Spo23674 (gene) | SpinachBase

Overview


Name	Spo23674
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Zinc-ribbon domain protein
Location	chr2 : 52569686 .. 52570021 (+)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTTGTGGGAGGAGTTGAGCAGCAGGTTGGACAAGTACTGAAAACAGGAATTAGCAGGTGCATCAGCTGTAATTCCAAAGCTGATCTTGTCAAATACGACAACGTTTTGAAGGTTTTCTTTGTACCTGTTTGGAAATGGCCTGGTAAAAAACCTCTCCTTCATTGTAACACCTGCAATCTCTTTTTCCCTGAATCATTTTCCATTCCTCCTGCAACGACGTCGTTTCCACAGCCCGGTGAAATCGATGTTTTACGGTGTCAATCTTGTGCTCGTGTTGTTGAGGCTGGTTACCGATTTTGCCCCTTTTGTGGTGTTTCTTTGTAA

mRNA sequence

ATGTTCTTCTTCTTTGTGGGAGGAGTTGAGCAGCAGGTTGGACAAGTACTGAAAACAGGAATTAGCAGGTGCATCAGCTGTAATTCCAAAGCTGATCTTGTCAAATACGACAACGTTTTGAAGGTTTTCTTTGTACCTGTTTGGAAATGGCCTGGTAAAAAACCTCTCCTTCATTGTAACACCTGCAATCTCTTTTTCCCTGAATCATTTTCCATTCCTCCTGCAACGACGTCGTTTCCACAGCCCGGTGAAATCGATGTTTTACGGTGTCAATCTTGTGCTCGTGTTGTTGAGGCTGGTTACCGATTTTGCCCCTTTTGTGGTGTTTCTTTGTAA

Coding sequence (CDS)

ATGTTCTTCTTCTTTGTGGGAGGAGTTGAGCAGCAGGTTGGACAAGTACTGAAAACAGGAATTAGCAGGTGCATCAGCTGTAATTCCAAAGCTGATCTTGTCAAATACGACAACGTTTTGAAGGTTTTCTTTGTACCTGTTTGGAAATGGCCTGGTAAAAAACCTCTCCTTCATTGTAACACCTGCAATCTCTTTTTCCCTGAATCATTTTCCATTCCTCCTGCAACGACGTCGTTTCCACAGCCCGGTGAAATCGATGTTTTACGGTGTCAATCTTGTGCTCGTGTTGTTGAGGCTGGTTACCGATTTTGCCCCTTTTGTGGTGTTTCTTTGTAA

Protein sequence

MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCNTCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo23674.1	Spo23674.1	mRNA

Homology

[Close]

BLAST of Spo23674.1 vs. NCBI nr
Match: gi|902236716|gb|KNA24514.1| (hypothetical protein SOVF_015100 [Spinacia oleracea])

HSP 1 Score: 245.0 bits (624), Expect = 6.300e-62
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN
Sbjct: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 112
           TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL
Sbjct: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 111

[Close]

BLAST of Spo23674.1 vs. NCBI nr
Match: gi|731333270|ref|XP_010677641.1| (PREDICTED: uncharacterized protein LOC104893234 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 199.1 bits (505), Expect = 4.000e-48
Identity = 90/111 (81.08%), Postives = 98/111 (88.29%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFF FVGGV+Q+VGQVLKTG+SRCI+CNSKADLVKYDNVLK+FFVPVWKWPGKKPLLHCN
Sbjct: 1   MFFLFVGGVDQKVGQVLKTGVSRCINCNSKADLVKYDNVLKLFFVPVWKWPGKKPLLHCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 112
           TCNLFFPES S    TTS   P + DVLRC SCAR+V+A YRFCPFCGVSL
Sbjct: 61  TCNLFFPESLS---KTTSSSLPSDNDVLRCHSCARLVDADYRFCPFCGVSL 108

[Close]

BLAST of Spo23674.1 vs. NCBI nr
Match: gi|720083174|ref|XP_010242814.1| (PREDICTED: uncharacterized protein LOC104587062 [Nelumbo nucifera])

HSP 1 Score: 169.1 bits (427), Expect = 4.400e-39
Identity = 73/111 (65.77%), Postives = 87/111 (78.38%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFFVGGVEQQV +VLK G  RCI+C S ADLV+Y+ VLK+FFVPVW+WPGK+P ++CN
Sbjct: 1   MFFFFVGGVEQQVSKVLKAGAGRCINCGSVADLVEYEKVLKMFFVPVWRWPGKEPAMYCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 112
            C+L FP+SFS+PP   S   P   DVLRC SCARVVE  + FCPFCG +L
Sbjct: 61  DCSLMFPQSFSLPPPPRSDSPPSLPDVLRCHSCARVVEPEFSFCPFCGSAL 111

[Close]

BLAST of Spo23674.1 vs. NCBI nr
Match: gi|658064267|ref|XP_008368080.1| (PREDICTED: uncharacterized protein LOC103431682 [Malus domestica])

HSP 1 Score: 166.4 bits (420), Expect = 2.800e-38
Identity = 68/110 (61.82%), Postives = 86/110 (78.18%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFF GGV+QQV +VLK+G  RCI+C S ADLV+Y+ VLK+FFVPVW+WPGK+P++HCN
Sbjct: 1   MFFFFAGGVQQQVREVLKSGAGRCIACRSPADLVEYEKVLKLFFVPVWRWPGKEPVMHCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVS 111
            CNLFFPES+S+PP  T+       + LRC+ C RVVE  + FCPFCG +
Sbjct: 61  NCNLFFPESYSLPPPKTTVXSAAVSEALRCRFCDRVVEPEFSFCPFCGAA 110

[Close]

BLAST of Spo23674.1 vs. NCBI nr
Match: gi|224063078|ref|XP_002300985.1| (hypothetical protein POPTR_0002s08370g [Populus trichocarpa])

HSP 1 Score: 165.2 bits (417), Expect = 6.300e-38
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFFVGGVEQQV QVLK+G  RCI C SKADLV+Y+ VLK+FF+PVWKWPGK+P +HCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEI--DVLRCQSCARVVEAGYRFCPFCGVSL 112
            CNL FP+SFS  P  + +  P  +  + LRC  C RVVE+ ++FCPFCG SL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

[Close]

BLAST of Spo23674.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S009_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_015100 PE=4 SV=1)

HSP 1 Score: 245.0 bits (624), Expect = 4.400e-62
Identity = 111/111 (100.00%), Postives = 111/111 (100.00%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN
Sbjct: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 112
           TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL
Sbjct: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 111

[Close]

BLAST of Spo23674.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CCX5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g109540 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 2.800e-48
Identity = 90/111 (81.08%), Postives = 98/111 (88.29%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFF FVGGV+Q+VGQVLKTG+SRCI+CNSKADLVKYDNVLK+FFVPVWKWPGKKPLLHCN
Sbjct: 1   MFFLFVGGVDQKVGQVLKTGVSRCINCNSKADLVKYDNVLKLFFVPVWKWPGKKPLLHCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 112
           TCNLFFPES S    TTS   P + DVLRC SCAR+V+A YRFCPFCGVSL
Sbjct: 61  TCNLFFPESLS---KTTSSSLPSDNDVLRCHSCARLVDADYRFCPFCGVSL 108

[Close]

BLAST of Spo23674.1 vs. UniProtKB/TrEMBL
Match: B9GU34_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s08370g PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 4.400e-38
Identity = 72/113 (63.72%), Postives = 87/113 (76.99%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFFVGGVEQQV QVLK+G  RCI C SKADLV+Y+ VLK+FF+PVWKWPGK+P +HCN
Sbjct: 1   MFFFFVGGVEQQVRQVLKSGAGRCIRCASKADLVEYEKVLKLFFIPVWKWPGKEPAMHCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEI--DVLRCQSCARVVEAGYRFCPFCGVSL 112
            CNL FP+SFS  P  + +  P  +  + LRC  C RVVE+ ++FCPFCG SL
Sbjct: 61  NCNLIFPQSFSHTPPKSDYSLPRSVVTESLRCHFCDRVVESEFKFCPFCGSSL 113

[Close]

BLAST of Spo23674.1 vs. UniProtKB/TrEMBL
Match: W9RWU2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025467 PE=4 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 3.700e-37
Identity = 72/114 (63.16%), Postives = 87/114 (76.32%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFFVGGVEQQV QVLK G  RCISC S+ADLV Y+ VLK+FF+PVWKWPGK P+++C+
Sbjct: 1   MFFFFVGGVEQQVRQVLKYGAGRCISCGSEADLVDYEKVLKLFFLPVWKWPGKDPMMYCD 60

Query: 61  TCNLFFPESFSIPPATTSF--PQPGEIDV-LRCQSCARVVEAGYRFCPFCGVSL 112
            C LFFP S+S+PP T     P P  + V LRC+ C R+VE  +RFCPFCG +L
Sbjct: 61  NCKLFFPPSYSLPPQTAESQPPPPSSVPVSLRCRFCDRLVEPDFRFCPFCGSAL 114

[Close]

BLAST of Spo23674.1 vs. UniProtKB/TrEMBL
Match: B9RJ37_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1030660 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 6.400e-37
Identity = 69/112 (61.61%), Postives = 84/112 (75.00%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFF GGVEQQV +VLK+G+ RC++C S ADLV+Y+ VLK+FF+PV+KWPGK+P ++CN
Sbjct: 1   MFFFFAGGVEQQVSRVLKSGVGRCVNCGSMADLVEYEKVLKLFFIPVYKWPGKEPAMYCN 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEI-DVLRCQSCARVVEAGYRFCPFCGVSL 112
            CNL FP SFS PP  T    P  + D LRC  C RV E  +RFCPFCG SL
Sbjct: 61  NCNLMFPRSFSFPPPRTDSVSPSAVSDGLRCHFCDRVAEPEFRFCPFCGNSL 112

[Close]

BLAST of Spo23674.1 vs. TAIR (Arabidopsis)
Match: AT1G44414.1 (unknown protein)

HSP 1 Score: 150.6 bits (379), Expect = 5.700e-37
Identity = 67/111 (60.36%), Postives = 80/111 (72.07%), Query Frame = 1


		  
Query: 1   MFFFFVGGVEQQVGQVLKTGISRCISCNSKADLVKYDNVLKVFFVPVWKWPGKKPLLHCN 60
           MFFFFVGG+ QQV QVLK+G   CI C S+ADLV+YD V+K+FFVPVW+WPGK PLLHC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  TCNLFFPESFSIPPATTSFPQPGEIDVLRCQSCARVVEAGYRFCPFCGVSL 112
            C+LFFP+S S PP          + +  C+ C RVVE  +RFCPFCG SL
Sbjct: 61  DCDLFFPQSLSPPP----------VSLATCRFCDRVVEPEFRFCPFCGSSL 101

The following BLAST results are available for this feature:

BLAST of Spo23674.1 vs. NCBI nr
BLAST of Spo23674.1 vs. UniProtKB/TrEMBL
BLAST of Spo23674.1 vs. ExPASy Swiss-Prot
BLAST of Spo23674.1 vs. TAIR (Arabidopsis)

BLAST of Spo23674.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902236716\|gb\|KNA24514.1\|	6.3e-62	100.	hypothetical protein SOVF_0151...	[more]
gi\|731333270\|ref\|XP_010677641.1\|	4.0e-48	81.0	PREDICTED: uncharacterized pro...	[more]
gi\|720083174\|ref\|XP_010242814.1\|	4.4e-39	65.7	PREDICTED: uncharacterized pro...	[more]
gi\|658064267\|ref\|XP_008368080.1\|	2.8e-38	61.8	PREDICTED: uncharacterized pro...	[more]
gi\|224063078\|ref\|XP_002300985.1\|	6.3e-38	63.7	hypothetical protein POPTR_000...	[more]

BLAST of Spo23674.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9S009_SPIOL	4.4e-62	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8CCX5_BETVU	2.8e-48	81.0	Uncharacterized protein OS=Bet...	[more]
B9GU34_POPTR	4.4e-38	63.7	Uncharacterized protein OS=Pop...	[more]
W9RWU2_9ROSA	3.7e-37	63.1	Uncharacterized protein OS=Mor...	[more]
B9RJ37_RICCO	6.4e-37	61.6	Putative uncharacterized prote...	[more]

BLAST of Spo23674.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0


Match Name	E-value	Identity	Description

BLAST of Spo23674.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G44414.1	5.7e-37	60.3	unknown protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36718	FAMILY NOT NAMED	coord: 2..111 score: 9.8
None	No IPR available	PANTHER	PTHR36718:SF1	SUBFAMILY NOT NAMED	coord: 2..111 score: 9.8

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006457	protein folding
biological_process	GO:0009408	response to heat
biological_process	GO:0009644	response to high light intensity
biological_process	GO:0042542	response to hydrogen peroxide
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016772	transferase activity, transferring phosphorus-containing groups

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo13184	0.67	Barchart \| Table
Spo11902	0.65	Barchart \| Table