Spo23605 (gene)

Overview
NameSpo23605
Typegene
OrganismSpinacia oleracea (Spinach)
Description30S ribosomal protein S13
Locationchr2 : 51314295 .. 51323660 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACATCAACACTTTCTCTCTCTTCCAAAGGGTCACAAACAGATAAGGAAGTCGGGAAGATAACCCATTTTTGAGCTTCATCTTCTTCCTCTCGCTTACTCGCGCTCTTTCTCGCTCCTTCGAAAATGGCGCACACTCTAGCGACGCCAGTGGCACCATCAGTGTCGCTGATATGCAACACAAAGCTTTCTGTTTCTCTCTCCTCCTCTTCCCTATCATTCCGCCCCGTAAACCCTAAGGTTAGTTTCTTTTTGTTTGTTTGTTTGGCTAATTGATGTTCTTGTTTTTGGTTGAATTGAAATGCGGAACTAACTGATAAATTGAATGAATTGCGTAGAATGGCGGTGGGCTAAGCATAAAATGTGTGCGAGTGGGTAATGTTGAAATTCCGAACAACAAGAGGGTGGAATACTCTCTTCAATACATCCATGGAATTGGGCGTTCTAGGGCTCGTCAAATTCTCTGTGATTTGACTTTGGAAAACAAACTCACTAAGGAATTATCTGAAGATGAACTTCTCCAAGTCAGAGATGAAGTCACCAAGTACATGATTGAGGGTGACCTGGTATTTTCCTTTTTTACCCATTTTTTGTGTTGCTGAAATTTGAATTTGGGAATTTGGGCTGGTGGTTTTGTTTCAACTTAATTGTTGTTGTTGGGTGTCATAATTCTTGCAATTGGAACTCTATGGGAGATGATAAATGTAGATAGAATTGTGGATTTAATCATCCTAAATCAGGGATATTTTGATAATTATACATGGTTAGACATTAATTGACAATTAGTATTCAATATATAATTTCATCTGAATGTCCAAGAGAGTGGATAATTTGACCAGAATAATCCTACTTGTGGTGTTTAAGGATTCAGTGTTATTGAATAAATTTGAGTAATATATGGTTCTTGATTGGAGTTTGGGATTTTATACACAGAGGCGATTCAACGCTATAGCAATTAGGCGATTGAAGGAGATACAATGCTACAGAGGGGTCAGACACATTCAGGGTTTACCTTGCCGTGGACAAAGAACCAAAAACAACTGCAGGACATTGAAGAGGGGTAAAAGAGTTCAAATTGCTGGCAAGAAGAAGCCCCCTGGTCCTAAATAGTTGAAAACTGGTTTGCCTCTTTTTCTCCTCCTGTAATTCGGTGCAATTTGGGTATTCAGCTTCTCTGATTGTAGTTTATTCCGGAATGCATTGCTTGTAATTTTGTAATATTGACATCTCCTGTTGTTATGGGTTCAAAGTAAATCTACTTGTTTCTCATGCTTCTGCATCGATATGCATCTGTTTGACATTCATTCTATATTAATCGAGTCAAGTTAACAATTCCGTATGATATGCATTTCCTATGTTGTCGTTTAATTTTTACTTCATCATGGAGTAATGATGGGAAGCTGGTTAAAAAGTTCCTTTGAACCTTATTATAAAGATATCATTTTTTTTTGGCGAATGAGGGGTTGGGAAAAGGGTGATAACTGATTCCGGATGGAGGGAGCACATCTTTTAGCAATTTTAGTTGTAGTTTGTGAAAGTTCCACCAAAGCGAGATGAATGGATAAAGATGCTACCCTCCTAAAGCGAGATAAGTGCATTTGTTTAAGGTTTTTTCTCGTCACCCTTCTGCTATCTGAATTTAGCTTAGCCTTTGGTCTTTTTTCTACTGTTTCAAGGGGTTATAAGATATAAGTTATTTTTTCGGACACAACAACAAAGGAGAATTTAAGGTCTTAACACCCTTTTCTAGCTCTATTAGCAAGATTATGGGTCCTTTTAACTACATTTGTACTTACCTTTAACTATATGTCTACTTACCTTAAGACATGAGGCTAATTTCTTGATACCTTTTAATTGCTGAAAGCATGGTTTTATCTACATTTGTACTTACCTTTAACTATATGTTCATACAATCTCTTATTATTTCCTCCCTTATTATGGTCATGTAATAAACTCAGTCTACTCACTCAATTTAAGATAATGGAAGGTTGTTTTATTGATAGATAAAACTTAAAGCTCGCAAGTTAGAAGATAATGCCCGAGAACATTCGAGAGGTTCTCTAACTCTCCAACTCACCCCAATACAACCAACATGCCTACTGATTTTCTTACTCTCCTATTTAATTGCTAACATGCTAGAATAAGACAAAACTCATTAAACCAAAAGTACTATGTCATAAACTGCAACTGGGGTGCCTCCACTAAGTGGGGTGGTGCTTTCCTTTTAACCTGGTAACTGATGTGTCTGCTCCCACCTTCACCTGCAGCGCTAACTGTTTCTTCCCCTTCTTGTGTACACTCGGATTGCGGGAGGGTTCCTATGGTTCATTGCAATGTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCACACCTACCTTAGACCTGTAGCGCTAGTTGTTTCTTCCCCTTCTTGTGTACACTCGGATTGCGAGAGGGTCCCTATGGTTCATTGCAATAGTCCCCCCCCCCCAAAAAAAAAATATGCACTTTGTCCTCAAGGTGGAAATCCGTGAACCGCTGTGTGGTCATGGATGCCTCCACCCAAGTGGCTTCAAATGTGAGCCCCCCTTTCCACGTCAATAGTAATTATGTTCCTCTATCATTCCCTCTTCAAATTTCCAGCATTTCCCCGGGAACTGTGAGTAGCTCTAAATCCGAGCTGAGTTGCTCCAGAATATTTGGAGTCACTGTGTGCGTTTCGCTTGAGTTAGGATATGTGAAACACGAGGTGCAACTTACATGTATCAGGTAGTAGGCGTTTGTAGGCCCCTTTGCCCATACATCGAGTAATTGGGAAGGGACCATAGAACCTTGCAGCAAGCTTCTCGAAGGGCCTCTTGGCTAAGGACTTTTTTTCGTTATGGTTGCAGTTTCTAAGTAAACCATGTCCCCCACTTCGAACTCATCCTCTCTTCTTTTGCGGTCTGCATACTCTCCTTCATCCTGTGCTGGGCTTTGATAAAATTCAAATTAAGCTCATCCAACATAAAATTTTGGTCCTGCAACATCTCCTCCAACTACCCACGGCTTTGTGCTGCAGATTTATCTTCATGAGTTTAAGGGGTTTCCTTCCATACACCACCTTGAATGAGGACACTTTAGTTGAGTTGTGGGGGGTGGTATTGTAAGAAAATTCGGCCCATGGAAGCCATTTAGCCCAAGCTTTAGGCTGTCCGGAAGCAAAGCAACATAAGTATGTCTTAAGTTTCTTGTTCAGTACTTATGTTGCCGTTTGTTTGAGGATGATAGGTCGTGCTTCGCTTGAGAGTCGTGCCTTGCACTCGGAAAAGCTCCCTCCAAAATATACTCAAGAAAATTCGATCATGGTCATAAAGTATGGAGGATGGGAACCCGTATAATCTGACTACTTCCTTGACAAACACATCAACTACAATTACTGCCGCGAAGGGGTTGCGGAGGCCAATGAAATTGCCTTATTTCGACAAGCGGTCGACCACCACTAATATGGTGTCAACTCCCTTAATGGAAGTCCTATGAAGTCCATGGACACTTCATCCCATATTAGTGAAGGAACAAGCAGTAGTTGGAGTAACCCAGTTGATCCCAACTGGGAAAACTTGTTTTGTTGAACTTCACACTTCCTCACATAATCAGTCACGTCCCTCCTCATGCCGATCAACATCATTCTTGTGCTATCCTCAAATACGTCTTGACCTCCCCGCGTGCCCTCCAATTGCCGAATCATGGTACTCCGTCAACAACTCCAGAATGAAAGTTGATGTTTTCGAAATCACATACCTTTGTTTGTAAACGAGAATCTCATCAACCATCTCAAAACCACTCTCCCTTCCCCTGTATCACTCCTTGGAGTGTGTTACATCTTGCTTTACCTCTTTCTCTAAGGCTCTCCAATCCACCCCTTTAGTTGACGCAAGTGCGCCCAAAGCAATCTCACCTTCTGTTTTGCGCGACAGCGCATCGGCCACCCGGTTGGAGGAGCCCGACTTGTACTGAATTTCGAAATCGAATCCCATCAAGTTGCTCACCTATTTTTGATAATCGGCACCGATTTCTCTCTGTTGTGTGATAAACTTCAAACTTTGCTGATCACTACGCACTATAATACGTAGCCCCTAAAGATAATGCTTCCACTTCAATATGGACAAACAAACAACCATAAGTTCCTTCTCATAGACCGATTTGGTTCCCACAGACAGCTAAACGCTACTGGGGTTCCCTCTTGCATCAACACGACCCCTAGGCCATAACCCGAGGCGTCGGTCTCTACCACAAAATCTTTCTTGAAATTAGGCATTGCGAGCACAAGCGCAACACACATTGCTTTTTTAAGAGCCTCAAAAGCCTTGGTATCCTTGGTGGACCCCCCAAATGCATCTTTCTTGAGCTACACGGTTAGGGGTTGAGGGAGTTGTGCATAACGGACGATGAACTTTCTGTAGTAACCCGTCAATCCCAAGAAGCTTTGGTAGCTTCCCTTGATAATAAATATCACTCTAATTAATGATGCGAACACTTATGATTCATGAAGGAGGGGGTAAGGGTGCTAGTGAAGTTGAACCGGCTGAATAAAGAGAATTGTGGAGACTTGCAAGTTGAAGTGCCACTAATTTTACAAGAACTTCGCTCAGAATTTTGTGGGGTGTTCGAGATGGCGGAGGGGCTGCCACCACCACGTAGCCATGAACACTGGATCATTTTGAGGGGGAAACAACCTTGTTGGGGTCAAACCATAGTTACCCACAGTCTCAAAAGGATTAAATCGAACGCTTAATTAAGGAGATGTTAGTTGTCGGTATCATCAAACCCTCAACTATACCATTCTCTAGCCCAATACTTCTTGTGAAGAAAAAAGGCGGCTCTTGGTGCTTTTGTGTCAATTACCACTCCCCTTCTCCAACCGGTTCAACTCCACTAGCACCCCTATCCTTCTTTCATGAATCATGAGTGTTCCCATCATTGATCGTAGTGATACTTTTGAACGATCTAAAGAAGGGTCACCTCTCAAAGTCATGGTTTCTCCCTCCACCTGATACCCACTAGTGTTCACAACTCCCAACTTCTCGAGCCTTTGTACCCCTAGGATCAAGGCGGAGTGGCCCAAATGCAACGGTATGAAATCCTCCCGTATCACCACTCCTCCTTCAGCCCCAACTCTACCCCTTGGCATATTCCTGTTCCCTGTACGGAGTCACCGTTGCCAAGAGACACCAAAACCACCGGATTAAGGTCCCTCCACCTCGGCCACAGAGATGAATGGGTTGCCCCAGGGTCAATCATCACCACGACTTCCTGGTCGTAACTTCATCGTCTTCGGGATTAACCCTCTTAACTTCATCGTCTCGGGTCAGTAAGCCCAACCATCTTGTTTAAAGAGATGGGTGGGGCTCTCCTCCAACGACGGTGACGCCAATTCATCTGTTGCCCACTCGTCTTCATCTACCGGAATCACGCTCAACTCTTTCCTCTTGCACATGTGCCCAATTCTCCATTTATCATCACACCTAAAACAATGGCCTTTCGCCTTCTTTTCCGCCAACTCCCTCTCTGTGAGTGTTTCACCTCACCCGTACCGTGGAAAGATTTTGTTGCCGGTCGATGGAGGCGATCGCACTCGTTCCTCCTTGGAATTTCGAGGTTAGGTGGTGTGACTTCCAATAGACAAGTTCTACCGTTGTGAACCTAACCTGCTATTATAGATAGAAAAAGATCCGTTTCAGTTTGACTTAAAGGTGGCCCTCTCTTCTTTGGTCCATTCGCCCGAACCCGCTGCTCAATTCCGGTTGCCACATCCATGGCTTGATCTAAGTCATATGGGTTGGGCAACCTTAGTTCTACCTTACTTCTCACTCCTTAAAATCCCACCCAATTGGGTCGCTTCCATCAAAGTACGTTATCTCCAACTTCCAACATTTCCACTTCCGACCACCTTCAAACCCGTCGTTCTCCCTGACCTCCGATTTCGTCGTGCCTTCATCCTCACCCTCTGGTGGTGTCCTCCCTTCCATCCACTTTCTCATTTCATCTTGGAATTATTGTTGTTGCATCTTGATCTCTGCTATGTGCCATGTTTGCTCTTGGATGGTGTGCTTCAGCCCACCCATCTTTTGAGCTACTGCTTCAGCTACTATGCGCCCAATGATCTCTGCGAAACCTTCTAACGAACCGAGACGATCCCTTAGTTCTCCGATAGCCTGCTCAGCTCCGTCCAAACGTTGGGTGTTAGAGGCCGGATGCCAAGTTTGTAATGAACTCAGTCTACTCACTCAATTTAGGATAATGGAAGACTGCTATATTGATAGATAAAGCTTAAAGCTTGCAAATTACAAGATAAAGCCTGAGAACATTCGAGAGAACTCTCTAACTCTCCAACTTAGCCCAATACAACCAACATGCCTACTGATTTTCTTCCTCTTCTATTTAATTGCTAACATGCTAAATAAGTCAAAACTCGTTAAACCAAAAGTACTAGGACAGAAAGTGCCTCCACTAAGTGGGATGGTGCCTTCCTTCTGACCTGGTAGCTGATGTGTCTGCTCCCACCTTGTCCTGCAGTGCTGGCTGTTTCTTCCCCCTTCTTGTGTACACTCGGATAGCAGGAGTGTCCCTCTGGTGCATTGCAGGTCAGCGTTGAAGTTCAATCCTTTCATAATTGCACAGCGTTCTGTTTCTTAATGACGTTTTTGCAAAGATCCTCCTCCCATCATTTGATCATCTCTCTATTCAAGTAGACTACCTACTGCTGCTCTGCATTCTTTTCTTCCTTGCCTTCCTTTTTCCAAGAACCATCAACAATAATAGATATTGCTTAGGATGGATTTCTATAGTCTAATACACCTCTGTCATGCTTGTGCTAGTTGCATGACATGCAACAATTTCCTTTGCCTGCTAAATAGAAGCTTATTTGATTCAATCCAGCGTTTGTTCTTTCTTGGATTACAGTCAAGACCCATGATTGAATTGAACTTGGTTTCTTTACATAATTTCATTTCTGTGAAGCCACAAGCCCAAAGGGTTGCTGTAAACTCCACAACCCTCCCCATGCCATGTTCCAATTTCGATATAACCAGTATTAATTGCTCCCGTGCCTAACCGTCTCACTTTCCAGTTTTTTTTTTATCATCTGGTTATCTCTAAACAAGTGTTAGAAAGATTCTTGGTCTCGGCTCAAATCACATATCCTCCTTCCATGACATCTATATTTTTTTCCGGAAGAGTCTCCTTTGTAGGCATAGCTCTCCGAAACCATATTCCTGCTAATTGCAATGTCTTTCCTGCTTGCAAGAGCCAATAACCTAATTATAAGCTGCTGTGTATCCTCACTGGTGATATAAGTAACCTTCCTCTGCCGCTGGTCCATCAAATTTGTCCCAAATCATATTTGTGTTCCATGTATTTGATGGCGAAATTAATCTGCTACCAAATAGGTCTCTTCTGAAATGAAGGTTGATTATTCTCTTTGAAAGAAATTCTTCTATATTTATTGTGTATCTTTGTATTCCCTTCTGTTGCACTTTTGACTACACTTCTAGCTTCCCACCTGATATAAAGTCACATTTGTATTTATTATGGAGTACCTTTGAAGAATCTACATGCCAGTAAGTTAGGGTTAGATAAGTGCATTATTCAAGCTCGTAGATTTCTCTTTCCTAACTCTCTCTCGGACTCGAGTCTTCCTAGTACTTTCTTTCTTTTTCAATATGTAAGAGTGCAACATCGAGGGTATTTTGTTCAGACTTCAGAGCAGAGACTGGTAAGAAATATATTGGAAAGGATGTGCAATGCCATTGCTATCTTTATGCTGTTGATTAACTGGAGCTATCCTGAATATGATAAAGTGGTTTGAATATGAATATGAGCTGTCCAGATTTGATTTTTTTCGTACTTTGTTATCAACTACTATGGATGTTTTATGCTGTAAAAGTTCTTATCCAAACTGTTATACTTCGTAGTTGTACTAGTTATCACCGTTATAAGCTCTCTCCGCGGCTACTTACAACTTGCAGGCAGGCAAAATAAACTGTCAGCCGTGTAATACCAGCCTCAGAAGGAAAATGTATACGATTCCAGAGAAGCTTTCTTTAAATGAATTTGGTTATTTACCAGTGTACACAATGTAGAATTCCTCTGAAGACCGGCTTCAAAACTTAAAATGGTAAGGTTGTCTGCGAGAAGAGCTGGTATTCTTATTTCATTTTAGTCTATAGCATATTATTGATAGGAATCCAACAATGTTGTCTATACGTTGGACTTCGGAGGCCATTCGACGATAAGTAGAACGCGGTATGCGGCAAATTTTGTGTATAATCCAAATTGCGGGTGACTTGTCACCTTTGACTTGCATCTAGCAAGTAGCAAGCTTAAAGCCAGTGTCTTGAATTTCTGCATTACTACTCTTGGGAGAACATTTACTTTGGTGTGAATAAGCAGCAAAGGGAAATACAAAATACACGAGCCCTATGGGTTAACCTTCGGGCCAAGACACCATTGGTATTTTGGAACATTGAGTTGCTTAATACACGAGGATTTTCGTAGGTGAATTACGTCTTATATTTGCGCTTTGAGTATGACTGATTGTCATTTAGATAAGATTTGGTTTGGGTCTGGCTACAATGGGTATAGTTAATCGTGAAAACTAATCAATAGTCGGCATTAATTATTGTGATAACTAATCCGTAATCAGGATTAACTTTCTTTCTATTCTGTTTTCAAAAAGATAAAAATAAGAGTTTTTTGGATAAACAACAGACGGATTACGGATTAATTTTCGTAGTCGCAAACACATTGCATAGATATGCATAGAGTTGGTGACCGATTAATTCCGTCTCTGCTTGTTTCAATAATATGTAAGATAAAAGACCGATTTAATTGCTATCTAACACACACTTAGCGACTCCTAATATCTGTCGCTATGATAATTAAAGATAATGCACAGATTTAGCGATTGATGTACTTCCGTCGCTAAGAATTTTCAAAAGCTGCAAAGATTAGCGACTGTTTCTTATCGTCGCTAAGAAATTCACAAAATAGTGAAACTACCCAGATTTAGCGACTGAAGATGTCGGTCGCTAAGTTAATTATAGTTTTGCAACTTATTAGCGACCGAAGAAATTCCGTCGCTAAAAAATACAAAAATTGCCAGATTTAGCGACTGATGCTTGCGGTCGCTAAGAAATTCAAAAATTACCCAGATTAAGCGACCGACGTATTTCCGTCGCTAACTTTTTTAAAAATATGTAGGTACAGGTTTAGCGGCTGTGGATTTCCGGG

mRNA sequence

ACATCAACACTTTCTCTCTCTTCCAAAGGGTCACAAACAGATAAGGAAGTCGGGAAGATAACCCATTTTTGAGCTTCATCTTCTTCCTCTCGCTTACTCGCGCTCTTTCTCGCTCCTTCGAAAATGGCGCACACTCTAGCGACGCCAGTGGCACCATCAGTGTCGCTGATATGCAACACAAAGCTTTCTGTTTCTCTCTCCTCCTCTTCCCTATCATTCCGCCCCGTAAACCCTAAGAATGGCGGTGGGCTAAGCATAAAATGTGTGCGAGTGGGTAATGTTGAAATTCCGAACAACAAGAGGGTGGAATACTCTCTTCAATACATCCATGGAATTGGGCGTTCTAGGGCTCGTCAAATTCTCTGTGATTTGACTTTGGAAAACAAACTCACTAAGGAATTATCTGAAGATGAACTTCTCCAAGTCAGAGATGAAGTCACCAAGTACATGATTGAGGGTGACCTGAGGCGATTCAACGCTATAGCAATTAGGCGATTGAAGGAGATACAATGCTACAGAGGGGTCAGACACATTCAGGGTTTACCTTGCCGTGGACAAAGAACCAAAAACAACTGCAGGACATTGAAGAGGGGTAAAAGAGTTCAAATTGCTGGCAAGAAGAAGCCCCCTGGTCCTAAATAGTTGAAAACTGGTACAGGTTTAGCGGCTGTGGATTTCCGGG

Coding sequence (CDS)

ATGGCGCACACTCTAGCGACGCCAGTGGCACCATCAGTGTCGCTGATATGCAACACAAAGCTTTCTGTTTCTCTCTCCTCCTCTTCCCTATCATTCCGCCCCGTAAACCCTAAGAATGGCGGTGGGCTAAGCATAAAATGTGTGCGAGTGGGTAATGTTGAAATTCCGAACAACAAGAGGGTGGAATACTCTCTTCAATACATCCATGGAATTGGGCGTTCTAGGGCTCGTCAAATTCTCTGTGATTTGACTTTGGAAAACAAACTCACTAAGGAATTATCTGAAGATGAACTTCTCCAAGTCAGAGATGAAGTCACCAAGTACATGATTGAGGGTGACCTGAGGCGATTCAACGCTATAGCAATTAGGCGATTGAAGGAGATACAATGCTACAGAGGGGTCAGACACATTCAGGGTTTACCTTGCCGTGGACAAAGAACCAAAAACAACTGCAGGACATTGAAGAGGGGTAAAAGAGTTCAAATTGCTGGCAAGAAGAAGCCCCCTGGTCCTAAATAG

Protein sequence

MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23605.1Spo23605.1mRNA


Homology
[Close]
BLAST of Spo23605.1 vs. NCBI nr
Match: gi|902195571|gb|KNA12871.1| (hypothetical protein SOVF_121110 [Spinacia oleracea])

HSP 1 Score: 336.3 bits (861), Expect = 3.200e-89
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPVAPSVSLICNTKLSVSLSSSSL+FRPVNPKNGGGLSIKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 172
[Close]
BLAST of Spo23605.1 vs. NCBI nr
Match: gi|731310634|ref|XP_010669711.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 269.6 bits (688), Expect = 3.700e-69
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL+IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLTIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRS ARQILCDL+ ENKLTK+LSEDEL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLQYIHGIGRSTARQILCDLSFENKLTKDLSEDELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQ LPCRGQRTKNNCRTL  K+ K+VQI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQSLPCRGQRTKNNCRTLKAKKSKKVQIPGKKKAPGPK 171
[Close]
BLAST of Spo23605.1 vs. NCBI nr
Match: gi|731310636|ref|XP_010669800.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 262.3 bits (669), Expect = 5.900e-67
Identity = 137/174 (78.74%), Postives = 151/174 (86.78%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLCIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSL+YIHGIGRS ARQILCDL+ ENKLTK+LSE+EL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLKYIHGIGRSTARQILCDLSFENKLTKDLSENELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRH Q LPCRGQRTKNNCRTL  K+ K++QI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHTQSLPCRGQRTKNNCRTLKAKKSKKLQIPGKKKAPGPK 171
[Close]
BLAST of Spo23605.1 vs. NCBI nr
Match: gi|225459459|ref|XP_002285833.1| (PREDICTED: 30S ribosomal protein S13, chloroplastic [Vitis vinifera])

HSP 1 Score: 252.7 bits (644), Expect = 4.700e-64
Identity = 130/167 (77.84%), Postives = 148/167 (88.62%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATP+APS+SLICNT+  +S  S++LSF    P   GGLSIKC RVG VEIPN+KR
Sbjct: 1   MAQALATPLAPSLSLICNTRNPLS-PSNNLSFSTPAPPKFGGLSIKCARVGGVEIPNSKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSR++QILCDL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GKRV IAGKKK
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKRVSIAGKKK 165
[Close]
BLAST of Spo23605.1 vs. NCBI nr
Match: gi|976920017|gb|KVI04771.1| (Ribosomal protein S13 [Cynara cardunculus var. scolymus])

HSP 1 Score: 251.9 bits (642), Expect = 8.000e-64
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATPVAPS+SLIC T  S   S +SLSF   NP   GGLSI+C RVG VEIPNNKR
Sbjct: 1   MAQALATPVAPSLSLICTTSSSFKSSPTSLSFSTFNPPKVGGLSIRCARVGGVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           V+YSLQYIHGIGR+RA +IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VQYSLQYIHGIGRTRALEILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 170
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKKAP 168
[Close]
BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R024_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_121110 PE=3 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 2.200e-89
Identity = 171/172 (99.42%), Postives = 172/172 (100.00%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPVAPSVSLICNTKLSVSLSSSSL+FRPVNPKNGGGLSIKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLAFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI
Sbjct: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPPGPK 172
[Close]
BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D748_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000340 PE=3 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 2.600e-69
Identity = 141/174 (81.03%), Postives = 153/174 (87.93%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL+IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLTIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRS ARQILCDL+ ENKLTK+LSEDEL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLQYIHGIGRSTARQILCDLSFENKLTKDLSEDELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRHIQ LPCRGQRTKNNCRTL  K+ K+VQI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHIQSLPCRGQRTKNNCRTLKAKKSKKVQIPGKKKAPGPK 171
[Close]
BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A0J8D2N6_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g000330 PE=3 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.100e-67
Identity = 137/174 (78.74%), Postives = 151/174 (86.78%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MAHTLATPV PS+SLICNT  S+SLSSSSLSF        GGL IKCVRVGNVEIPNNKR
Sbjct: 1   MAHTLATPVTPSLSLICNTMSSLSLSSSSLSFPS---SKVGGLCIKCVRVGNVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSL+YIHGIGRS ARQILCDL+ ENKLTK+LSE+EL+Q+RD+V+ YMIEGDLRRFN +
Sbjct: 61  VEYSLKYIHGIGRSTARQILCDLSFENKLTKDLSENELIQIRDKVSTYMIEGDLRRFNLL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTL--KRGKRVQIAGKKKPPGPK 173
           AIRRLKEIQCYRGVRH Q LPCRGQRTKNNCRTL  K+ K++QI GKKK PGPK
Sbjct: 121 AIRRLKEIQCYRGVRHTQSLPCRGQRTKNNCRTLKAKKSKKLQIPGKKKAPGPK 171
[Close]
BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: E0CRC2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03850 PE=3 SV=1)

HSP 1 Score: 252.7 bits (644), Expect = 3.300e-64
Identity = 130/167 (77.84%), Postives = 148/167 (88.62%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATP+APS+SLICNT+  +S  S++LSF    P   GGLSIKC RVG VEIPN+KR
Sbjct: 1   MAQALATPLAPSLSLICNTRNPLS-PSNNLSFSTPAPPKFGGLSIKCARVGGVEIPNSKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           VEYSLQYIHGIGRSR++QILCDL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VEYSLQYIHGIGRSRSKQILCDLGMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GKRV IAGKKK
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKRVSIAGKKK 165
[Close]
BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Match: A0A118K2Q9_CYNCS (Ribosomal protein S13 OS=Cynara cardunculus var. scolymus GN=Ccrd_016905 PE=3 SV=1)

HSP 1 Score: 251.9 bits (642), Expect = 5.600e-64
Identity = 128/169 (75.74%), Postives = 145/169 (85.80%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  LATPVAPS+SLIC T  S   S +SLSF   NP   GGLSI+C RVG VEIPNNKR
Sbjct: 1   MAQALATPVAPSLSLICTTSSSFKSSPTSLSFSTFNPPKVGGLSIRCARVGGVEIPNNKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           V+YSLQYIHGIGR+RA +IL DL +ENK+TK+LSE+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  VQYSLQYIHGIGRTRALEILNDLKMENKITKDLSEEELITLRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKKPP 170
           AIRRLKEIQCYRG+RHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK P
Sbjct: 121 AIRRLKEIQCYRGIRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKKAP 168
[Close]
BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 1.200e-59
Identity = 119/167 (71.26%), Postives = 140/167 (83.83%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  +A PVA S+SLICN   S  LS ++L+    N  N   LSI+C RVG VEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           +EYSLQYIHGIGR+RARQIL DL +ENK+TK+++E+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AI+RLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKK 166
[Close]
BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2)

HSP 1 Score: 161.4 bits (407), Expect = 8.900e-39
Identity = 90/154 (58.44%), Postives = 111/154 (72.08%), Query Frame = 1 

		  

Query: 5   LATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNG---GGLSIKCVRVGNVEIPNNKRV 64
           ++ P+A S     +  LS    SSS+SF P   K G   GGL I+C+R+G VEIPN+KRV
Sbjct: 7   VSVPIATS-----SLPLSARGRSSSVSF-PAPKKGGIGHGGLQIECIRIGGVEIPNHKRV 66

Query: 65  EYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAIA 124
           EYSLQYIHGIGRSR+RQIL DL  +NK+TK+LSE+E++ +R E          +RFN +A
Sbjct: 67  EYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIILRKE----------KRFNRVA 126

Query: 125 IRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK 156
           I RLKEI+CYRG+RH  GLP RGQRTKNNCRTLK
Sbjct: 127 IERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLK 144
[Close]
BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 9.800e-30
Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = 1 

		  

Query: 42  GLSIKCVRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQV 101
           GL ++ +RVGN E+PNNK ++  LQ ++GIGR ++ Q+LC L + NKL ++L+  EL+ +
Sbjct: 26  GLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDL 85

Query: 102 RDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQ 161
           R+EV ++    +LRR     I+RL E+ CYRG RH  GLPCRGQRT  N RT K+GK V 
Sbjct: 86  REEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNART-KKGKAVA 145

Query: 162 IAGKKKPP 170
           IAGKKK P
Sbjct: 146 IAGKKKAP 152
[Close]
BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RS13_MYCA5 (30S ribosomal protein S13 OS=Mycoplasma arthritidis (strain 158L3-1) GN=rpsM PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.100e-25
Identity = 67/119 (56.30%), Postives = 84/119 (70.59%), Query Frame = 1 

		  

Query: 49  RVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTL-ENKLTKELSEDELLQVRDEVTK 108
           RV NVEIPN KR   SL YI GIG++ A QIL D  + ENK  + LSE+EL ++R+E  K
Sbjct: 3   RVLNVEIPNKKRAVISLTYIFGIGKTLASQILKDANVDENKKVESLSEEELTRIREEAKK 62

Query: 109 YMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKK 167
           Y+ EGDLRR   + I+RL EI+ YRG+RH +GLP RGQ T+ N RT ++G R  IAGKK
Sbjct: 63  YVTEGDLRREINLNIKRLMEIKSYRGIRHRKGLPVRGQCTQKNART-RKGPRKTIAGKK 120
[Close]
BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Match: RS13_ACICJ (30S ribosomal protein S13 OS=Acidiphilium cryptum (strain JF-5) GN=rpsM PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.100e-25
Identity = 64/121 (52.89%), Postives = 90/121 (74.38%), Query Frame = 1 

		  

Query: 49  RVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTL-ENKLTKELSEDELLQVRDEVTK 108
           R+  V IP+NKRV  SL+YI+GIG ++AR+I   L + E+K   +LSEDE++++R+ + +
Sbjct: 3   RIAGVNIPSNKRVLISLRYIYGIGPAKAREICQSLEIGEDKRVNQLSEDEIMKIRELIDR 62

Query: 109 -YMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKK 168
            Y +EGDLRR  A+ I+RL ++ CYRG+RH +GLP RGQRT  N RT ++GK V IAGKK
Sbjct: 63  DYRVEGDLRREVAMNIKRLVDLGCYRGLRHRKGLPVRGQRTHTNART-RKGKAVAIAGKK 122
[Close]
BLAST of Spo23605.1 vs. TAIR (Arabidopsis)
Match: AT5G14320.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 230.7 bits (587), Expect = 6.700e-61
Identity = 119/167 (71.26%), Postives = 140/167 (83.83%), Query Frame = 1 

		  

Query: 1   MAHTLATPVAPSVSLICNTKLSVSLSSSSLSFRPVNPKNGGGLSIKCVRVGNVEIPNNKR 60
           MA  +A PVA S+SLICN   S  LS ++L+    N  N   LSI+C RVG VEIP NKR
Sbjct: 1   MAQMVAMPVAHSLSLICNWAKSNPLSRNTLALPASNTPNKQSLSIRCARVGGVEIPANKR 60

Query: 61  VEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQVRDEVTKYMIEGDLRRFNAI 120
           +EYSLQYIHGIGR+RARQIL DL +ENK+TK+++E+EL+ +RDEV+KYMIEGDLRRFNA+
Sbjct: 61  IEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELIILRDEVSKYMIEGDLRRFNAL 120

Query: 121 AIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQIAGKKK 168
           AI+RLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK GK++ IAGKKK
Sbjct: 121 AIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLK-GKKIAIAGKKK 166
[Close]
BLAST of Spo23605.1 vs. TAIR (Arabidopsis)
Match: AT1G77750.1 (Ribosomal protein S13/S18 family)

HSP 1 Score: 131.3 bits (329), Expect = 5.500e-31
Identity = 66/128 (51.56%), Postives = 90/128 (70.31%), Query Frame = 1 

		  

Query: 42  GLSIKCVRVGNVEIPNNKRVEYSLQYIHGIGRSRARQILCDLTLENKLTKELSEDELLQV 101
           GL ++ +RVGN E+PNNK ++  LQ ++GIGR ++ Q+LC L + NKL ++L+  EL+ +
Sbjct: 26  GLRVQGIRVGNAEVPNNKPLKTGLQEVYGIGRRKSHQVLCHLGITNKLARDLTGKELIDL 85

Query: 102 RDEVTKYMIEGDLRRFNAIAIRRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKRGKRVQ 161
           R+EV ++    +LRR     I+RL E+ CYRG RH  GLPCRGQRT  N RT K+GK V 
Sbjct: 86  REEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSRHRHGLPCRGQRTSTNART-KKGKAVA 145

Query: 162 IAGKKKPP 170
           IAGKKK P
Sbjct: 146 IAGKKKAP 152
The following BLAST results are available for this feature:
BLAST of Spo23605.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|902195571|gb|KNA12871.1|3.2e-8999.4hypothetical protein SOVF_1211... [more]
gi|731310634|ref|XP_010669711.1|3.7e-6981.0PREDICTED: 30S ribosomal prote... [more]
gi|731310636|ref|XP_010669800.1|5.9e-6778.7PREDICTED: 30S ribosomal prote... [more]
gi|225459459|ref|XP_002285833.1|4.7e-6477.8PREDICTED: 30S ribosomal prote... [more]
gi|976920017|gb|KVI04771.1|8.0e-6475.7Ribosomal protein S13 [Cynara ... [more]
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BLAST of Spo23605.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0K9R024_SPIOL2.2e-8999.4Uncharacterized protein OS=Spi... [more]
A0A0J8D748_BETVU2.6e-6981.0Uncharacterized protein OS=Bet... [more]
A0A0J8D2N6_BETVU4.1e-6778.7Uncharacterized protein OS=Bet... [more]
E0CRC2_VITVI3.3e-6477.8Putative uncharacterized prote... [more]
A0A118K2Q9_CYNCS5.6e-6475.7Ribosomal protein S13 OS=Cynar... [more]
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BLAST of Spo23605.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
RR13_ARATH1.2e-5971.230S ribosomal protein S13, chl... [more]
RR13_SPIOL8.9e-3958.430S ribosomal protein S13, chl... [more]
RT13_ARATH9.8e-3051.5Small ribosomal subunit protei... [more]
RS13_MYCA51.1e-2556.330S ribosomal protein S13 OS=M... [more]
RS13_ACICJ1.1e-2552.830S ribosomal protein S13 OS=A... [more]
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BLAST of Spo23605.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G14320.16.7e-6171.2Ribosomal protein S13/S18 fami... [more]
AT1G77750.15.5e-3151.5Ribosomal protein S13/S18 fami... [more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001892Ribosomal protein S13HAMAPMF_01315Ribosomal_S13_S18coord: 47..165
score: 24
IPR001892Ribosomal protein S13PFAMPF00416Ribosomal_S13coord: 49..153
score: 5.8
IPR001892Ribosomal protein S13PROFILEPS50159RIBOSOMAL_S13_2coord: 50..156
score: 3
IPR010979Ribosomal protein S13-like, H2THunknownSSF46946S13-like H2TH domaincoord: 48..158
score: 2.94
IPR018269Ribosomal protein S13, conserved sitePROSITEPS00646RIBOSOMAL_S13_1coord: 132..145
scor
IPR02743730s ribosomal protein S13, C-terminalGENE3D4.10.910.10coord: 122..167
score: 6.9
NoneNo IPR availableGENE3D1.10.8.50coord: 47..116
score: 6.3
NoneNo IPR availablePANTHERPTHR1087130S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18coord: 43..171
score: 4.3

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0006119 oxidative phosphorylation
biological_process GO:0015979 photosynthesis
biological_process GO:1901576 organic substance biosynthetic process
biological_process GO:1901360 organic cyclic compound metabolic process
biological_process GO:0046483 heterocycle metabolic process
biological_process GO:0034641 cellular nitrogen compound metabolic process
biological_process GO:0006725 cellular aromatic compound metabolic process
biological_process GO:0006096 glycolytic process
biological_process GO:0010015 root morphogenesis
biological_process GO:0010075 regulation of meristem growth
biological_process GO:0008361 regulation of cell size
biological_process GO:0009664 plant-type cell wall organization
biological_process GO:0009832 plant-type cell wall biogenesis
biological_process GO:0007389 pattern specification process
biological_process GO:0009926 auxin polar transport
biological_process GO:0009060 aerobic respiration
biological_process GO:0007030 Golgi organization
biological_process GO:0010027 thylakoid membrane organization
biological_process GO:0005975 carbohydrate metabolic process
biological_process GO:0006979 response to oxidative stress
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0019538 protein metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0044262 cellular carbohydrate metabolic process
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0009058 biosynthetic process
biological_process GO:0006972 hyperosmotic response
biological_process GO:0006833 water transport
biological_process GO:0006511 ubiquitin-dependent protein catabolic process
biological_process GO:0009266 response to temperature stimulus
biological_process GO:0051788 response to misfolded protein
biological_process GO:0046686 response to cadmium ion
biological_process GO:0080129 proteasome core complex assembly
biological_process GO:0009853 photorespiration
biological_process GO:0019288 isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process GO:0048653 anther development
biological_process GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway
biological_process GO:0043900 regulation of multi-organism process
biological_process GO:0050832 defense response to fungus
biological_process GO:0009595 detection of biotic stimulus
biological_process GO:0006508 proteolysis
biological_process GO:0019760 glucosinolate metabolic process
biological_process GO:0009867 jasmonic acid mediated signaling pathway
biological_process GO:0000165 MAPK cascade
biological_process GO:0031348 negative regulation of defense response
biological_process GO:0006098 pentose-phosphate shunt
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0010207 photosystem II assembly
biological_process GO:0015986 ATP synthesis coupled proton transport
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0006612 protein targeting to membrane
biological_process GO:0010363 regulation of plant-type hypersensitive response
biological_process GO:0006412 translation
biological_process GO:0009773 photosynthetic electron transport in photosystem I
biological_process GO:0035304 regulation of protein dephosphorylation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0010200 response to chitin
biological_process GO:0015995 chlorophyll biosynthetic process
biological_process GO:0009697 salicylic acid biosynthetic process
biological_process GO:0019252 starch biosynthetic process
biological_process GO:0006364 rRNA processing
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0005840 ribosome
cellular_component GO:0009507 chloroplast
cellular_component GO:0031977 thylakoid lumen
cellular_component GO:0009840 chloroplastic endopeptidase Clp complex
cellular_component GO:0009534 chloroplast thylakoid
cellular_component GO:0016020 membrane
cellular_component GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0005737 cytoplasm
cellular_component GO:0010287 plastoglobule
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
cellular_component GO:0044434 chloroplast part
cellular_component GO:0010319 stromule
cellular_component GO:0005622 intracellular
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004601 peroxidase activity
molecular_function GO:0008236 serine-type peptidase activity
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003723 RNA binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0004252 serine-type endopeptidase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046961 proton-transporting ATPase activity, rotational mechanism
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0004427 inorganic diphosphatase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0051920 peroxiredoxin activity
RNA-Seq Expression