Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTAGCCCATCTTTTGATCAGGTTCTATACTCGATTATGAGTAGTTGTTAACTGTAGGGGTGTGTGAGAGAGCTTCCTAGAGAAAAAAAACAAGAGATGGCGGCAAACAACAAAGAAAAAGATGGAGGAGCAGATGAACCCAGAATAATATGGAGCGAAAATCGAGACAGATTCGAAACAGAAGACAAGAAAGCTTATTTAGAATACCATCTTCAAATCCATGGAAATTCCCAAATCATGAACATTCTTCACACCTTCGTTCCTACTTCCAAACGAGGCCTTGGATTAGCCTCTCACCTCTGCGTTGCCGCCTTCAATCATGCGCAGTCTCACTCTTTGTCCGTCATTCCATCATGCTCCTATGTCTCTGTAAGTATCTAATTTCTGATTCTGGTTTTTTCTAGGGTTTCTTTCAATTTGTTGATTTTGGTACAATTTGTTGATTTGATCGATATACAATTGCTCCTATGTCTCTGTAAGTTTTAATTTCTGGTTCTGGTTTTTTTTCTAGGGTTTCTTTCAATTTGTTGATTTTGGTACAGTTTTGTTGATTTGATCGGTATAGAATTAGGGATTGCGGATTCGGCATCGTCTTTGTTGTTATCATTGTCAATCGTGATATTGAAATTGATGAATTTGTTTTTGATTTCAATTAGTGTCCAGTTTGACTGTAAATGCTGTTCTGCTAATTGAAGTTCTCTTTGTAGTTTATGGTAAAATTGGGAATCATGAACAAAATGTTAGCTAATTTGAGAGTGTTGTTTAGCTGCTGCATTAATAAAACTAACATTTCGTTGTCGAATTGATAAGTTTAAACTGATTAGAAATGCGAAGGATTGCATATCTATCTGCACGGATGCTTAAAAATGGTCTATTTTATGTTCATAAATTTTCATTAACAATCTCTAAATACGGCTCGCTCAAACTCGTGAGCTCAAGCTAGGCTCGAGCTCCAAGCTCGTCCAGCCTACGTTATTGGACTCGAGCTCGAACAGTATAATCGAGCTCGGTTCGGCTCGTAGCTCGATAGGCTCGTTCGAGGTTGATCATCAAGTGTTTAATTATCAAACTAGTTTATGCGAAAAAATGTTTTATAAGAAGTTCATGTATCAAAAAGAACTCGAGCTTGCTTTCGAGCTGAGCAATTGATAGCTCAGGCCTGGCTCGTTAAAATCTCGAGTCGAGCATCCAGTAGTTCGCGAGTAGGCTCAACTCGTTAACATCCGATCTGTTACCATTTGGAAAGTGGTATTTCGCGGGAATTCAAATTTATCAAGAAAAACACCCATGTTTGAGATAAACCTTATTACTATGGACATTATGAGGTTATTACATATTTTTCTTGTCAAATAACACTTGGATATTCTTATTCCTAAATTTTATTACAAACGGACCGAGAATACTTGATTTACCAAAAGATTTAGAGATCATTTTGTATTTCTGCCAACTCCAGAGTTAATTGTAAACTGCTAATAGATTACACTGTATTTTTTATTGTTGCAGGACACATTTCTTCCAAGAAATCCAACATGGAACTCGTTAGTCTACAAAGAAGATCTTAAATCCAGTATCTGAAGCTTCTTTCTGCAACTTCCCTACTCAAATACTAAAATACAAGCTTTGTAATGCTACTGTAACACGCATTGCGTTGTATCAAAAAGGATATTGTAATCGAAAATACATTTGATTTTATAAATATTACTGTTTCCCAGTTTCCTTCATTTTCTTGCAATACTACATACTAATACTCATATATGTTACCATCATCG CTAGCCCATCTTTTGATCAGGTTCTATACTCGATTATGAGTAGTTGTTAACTGTAGGGGTGTGTGAGAGAGCTTCCTAGAGAAAAAAAACAAGAGATGGCGGCAAACAACAAAGAAAAAGATGGAGGAGCAGATGAACCCAGAATAATATGGAGCGAAAATCGAGACAGATTCGAAACAGAAGACAAGAAAGCTTATTTAGAATACCATCTTCAAATCCATGGAAATTCCCAAATCATGAACATTCTTCACACCTTCGTTCCTACTTCCAAACGAGGCCTTGGATTAGCCTCTCACCTCTGCGTTGCCGCCTTCAATCATGCGCAGTCTCACTCTTTGTCCGTCATTCCATCATGCTCCTATGTCTCTGACACATTTCTTCCAAGAAATCCAACATGGAACTCGTTAGTCTACAAAGAAGATCTTAAATCCAGTATCTGAAGCTTCTTTCTGCAACTTCCCTACTCAAATACTAAAATACAAGCTTTGTAATGCTACTGTAACACGCATTGCGTTGTATCAAAAAGGATATTGTAATCGAAAATACATTTGATTTTATAAATATTACTGTTTCCCAGTTTCCTTCATTTTCTTGCAATACTACATACTAATACTCATATATGTTACCATCATCG ATGGCGGCAAACAACAAAGAAAAAGATGGAGGAGCAGATGAACCCAGAATAATATGGAGCGAAAATCGAGACAGATTCGAAACAGAAGACAAGAAAGCTTATTTAGAATACCATCTTCAAATCCATGGAAATTCCCAAATCATGAACATTCTTCACACCTTCGTTCCTACTTCCAAACGAGGCCTTGGATTAGCCTCTCACCTCTGCGTTGCCGCCTTCAATCATGCGCAGTCTCACTCTTTGTCCGTCATTCCATCATGCTCCTATGTCTCTGACACATTTCTTCCAAGAAATCCAACATGGAACTCGTTAGTCTACAAAGAAGATCTTAAATCCAGTATCTGA MAANNKEKDGGADEPRIIWSENRDRFETEDKKAYLEYHLQIHGNSQIMNILHTFVPTSKRGLGLASHLCVAAFNHAQSHSLSVIPSCSYVSDTFLPRNPTWNSLVYKEDLKSSI Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23675.1 vs. NCBI nr
Match: gi|902236714|gb|KNA24512.1| (hypothetical protein SOVF_015080 [Spinacia oleracea]) HSP 1 Score: 236.5 bits (602), Expect = 2.300e-59 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
BLAST of Spo23675.1 vs. NCBI nr
Match: gi|731333266|ref|XP_010677639.1| (PREDICTED: acetyltransferase At1g77540 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 175.6 bits (444), Expect = 4.800e-41 Identity = 85/112 (75.89%), Postives = 98/112 (87.50%), Query Frame = 1
BLAST of Spo23675.1 vs. NCBI nr
Match: gi|225459577|ref|XP_002285862.1| (PREDICTED: acetyltransferase At1g77540 [Vitis vinifera]) HSP 1 Score: 164.1 bits (414), Expect = 1.500e-37 Identity = 79/112 (70.54%), Postives = 97/112 (86.61%), Query Frame = 1
BLAST of Spo23675.1 vs. NCBI nr
Match: gi|698512783|ref|XP_009801391.1| (PREDICTED: acetyltransferase At1g77540 [Nicotiana sylvestris]) HSP 1 Score: 161.8 bits (408), Expect = 7.200e-37 Identity = 77/105 (73.33%), Postives = 91/105 (86.67%), Query Frame = 1
BLAST of Spo23675.1 vs. NCBI nr
Match: gi|565380455|ref|XP_006356614.1| (PREDICTED: acetyltransferase At1g77540 [Solanum tuberosum]) HSP 1 Score: 160.6 bits (405), Expect = 1.600e-36 Identity = 75/103 (72.82%), Postives = 92/103 (89.32%), Query Frame = 1
BLAST of Spo23675.1 vs. UniProtKB/TrEMBL
Match: A0A0K9S045_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_015080 PE=4 SV=1) HSP 1 Score: 236.5 bits (602), Expect = 1.600e-59 Identity = 114/114 (100.00%), Postives = 114/114 (100.00%), Query Frame = 1
BLAST of Spo23675.1 vs. UniProtKB/TrEMBL
Match: A0A0J8CHV4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_5g109520 PE=4 SV=1) HSP 1 Score: 175.6 bits (444), Expect = 3.400e-41 Identity = 85/112 (75.89%), Postives = 98/112 (87.50%), Query Frame = 1
BLAST of Spo23675.1 vs. UniProtKB/TrEMBL
Match: A0A0V0H335_SOLCH (Putative acetyltransferase-like OS=Solanum chacoense PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 1.100e-36 Identity = 75/103 (72.82%), Postives = 92/103 (89.32%), Query Frame = 1
BLAST of Spo23675.1 vs. UniProtKB/TrEMBL
Match: K4CM04_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1) HSP 1 Score: 160.2 bits (404), Expect = 1.500e-36 Identity = 75/102 (73.53%), Postives = 91/102 (89.22%), Query Frame = 1
BLAST of Spo23675.1 vs. UniProtKB/TrEMBL
Match: A0A0A0KY68_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G364010 PE=4 SV=1) HSP 1 Score: 159.8 bits (403), Expect = 1.900e-36 Identity = 74/114 (64.91%), Postives = 95/114 (83.33%), Query Frame = 1
BLAST of Spo23675.1 vs. ExPASy Swiss-Prot
Match: Y1754_ARATH (Acetyltransferase At1g77540 OS=Arabidopsis thaliana GN=At1g77540 PE=1 SV=2) HSP 1 Score: 142.9 bits (359), Expect = 2.200e-33 Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1
BLAST of Spo23675.1 vs. TAIR (Arabidopsis)
Match: AT1G77540.1 (Acyl-CoA N-acyltransferases (NAT) superfamily protein) HSP 1 Score: 142.9 bits (359), Expect = 1.200e-34 Identity = 65/112 (58.04%), Postives = 87/112 (77.68%), Query Frame = 1
BLAST of Spo23675.1 vs. TAIR (Arabidopsis)
Match: AT1G21770.1 (Acyl-CoA N-acyltransferases (NAT) superfamily protein) HSP 1 Score: 133.3 bits (334), Expect = 9.700e-32 Identity = 63/106 (59.43%), Postives = 83/106 (78.30%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23675.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo23675.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5 Position : 0 Zoom : x 1
BLAST of Spo23675.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 1 Position : 0 Zoom : x 1
BLAST of Spo23675.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 2 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29 Position : 0 Zoom : x 1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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