCAACGTCTGGATTCCAGATGACCCATATCAATATCATCTTCATCATCTCTCCTCAAAAAAATCCACTGAATTTATTAAAATAAAAAATAAACATTTTCTGGGTATTCCATTATCAAACTCCATGGCAGCATCTCTGCAATCTCTTACTTGTTCTTCTCCACTCTCTCAATGCTCCTCTCACAAATCTTCCTCTAAACCAGGCATTTGTGTTTTCTCTTGGGCTACTCCCAAGCGTGTACACTCTTCATTCAATGGACTTCAGCTAAGGTTACGTCCATTGAGATGGGCATCACAAAGGTCATTTTCTGCACCTGTTGGTCAGATTGTGATGATGGTTCAACCCAAAATTCAGTTCGTTCAAGGGACCGATGAACTTACAATACCAGATGTGAACTTAACCAAATCAAAGGATGGGACTAATGGTGCTGCTATATTCAGATTTGATCAGCCCTCTGTCTTTGACTCATCCAAGGAGGTCGGTGATATAACTGGTTTCTACATGATTGATGAGGAAGGTGTTCTTTCTTCCAACAGTGTGAATGCAAGGTTTATCAATGGGAAACCAGCAGGCATTGAAGCAAAGTACATCATGCGCACCCCGAAAGACTGGGACAGGTTCATGAGATTCATGGAACGCTACGCCAACGCAAACGGTTTGCAATTCGTCAAAAGTTGAGGCAATATTGTACATCCTTCTTTTTTTCTTCTGTAAACCCGATTTTAGTATGTTTATGTGAGTTGAGTATATAGCTCAAAAGCTTGAATCTTTTCATGAAGATTAATGCTGCTTTCTTGTGCACCAATTGATTGATTATATGTGTTCTCTGACCTATTTTTTATTTTTATTTTTGAATAGTTTGGGTCTGATAATGCTGGGTGAGTGACTATATCATTCAATGTAAGACATAAATTTCAAATAATAGATATTTGAATCAGCATTCATTAATATGGTATCAGCATCAAGTACCAACATAAATGAAGTAATCTTGTACTCTAAAGAAATTCTCTATCAGTAATTTAGGGACCAAAGCTCAAATAACATAAAGAACATGTTACAAATCCTTCTGAATCAGTAGCAGGTCAGAGGAATGTATTCCTTTCCCTAGCAACTATGAAACGTTCTTCAATATGATTGCTTGCTTACCCAAGACACTGTAATTGGGCTTCTAACCCTGTATAGGTTTCGAC

Coding sequence (CDS)

ATGGCAGCATCTCTGCAATCTCTTACTTGTTCTTCTCCACTCTCTCAATGCTCCTCTCACAAATCTTCCTCTAAACCAGGCATTTGTGTTTTCTCTTGGGCTACTCCCAAGCGTGTACACTCTTCATTCAATGGACTTCAGCTAAGGTTACGTCCATTGAGATGGGCATCACAAAGGTCATTTTCTGCACCTGTTGGTCAGATTGTGATGATGGTTCAACCCAAAATTCAGTTCGTTCAAGGGACCGATGAACTTACAATACCAGATGTGAACTTAACCAAATCAAAGGATGGGACTAATGGTGCTGCTATATTCAGATTTGATCAGCCCTCTGTCTTTGACTCATCCAAGGAGGTCGGTGATATAACTGGTTTCTACATGATTGATGAGGAAGGTGTTCTTTCTTCCAACAGTGTGAATGCAAGGTTTATCAATGGGAAACCAGCAGGCATTGAAGCAAAGTACATCATGCGCACCCCGAAAGACTGGGACAGGTTCATGAGATTCATGGAACGCTACGCCAACGCAAACGGTTTGCAATTCGTCAAAAGTTGA

Protein sequence

MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23505.1Spo23505.1mRNA


Homology
[Close]
BLAST of Spo23505.1 vs. NCBI nr
Match: gi|902237451|gb|KNA24800.1| (hypothetical protein SOVF_012060 [Spinacia oleracea])

HSP 1 Score: 370.5 bits (950), Expect = 1.600e-99
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

		  

Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS
Sbjct: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
           FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG
Sbjct: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184
[Close]
BLAST of Spo23505.1 vs. NCBI nr
Match: gi|731347208|ref|XP_010684868.1| (PREDICTED: photosystem II reaction center Psb28 protein [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 323.2 bits (827), Expect = 3.000e-85
Identity = 158/184 (85.87%), Postives = 169/184 (91.85%), Query Frame = 1 

		  

Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAA+LQSLTCS P S CSSHK SS  GIC+ S A P+RVHSSFNGLQLRLRPLRW SQRS
Sbjct: 1   MAAALQSLTCSYPPSHCSSHKYSSYSGICLLSSANPQRVHSSFNGLQLRLRPLRWVSQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
            SAP+G+IVMMVQPKIQF+QGTDELTIPDV LTKSKDGTNG A+F+FDQPSVFDSSKEVG
Sbjct: 61  LSAPIGRIVMMVQPKIQFIQGTDELTIPDVKLTKSKDGTNGMALFKFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVL + SVNARFINGKPAG+EAKYIMRTP+DWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLQTTSVNARFINGKPAGVEAKYIMRTPRDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184
[Close]
BLAST of Spo23505.1 vs. NCBI nr
Match: gi|694413976|ref|XP_009335229.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic-like [Pyrus x bretschneideri])

HSP 1 Score: 237.7 bits (605), Expect = 1.700e-59
Identity = 121/182 (66.48%), Postives = 137/182 (75.27%), Query Frame = 1 

		  

Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  SSPLSQC          +C   W   +   S+FNG  LR+   +WA  R  +
Sbjct: 2   ATLQSLAFSSPLSQCLQQPRLHSGLLC---WGVHRSAESTFNGKSLRVSRPQWAPLRRCT 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
                I MMV+PKIQF+QGTDE TIPDV LTKSKDGTNG AIF+F+QPSVFDSS E GDI
Sbjct: 62  QASRSIKMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAIFKFEQPSVFDSSGEFGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVLSS  VNA+F+NGKPAGIEAKYIMRTP+DWDRFMRFMERYAN NGL F+
Sbjct: 122 TGFYMIDEEGVLSSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANDNGLSFI 180

Query: 183 KS 185
           K+
Sbjct: 182 KN 180
[Close]
BLAST of Spo23505.1 vs. NCBI nr
Match: gi|694314287|ref|XP_009370523.1| (PREDICTED: photosystem II reaction center Psb28 protein-like [Pyrus x bretschneideri])

HSP 1 Score: 237.3 bits (604), Expect = 2.200e-59
Identity = 121/182 (66.48%), Postives = 137/182 (75.27%), Query Frame = 1 

		  

Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  SSP+SQC          +C   W   +   S+FNG  LR+   +WA  R  +
Sbjct: 2   ATLQSLAFSSPVSQCLQQPRLHSGLLC---WGVHRIAESTFNGQSLRVSRPQWAPLRRCT 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
                I MMV+PKIQF+QGTDE TIPDV LTKSKDGTNG AIFRF+QPSVFDSS E GDI
Sbjct: 62  QVSRSITMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAIFRFEQPSVFDSSGEFGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVLSS  VNA+F+NGKPAGIEAKYIMRTP+DWDRFMRFMERYAN NGL F+
Sbjct: 122 TGFYMIDEEGVLSSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANDNGLSFI 180

Query: 183 KS 185
           K+
Sbjct: 182 KT 180
[Close]
BLAST of Spo23505.1 vs. NCBI nr
Match: gi|657981392|ref|XP_008382711.1| (PREDICTED: photosystem II reaction center PSB28 protein, chloroplastic-like [Malus domestica])

HSP 1 Score: 235.7 bits (600), Expect = 6.300e-59
Identity = 120/181 (66.30%), Postives = 135/181 (74.59%), Query Frame = 1 

		  

Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  SSPLSQC          +C   W   +   S+FNG  LR+   +WA  R  +
Sbjct: 2   ATLQSLAFSSPLSQCLQQPRLHSGLLC---WGVXRSAESTFNGKSLRVSRPQWAPLRRCT 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
                I MMV+PKIQF+QGTDE TIPDV LTKSKDGTNG A F+F+QPSVFDSS E GDI
Sbjct: 62  QASRSIKMMVKPKIQFIQGTDEQTIPDVRLTKSKDGTNGVAXFKFEQPSVFDSSGEFGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVLSS  VNA+F+NGKPAGIEAKYIMRTP+DWDRFMRFMERYAN NGL F+
Sbjct: 122 TGFYMIDEEGVLSSVDVNAKFVNGKPAGIEAKYIMRTPRDWDRFMRFMERYANDNGLSFI 179

Query: 183 K 184
           K
Sbjct: 182 K 179
[Close]
BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0K9RZ56_SPIOL (Photosystem II reaction center Psb28 protein OS=Spinacia oleracea GN=SOVF_012060 PE=3 SV=1)

HSP 1 Score: 370.5 bits (950), Expect = 1.100e-99
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 1 

		  

Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS
Sbjct: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
           FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG
Sbjct: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184
[Close]
BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0J8ERL5_BETVU (Photosystem II reaction center Psb28 protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_7g166610 PE=3 SV=1)

HSP 1 Score: 323.2 bits (827), Expect = 2.100e-85
Identity = 158/184 (85.87%), Postives = 169/184 (91.85%), Query Frame = 1 

		  

Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRS 60
           MAA+LQSLTCS P S CSSHK SS  GIC+ S A P+RVHSSFNGLQLRLRPLRW SQRS
Sbjct: 1   MAAALQSLTCSYPPSHCSSHKYSSYSGICLLSSANPQRVHSSFNGLQLRLRPLRWVSQRS 60

Query: 61  FSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVG 120
            SAP+G+IVMMVQPKIQF+QGTDELTIPDV LTKSKDGTNG A+F+FDQPSVFDSSKEVG
Sbjct: 61  LSAPIGRIVMMVQPKIQFIQGTDELTIPDVKLTKSKDGTNGMALFKFDQPSVFDSSKEVG 120

Query: 121 DITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQ 180
           DITGFYMIDEEGVL + SVNARFINGKPAG+EAKYIMRTP+DWDRFMRFMERYANANGLQ
Sbjct: 121 DITGFYMIDEEGVLQTTSVNARFINGKPAGVEAKYIMRTPRDWDRFMRFMERYANANGLQ 180

Query: 181 FVKS 185
           FVKS
Sbjct: 181 FVKS 184
[Close]
BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: D7U379_VITVI (Photosystem II reaction center Psb28 protein OS=Vitis vinifera GN=VIT_07s0005g04400 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.800e-59
Identity = 119/181 (65.75%), Postives = 142/181 (78.45%), Query Frame = 1 

		  

Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFS 62
           A+LQSL  +SPLS C   K S   G+   SWA  +  HSSFNG  L L   +WA+ +  S
Sbjct: 2   AALQSLAFTSPLSHCC--KQSPLSGLS--SWAVHRSAHSSFNGRSLHLPRPQWAALKRSS 61

Query: 63  APVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDI 122
           +  G I MMV+P IQF+QGTDE T+PDV LT+S+DGTNG AIF+F+QPSVFDSS EVGDI
Sbjct: 62  STSGLITMMVKPTIQFIQGTDEQTVPDVRLTQSRDGTNGMAIFKFEQPSVFDSSGEVGDI 121

Query: 123 TGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFV 182
           TGFYMIDEEGVL S  V+A+FINGKP+GIEAKY+MR+P++WDRFMRFMERY+N NGLQFV
Sbjct: 122 TGFYMIDEEGVLQSVDVSAKFINGKPSGIEAKYVMRSPREWDRFMRFMERYSNENGLQFV 178

Query: 183 K 184
           K
Sbjct: 182 K 178
[Close]
BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0B0MPB9_GOSAR (Photosystem II reaction center Psb28 protein OS=Gossypium arboreum GN=F383_22079 PE=3 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.200e-58
Identity = 122/186 (65.59%), Postives = 141/186 (75.81%), Query Frame = 1 

		  

Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQL-----RLRPLRWAS 62
           A+LQSL  +SP+S    ++  S  G+   SW   +  +S FNG  L     R+ P RW S
Sbjct: 2   ATLQSLALASPVSHSFLNQPRSLSGMP--SWVAHRSANSQFNGQSLQVAQSRISPTRWNS 61

Query: 63  QRSFSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSK 122
           +R        IVMMV+PKIQF+QGTDE TIPDV LTKS+DGTNG AIFRFDQPSVFDSS 
Sbjct: 62  KRC-----SPIVMMVKPKIQFIQGTDEQTIPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 121

Query: 123 EVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANAN 182
           EVGDITGFYMIDEEGVL S  VNA+F+NGKPAGIEAKYIMRTP++WDRFMRFMERY+N N
Sbjct: 122 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 183 GLQFVK 184
           GLQF+K
Sbjct: 182 GLQFIK 180
[Close]
BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Match: A0A0D2QS78_GOSRA (Photosystem II reaction center Psb28 protein OS=Gossypium raimondii GN=B456_001G182100 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.700e-58
Identity = 122/186 (65.59%), Postives = 140/186 (75.27%), Query Frame = 1 

		  

Query: 3   ASLQSLTCSSPLSQCSSHKSSSKPGICVFSWATPKRVHSSFNGLQL-----RLRPLRWAS 62
           A+LQSL  +SP+S    ++  S  GI   SW   +  +S FNG  L     R+ P RW S
Sbjct: 2   ATLQSLALASPVSHSFLNQPRSLSGIP--SWVAHRSANSQFNGQSLQVAQSRISPTRWNS 61

Query: 63  QRSFSAPVGQIVMMVQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSK 122
           +R        IVMMV+PKIQF+QGTDE T PDV LTKS+DGTNG AIFRFDQPSVFDSS 
Sbjct: 62  KRC-----SPIVMMVKPKIQFIQGTDEQTTPDVRLTKSRDGTNGMAIFRFDQPSVFDSSS 121

Query: 123 EVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANAN 182
           EVGDITGFYMIDEEGVL S  VNA+F+NGKPAGIEAKYIMRTP++WDRFMRFMERY+N N
Sbjct: 122 EVGDITGFYMIDEEGVLQSVDVNAKFVNGKPAGIEAKYIMRTPREWDRFMRFMERYSNEN 180

Query: 183 GLQFVK 184
           GLQF+K
Sbjct: 182 GLQFIK 180
[Close]
BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_ORYSJ (Photosystem II reaction center PSB28 protein, chloroplastic OS=Oryza sativa subsp. japonica GN=PSB28 PE=2 SV=2)

HSP 1 Score: 209.5 bits (532), Expect = 3.000e-53
Identity = 113/186 (60.75%), Postives = 139/186 (74.73%), Query Frame = 1 

		  

Query: 1   MAASLQSLTCSSPLSQCSSHKSSSKPGICVF--SWATPKRVHSSFNGLQLRLRPLRWASQ 60
           MAA +++L  +SP+S      + ++P  C    S    + +HSSF G+ L+ R  + AS 
Sbjct: 1   MAAVMKALAVASPIS------ARAQPRRCPAGSSGGPSQSLHSSFGGVSLQCRRTKPASL 60

Query: 61  RSFSAPVGQIVMMV-QPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSK 120
              S P  Q+VMM  +P IQF+QGTDE TIPDV LTKS+DGTNG AIF FDQPSVFDSS 
Sbjct: 61  HR-SRPSMQVVMMAARPAIQFIQGTDEQTIPDVRLTKSRDGTNGVAIFTFDQPSVFDSSA 120

Query: 121 EVGDITGFYMIDEEGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANAN 180
           E+GDITGFYMID+EGVL S  V+A+F+NGKPA IEAKY+MRTP++WDRFMRFMERY+ AN
Sbjct: 121 ELGDITGFYMIDDEGVLQSVDVSAKFVNGKPALIEAKYVMRTPREWDRFMRFMERYSQAN 179

Query: 181 GLQFVK 184
           GLQFVK
Sbjct: 181 GLQFVK 179
[Close]
BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_ARATH (Photosystem II reaction center PSB28 protein, chloroplastic OS=Arabidopsis thaliana GN=PSB28 PE=2 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.700e-49
Identity = 100/167 (59.88%), Postives = 124/167 (74.25%), Query Frame = 1 

		  

Query: 19  SHKSSSKPGICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFSAPVG--QIVMMVQPKI 78
           S ++  + GI + S +      SSF G  + L P    S R+   P+    I MMV+P +
Sbjct: 16  SQRNVPRSGIVLSSCSVLPIKSSSFTGSPVSL-PRAQPSSRTALRPMKPVSITMMVKPAL 75

Query: 79  QFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDITGFYMIDEEGVLSS 138
           QF+QGTDE+TIPDV LT+S+DG+NG A+F FDQPSVFDSS EVG+ITG YMIDEEGV+ S
Sbjct: 76  QFIQGTDEMTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQS 135

Query: 139 NSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVK 184
             VNARF+NGKP GI AK+IMR+PK+WDRFMRFMERY++ NGLQFVK
Sbjct: 136 TDVNARFVNGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVK 181
[Close]
BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_PHATC (Photosystem II reaction center Psb28 protein OS=Phaeodactylum tricornutum (strain CCAP 1055/1) GN=psb28 PE=3 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 4.100e-34
Identity = 65/114 (57.02%), Postives = 87/114 (76.32%), Query Frame = 1 

		  

Query: 72  VQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFD-SSKEVGDITGFYMIDE 131
           ++ KIQF++G DE  +PDV LT+SKDG+ G A FRF  P++ D ++ + G+ITG Y+IDE
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSKDGSTGTATFRFKNPNILDKTTAKEGEITGMYLIDE 60

Query: 132 EGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS 185
           EG+L +  VNARF+NGKP  IE+ YIM++P+ WDRFMRFMERY   NGL F K+
Sbjct: 61  EGILETRDVNARFVNGKPEAIESIYIMKSPEAWDRFMRFMERYGETNGLVFSKA 114
[Close]
BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_ODOSI (Photosystem II reaction center Psb28 protein OS=Odontella sinensis GN=psb28 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.100e-33
Identity = 64/114 (56.14%), Postives = 87/114 (76.32%), Query Frame = 1 

		  

Query: 72  VQPKIQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFD-SSKEVGDITGFYMIDE 131
           ++ KIQF++G DE  +PDV LT+S+DG+ G A FRF  P++ D S+ + G+ITG Y+ID+
Sbjct: 1   MEAKIQFIKGLDEKVLPDVRLTRSRDGSTGTATFRFKNPNILDKSTAKEGEITGMYLIDQ 60

Query: 132 EGVLSSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS 185
           EG L +  VNA+FINGKP  IE+ YIM++P+ WDRFMRFMERY  +NGL F K+
Sbjct: 61  EGTLETRDVNAQFINGKPEAIESIYIMKSPEAWDRFMRFMERYGESNGLVFTKA 114
[Close]
BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Match: PSB28_GUITH (Photosystem II reaction center Psb28 protein OS=Guillardia theta GN=psb28 PE=3 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.100e-33
Identity = 67/110 (60.91%), Postives = 83/110 (75.45%), Query Frame = 1 

		  

Query: 76  IQFVQGTDELTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEV-GDITGFYMIDEEGVL 135
           IQF+QG +E  IPDV LT+S+DG+ G A FRF  P V ++   V G+ITG Y+IDEEG L
Sbjct: 4   IQFIQGVNEDVIPDVRLTRSRDGSTGTATFRFANPKVLEAQSSVKGNITGMYLIDEEGQL 63

Query: 136 SSNSVNARFINGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVKS 185
            +  VNARF+NGKP GIEA YIM++ +DWDRFMRFMERY+  NGL F K+
Sbjct: 64  VTRDVNARFVNGKPQGIEAVYIMQSKEDWDRFMRFMERYSEDNGLSFTKA 113
[Close]
BLAST of Spo23505.1 vs. TAIR (Arabidopsis)
Match: AT4G28660.2 (photosystem II reaction center PSB28 protein)

HSP 1 Score: 195.7 bits (496), Expect = 2.600e-50
Identity = 99/159 (62.26%), Postives = 120/159 (75.47%), Query Frame = 1 

		  

Query: 27  GICVFSWATPKRVHSSFNGLQLRLRPLRWASQRSFSAPVG--QIVMMVQPKIQFVQGTDE 86
           GI + S +      SSF G  + L P    S R+   P+    I MMV+P +QF+QGTDE
Sbjct: 39  GIVLSSCSVLPIKSSSFTGSPVSL-PRAQPSSRTALRPMKPVSITMMVKPALQFIQGTDE 98

Query: 87  LTIPDVNLTKSKDGTNGAAIFRFDQPSVFDSSKEVGDITGFYMIDEEGVLSSNSVNARFI 146
           +TIPDV LT+S+DG+NG A+F FDQPSVFDSS EVG+ITG YMIDEEGV+ S  VNARF+
Sbjct: 99  MTIPDVKLTRSRDGSNGMALFSFDQPSVFDSSGEVGEITGLYMIDEEGVIQSTDVNARFV 158

Query: 147 NGKPAGIEAKYIMRTPKDWDRFMRFMERYANANGLQFVK 184
           NGKP GI AK+IMR+PK+WDRFMRFMERY++ NGLQFVK
Sbjct: 159 NGKPEGIVAKHIMRSPKEWDRFMRFMERYSDQNGLQFVK 196
The following BLAST results are available for this feature:
BLAST of Spo23505.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902237451|gb|KNA24800.1|1.6e-99100.hypothetical protein SOVF_0120... [more]
gi|731347208|ref|XP_010684868.1|3.0e-8585.8PREDICTED: photosystem II reac... [more]
gi|694413976|ref|XP_009335229.1|1.7e-5966.4PREDICTED: photosystem II reac... [more]
gi|694314287|ref|XP_009370523.1|2.2e-5966.4PREDICTED: photosystem II reac... [more]
gi|657981392|ref|XP_008382711.1|6.3e-5966.3PREDICTED: photosystem II reac... [more]
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BLAST of Spo23505.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9RZ56_SPIOL1.1e-99100.Photosystem II reaction center... [more]
A0A0J8ERL5_BETVU2.1e-8585.8Photosystem II reaction center... [more]
D7U379_VITVI5.8e-5965.7Photosystem II reaction center... [more]
A0A0B0MPB9_GOSAR2.2e-5865.5Photosystem II reaction center... [more]
A0A0D2QS78_GOSRA3.7e-5865.5Photosystem II reaction center... [more]
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BLAST of Spo23505.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSB28_ORYSJ3.0e-5360.7Photosystem II reaction center... [more]
PSB28_ARATH2.7e-4959.8Photosystem II reaction center... [more]
PSB28_PHATC4.1e-3457.0Photosystem II reaction center... [more]
PSB28_ODOSI2.1e-3356.1Photosystem II reaction center... [more]
PSB28_GUITH2.1e-3360.9Photosystem II reaction center... [more]
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BLAST of Spo23505.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G28660.22.6e-5062.2photosystem II reaction center... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005610Photosystem II Psb28, class 1PRODOMPD012692coord: 77..176
score: 4.0
IPR005610Photosystem II Psb28, class 1HAMAPMF_01370PSII_Psb28coord: 73..182
score: 29
IPR005610Photosystem II Psb28, class 1PFAMPF03912Psb28coord: 76..181
score: 1.5
IPR005610Photosystem II Psb28, class 1TIGRFAMsTIGR03047TIGR03047coord: 76..182
score: 1.8
NoneNo IPR availablePANTHERPTHR34963FAMILY NOT NAMEDcoord: 3..184
score: 3.9E
NoneNo IPR availablePANTHERPTHR34963:SF2PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN, CHLOROPLASTICcoord: 3..184
score: 3.9E

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0035725 sodium ion transmembrane transport
biological_process GO:0006522 alanine metabolic process
biological_process GO:0070981 L-asparagine biosynthetic process
biological_process GO:0015721 bile acid and bile salt transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0000023 maltose metabolic process
biological_process GO:0006849 plasma membrane pyruvate transport
biological_process GO:0043085 positive regulation of catalytic activity
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006508 proteolysis
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0015976 carbon utilization
biological_process GO:0001731 formation of translation preinitiation complex
biological_process GO:0006094 gluconeogenesis
biological_process GO:0006096 glycolytic process
biological_process GO:0016310 phosphorylation
biological_process GO:0006144 purine nucleobase metabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006531 aspartate metabolic process
biological_process GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione
biological_process GO:0006446 regulation of translational initiation
biological_process GO:0006555 methionine metabolic process
biological_process GO:0006431 methionyl-tRNA aminoacylation
biological_process GO:0048481 plant ovule development
biological_process GO:0006448 regulation of translational elongation
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0005887 integral component of plasma membrane
cellular_component GO:0009507 chloroplast
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016282 eukaryotic 43S preinitiation complex
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0033290 eukaryotic 48S preinitiation complex
cellular_component GO:0005852 eukaryotic translation initiation factor 3 complex
cellular_component GO:0009654 photosystem II oxygen evolving complex
cellular_component GO:0005739 mitochondrion
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0050897 cobalt ion binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0030955 potassium ion binding
molecular_function GO:0003743 translation initiation factor activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0050833 pyruvate transmembrane transporter activity
molecular_function GO:0008508 bile acid:sodium symporter activity
molecular_function GO:0004825 methionine-tRNA ligase activity
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0003746 translation elongation factor activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity
molecular_function GO:0004386 helicase activity
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity
molecular_function GO:0031177 phosphopantetheine binding
molecular_function GO:0004743 pyruvate kinase activity
RNA-Seq Expression