Overview
Sequences
The following sequences are available for this feature:
Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CTTTTCATGGTATACAACTTTTCTTGTCGGTGGTTTAAATCAGTTTGGTTAGCTCACTCCACTAGAGAGATAAACTTCTCCTTTTTTGTTTTTTTTTCTTCTCATTTTCTCACACACTAAAACAAATTCTCTCTCCACTTTTTTGTTTTACCGGATAATTCGGAATTCCCTCTTCATGTTCGGGCGTAAAGGTTGAAGCTTTCAAGTTTTATCTATCTCCCTCCTTAATTAATTAAGGTATTTTATTTATTTATTACCACCCTCTTAATTTTACAGTATTCTAATTTGATTTTTGTTGAAACTCCTGCTTTAATTGTTCTGTTCCTTGTTGATCTACCCTTCTCATTTAATTTTCTGGGTTTTTGGTAGTTGGCAAGATAAACTCTCCCCCCTCTCTCTTTCTATCTCTCTCTCCTCATTTCTTGTAAAATCCTCCTCCAAATTCTAATTCTGATGTTAATTTCTACCAATAAATTTATGTAAAGGTAAAAATTTAACCTCACATTTTGAAGTTTTCTCTGTTTTTTAAGTTTATGATCTCATATTTTTCAATTTTAGAGCTTGTAATTATTTTGGGGTTTTTGTATGATTAAAAACTTCGCAAATTAGTTTCATTTTATTGCATGATTAAGATTGCACATCTGTGAAAGATTAAAACTTTGGCAGTATAGGAATAATTTGAAGGCAGTTTAGCTCATCCCATTTCTTAAAGATTAAAACTTTGGTAGTATTGGAATAATTTGAAGGCATTTTAGCTCATACCCATTTGTTAAAGATTAAAACTTTGGTAGTATTGGTATAATTTGAAGCCATTTTAGCTCATACCCATTTGTTAAAGATTAAAACTTTAATAGTATTGGAATAATTTGAAGGCATTTTAGCTCATACCCATTTGAGAAAGATCAAAACTTTGGTGCTAATTTTTTAGACTAAATATGCAGTTAAGTGTGATTTTAGCTCACATTTCTTAATTTTCTTTGTGAAATGGTGTATGTTTAATTTATCCATAGATCTGCTCTTTCCCATTTTTAGCTTAGTTAGTAAAAGATTCCATCTTTTTTTAATTTACTGTAATTTTTCATACAATTATCCTTTACCCATTTGAAAACACCCAATTTTTCATACAATTATCCTTCTTTGAATGTGAAGGACTAATTTGTGGGGGTTTGTTTTGAAGGGGTGAGTAAGATGGAAGAAGGAAGTGAATTTAGACAATGGGATGAGTTAATTCCAGATGCATTAGGGTTAATATTCAAGAAGCTCCCTTTAGAGGACATATTGACAGTGATTCCTAGGGTATGCAAGGCATGGGGGAAAGCTGTTCAAGGGCCTTATTGTTGGTTAGAGATTGACATTGATGAGTGGAGTGTACATTGCGAGTCCGAGAAGCTCGAACGGATGCTCCGATTGCTTATTACTCGAAGCTCCGGTTCGCTTCGTAAGCTCCATGTTTCTTGTGTCAATAATGATCAGAGTTTTGCTTTCATTGCTGAAAAGTAAGCATCCTTGATTCTGTTTTTCATTGTTGGATTAAACCCTTGTTTTGGCTAGTTTTGTGTGATTGTTGAATGTGTGTGTAGTTGTGCTTTGTTTTGGTATGAAATTAAGCAAAAGGGTGGAAGGTGAAATTGAACATCAATGAATTAATGTGGAGTTAAGTGTGATTTGGGGACCAATGAATTAATGTTTTTTTTAATGATCCGAATGAACCATAAATGCAATATAAATTACAAATGGGAAGGGGACTTGAACCTGAGACTACAGTAACACACAGTAACACTTAACTATTAGGCCACGACCTCATTAGTACCAATGAATTAATGTCATAGTTCTGGAATGGTTTGTTATGCAAAGAAAAGAAAGAATATTCGGGACCATGCATTAGAGTCATGGATTTGGTGTTTTGTGGATCTGTGAACATATTCATTTTGGTGGAATGTCTCACATCCACCCAATGCCAAACCAATGTCTTCACAATCACGTTTTCGAGATGAGGCCGGTGGATTCCTTTGGCATTGTTAGATTTGTTGGCTTGCTTAACCAAACAAATCCTCAATGTATCTACTCCAACCAAACAAAACTAACAATGTTACTATCTTCATGATTAGTTTTTTTCCTCTTCAATGCCAATTCTCTGAAGTTAAAGGCTTGAAGTTTTACATAACAAAAGAATGTAGGAGAAACGGCCAATTCCCCGGTTTCTATTCCTTGTGTAGAAGAGGACATAAACACTTAATCTGAACTTCCATTGCAGCAATATTACCTGATCTATTAATTTATTATCTAATAAGTTACTAGTAACCAATGCGGTCTTGGCCTAATGGTTAAGACTGGTAGCTTGCGCGTGATAGGTCTCAGTTTCGAATCCCCCTCCCCCATTTGTAATTTGTATTGCCCTTATGGCTCATTCGCACAAAAAAAAAAGTCAGTACTCCGTAATTGTTTTGTTAATTTATGATTATGTGACAATGTTTATTCAAATCCATGATGTTGTGGTGTAAATGTGTTATTTCTTTTTCATTTTGCTAGTGCTGGATCCCTTCAGAATCTTGTAATGCGGAGAAGTGAAATCAGTGACTCAATCGTAGAGCAATTAGCCGGAAAGTTCACTAGACTCACTTCATTAGACCTGAGCTACTGTTGTCAGATTAGCACCCATGCTTTAGAAGCCATTGGCAAAAACTGTAAACTCTTATCTTCCTTAAGCTGGAACATGCACCCTTTAGGCTCGGCTTTCAAACCATCACACGCCGATGAAGCTCACGCTATTGCCAAAACAATGCCTAAACTTAAACAACTTGAGTTAGCTTACCTCCGAATCAACGTAGAGTGTGTCCTTAACATCCTTTCGGGGTGCCCTAACCTTGAGTTTTTGGACTTAAGAGGGTGTTGGGATGTTCATTTAGACAAAAATGCCCTTGTGAAACGGCACCCTAAGTTGGAGATTCTCGGGCCTCAAGTAGTGATGGGTGTGTTCGAAAGAAGAGCGTATTTCGATGATTATTACTCGGATTCGGACTTTTCGGATTACGATTATATGGATTATAGTGATGATGAAAGCTTTGATGGAATGTGGGATGATGAAGATATAGAGCTCAGGATTTATGAAGGCCCTGATAACATGTATGAATTCGGTTGGCCTCCATCGCCTTAGTAAGTAGTTAATAGTTGGTTACTTCATAGCTATGTTATGAACTTTGTGTTATTTCACTCCTTGTGAAATTTGTGAAGAGTCTATTTTTCTACACCTTAAGTCTTTATGTGGATCTATATACCCTTTTAGTATGAATGAAAGTATTGCAGTTTGTATATTTTTATCAGATTTTCGATCTCAGATGTTAGAATATTTATCTAATTATTTTATATAAGTATAAGATTTAAGTTTTGAT CTTTTCATGGTATACAACTTTTCTTGTCGGTGGTTTAAATCAGTTTGGTTAGCTCACTCCACTAGAGAGATAAACTTCTCCTTTTTTGTTTTTTTTTCTTCTCATTTTCTCACACACTAAAACAAATTCTCTCTCCACTTTTTTGTTTTACCGGATAATTCGGAATTCCCTCTTCATGTTCGGGCGTAAAGGTTGAAGCTTTCAAGTTTTATCTATCTCCCTCCTTAATTAATTAAGGGGTGAGTAAGATGGAAGAAGGAAGTGAATTTAGACAATGGGATGAGTTAATTCCAGATGCATTAGGGTTAATATTCAAGAAGCTCCCTTTAGAGGACATATTGACAGTGATTCCTAGGGTATGCAAGGCATGGGGGAAAGCTGTTCAAGGGCCTTATTGTTGGTTAGAGATTGACATTGATGAGTGGAGTGTACATTGCGAGTCCGAGAAGCTCGAACGGATGCTCCGATTGCTTATTACTCGAAGCTCCGGTTCGCTTCGTAAGCTCCATGTTTCTTGTGTCAATAATGATCAGAGTTTTGCTTTCATTGCTGAAAATGCTGGATCCCTTCAGAATCTTGTAATGCGGAGAAGTGAAATCAGTGACTCAATCGTAGAGCAATTAGCCGGAAAGTTCACTAGACTCACTTCATTAGACCTGAGCTACTGTTGTCAGATTAGCACCCATGCTTTAGAAGCCATTGGCAAAAACTGTAAACTCTTATCTTCCTTAAGCTGGAACATGCACCCTTTAGGCTCGGCTTTCAAACCATCACACGCCGATGAAGCTCACGCTATTGCCAAAACAATGCCTAAACTTAAACAACTTGAGTTAGCTTACCTCCGAATCAACGTAGAGTGTGTCCTTAACATCCTTTCGGGGTGCCCTAACCTTGAGTTTTTGGACTTAAGAGGGTGTTGGGATGTTCATTTAGACAAAAATGCCCTTGTGAAACGGCACCCTAAGTTGGAGATTCTCGGGCCTCAAGTAGTGATGGGTGTGTTCGAAAGAAGAGCGTATTTCGATGATTATTACTCGGATTCGGACTTTTCGGATTACGATTATATGGATTATAGTGATGATGAAAGCTTTGATGGAATGTGGGATGATGAAGATATAGAGCTCAGGATTTATGAAGGCCCTGATAACATGTATGAATTCGGTTGGCCTCCATCGCCTTAGTAAGTAGTTAATAGTTGGTTACTTCATAGCTATGTTATGAACTTTGTGTTATTTCACTCCTTGTGAAATTTGTGAAGAGTCTATTTTTCTACACCTTAAGTCTTTATGTGGATCTATATACCCTTTTAGTATGAATGAAAGTATTGCAGTTTGTATATTTTTATCAGATTTTCGATCTCAGATGTTAGAATATTTATCTAATTATTTTATATAAGTATAAGATTTAAGTTTTGAT ATGGAAGAAGGAAGTGAATTTAGACAATGGGATGAGTTAATTCCAGATGCATTAGGGTTAATATTCAAGAAGCTCCCTTTAGAGGACATATTGACAGTGATTCCTAGGGTATGCAAGGCATGGGGGAAAGCTGTTCAAGGGCCTTATTGTTGGTTAGAGATTGACATTGATGAGTGGAGTGTACATTGCGAGTCCGAGAAGCTCGAACGGATGCTCCGATTGCTTATTACTCGAAGCTCCGGTTCGCTTCGTAAGCTCCATGTTTCTTGTGTCAATAATGATCAGAGTTTTGCTTTCATTGCTGAAAATGCTGGATCCCTTCAGAATCTTGTAATGCGGAGAAGTGAAATCAGTGACTCAATCGTAGAGCAATTAGCCGGAAAGTTCACTAGACTCACTTCATTAGACCTGAGCTACTGTTGTCAGATTAGCACCCATGCTTTAGAAGCCATTGGCAAAAACTGTAAACTCTTATCTTCCTTAAGCTGGAACATGCACCCTTTAGGCTCGGCTTTCAAACCATCACACGCCGATGAAGCTCACGCTATTGCCAAAACAATGCCTAAACTTAAACAACTTGAGTTAGCTTACCTCCGAATCAACGTAGAGTGTGTCCTTAACATCCTTTCGGGGTGCCCTAACCTTGAGTTTTTGGACTTAAGAGGGTGTTGGGATGTTCATTTAGACAAAAATGCCCTTGTGAAACGGCACCCTAAGTTGGAGATTCTCGGGCCTCAAGTAGTGATGGGTGTGTTCGAAAGAAGAGCGTATTTCGATGATTATTACTCGGATTCGGACTTTTCGGATTACGATTATATGGATTATAGTGATGATGAAAGCTTTGATGGAATGTGGGATGATGAAGATATAGAGCTCAGGATTTATGAAGGCCCTGATAACATGTATGAATTCGGTTGGCCTCCATCGCCTTAG MEEGSEFRQWDELIPDALGLIFKKLPLEDILTVIPRVCKAWGKAVQGPYCWLEIDIDEWSVHCESEKLERMLRLLITRSSGSLRKLHVSCVNNDQSFAFIAENAGSLQNLVMRRSEISDSIVEQLAGKFTRLTSLDLSYCCQISTHALEAIGKNCKLLSSLSWNMHPLGSAFKPSHADEAHAIAKTMPKLKQLELAYLRINVECVLNILSGCPNLEFLDLRGCWDVHLDKNALVKRHPKLEILGPQVVMGVFERRAYFDDYYSDSDFSDYDYMDYSDDESFDGMWDDEDIELRIYEGPDNMYEFGWPPSP Relationships
The following mRNA feature(s) are a part of this gene:
Homology
BLAST of Spo23835.1 vs. NCBI nr
Match: gi|902206717|gb|KNA15549.1| (hypothetical protein SOVF_097350 [Spinacia oleracea]) HSP 1 Score: 642.1 bits (1655), Expect = 4.900e-181 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
BLAST of Spo23835.1 vs. NCBI nr
Match: gi|731312725|ref|XP_010676067.1| (PREDICTED: F-box protein FBW2-like [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 592.8 bits (1527), Expect = 3.400e-166 Identity = 280/310 (90.32%), Postives = 299/310 (96.45%), Query Frame = 1
BLAST of Spo23835.1 vs. NCBI nr
Match: gi|1009135927|ref|XP_015885256.1| (PREDICTED: F-box protein FBW2 [Ziziphus jujuba]) HSP 1 Score: 384.4 bits (986), Expect = 1.900e-103 Identity = 202/327 (61.77%), Postives = 244/327 (74.62%), Query Frame = 1
BLAST of Spo23835.1 vs. NCBI nr
Match: gi|703106938|ref|XP_010098624.1| (F-box protein FBW2 [Morus notabilis]) HSP 1 Score: 375.9 bits (964), Expect = 6.600e-101 Identity = 200/328 (60.98%), Postives = 237/328 (72.26%), Query Frame = 1
BLAST of Spo23835.1 vs. NCBI nr
Match: gi|743802151|ref|XP_011016704.1| (PREDICTED: F-box protein FBW2 [Populus euphratica]) HSP 1 Score: 360.9 bits (925), Expect = 2.200e-96 Identity = 183/322 (56.83%), Postives = 236/322 (73.29%), Query Frame = 1
BLAST of Spo23835.1 vs. UniProtKB/TrEMBL
Match: A0A0K9R993_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_097350 PE=4 SV=1) HSP 1 Score: 642.1 bits (1655), Expect = 3.400e-181 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
BLAST of Spo23835.1 vs. UniProtKB/TrEMBL
Match: A0A0J8FVZ4_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_1g008680 PE=4 SV=1) HSP 1 Score: 592.8 bits (1527), Expect = 2.400e-166 Identity = 280/310 (90.32%), Postives = 299/310 (96.45%), Query Frame = 1
BLAST of Spo23835.1 vs. UniProtKB/TrEMBL
Match: W9R7X2_9ROSA (F-box protein FBW2 OS=Morus notabilis GN=L484_012736 PE=4 SV=1) HSP 1 Score: 375.9 bits (964), Expect = 4.600e-101 Identity = 200/328 (60.98%), Postives = 237/328 (72.26%), Query Frame = 1
BLAST of Spo23835.1 vs. UniProtKB/TrEMBL
Match: B9GUY3_POPTR (N7 family protein OS=Populus trichocarpa GN=POPTR_0002s09930g PE=4 SV=1) HSP 1 Score: 358.6 bits (919), Expect = 7.600e-96 Identity = 182/322 (56.52%), Postives = 235/322 (72.98%), Query Frame = 1
BLAST of Spo23835.1 vs. UniProtKB/TrEMBL
Match: A0A061FGV4_THECC (F-box with wd-40 2 isoform 3 OS=Theobroma cacao GN=TCM_034872 PE=4 SV=1) HSP 1 Score: 357.1 bits (915), Expect = 2.200e-95 Identity = 188/322 (58.39%), Postives = 236/322 (73.29%), Query Frame = 1
BLAST of Spo23835.1 vs. ExPASy Swiss-Prot
Match: FBW2_ARATH (F-box protein FBW2 OS=Arabidopsis thaliana GN=FBW2 PE=1 SV=1) HSP 1 Score: 303.5 bits (776), Expect = 2.600e-81 Identity = 165/318 (51.89%), Postives = 215/318 (67.61%), Query Frame = 1
BLAST of Spo23835.1 vs. ExPASy Swiss-Prot
Match: SKIP1_ARATH (F-box protein SKIP1 OS=Arabidopsis thaliana GN=SKIP1 PE=1 SV=1) HSP 1 Score: 120.6 bits (301), Expect = 3.100e-26 Identity = 86/265 (32.45%), Postives = 135/265 (50.94%), Query Frame = 1
BLAST of Spo23835.1 vs. ExPASy Swiss-Prot
Match: SKI19_ARATH (F-box protein SKIP19 OS=Arabidopsis thaliana GN=SKIP19 PE=1 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 1.100e-23 Identity = 93/294 (31.63%), Postives = 144/294 (48.98%), Query Frame = 1
BLAST of Spo23835.1 vs. ExPASy Swiss-Prot
Match: FBL23_ARATH (Putative F-box/LRR-repeat protein 23 OS=Arabidopsis thaliana GN=FBL23 PE=3 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 4.200e-23 Identity = 72/225 (32.00%), Postives = 115/225 (51.11%), Query Frame = 1
BLAST of Spo23835.1 vs. ExPASy Swiss-Prot
Match: FBL19_ARATH (Putative F-box/LRR-repeat protein 19 OS=Arabidopsis thaliana GN=FBL19 PE=4 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 3.800e-16 Identity = 67/243 (27.57%), Postives = 114/243 (46.91%), Query Frame = 1
BLAST of Spo23835.1 vs. TAIR (Arabidopsis)
Match: AT4G08980.1 (F-BOX WITH WD-40 2) HSP 1 Score: 303.5 bits (776), Expect = 1.500e-82 Identity = 165/318 (51.89%), Postives = 215/318 (67.61%), Query Frame = 1
BLAST of Spo23835.1 vs. TAIR (Arabidopsis)
Match: AT5G57900.1 (SKP1 interacting partner 1) HSP 1 Score: 120.6 bits (301), Expect = 1.800e-27 Identity = 86/265 (32.45%), Postives = 135/265 (50.94%), Query Frame = 1
BLAST of Spo23835.1 vs. TAIR (Arabidopsis)
Match: AT4G05460.1 (RNI-like superfamily protein) HSP 1 Score: 112.1 bits (279), Expect = 6.300e-25 Identity = 93/294 (31.63%), Postives = 144/294 (48.98%), Query Frame = 1
BLAST of Spo23835.1 vs. TAIR (Arabidopsis)
Match: AT4G30640.1 (RNI-like superfamily protein) HSP 1 Score: 87.0 bits (214), Expect = 2.200e-17 Identity = 67/243 (27.57%), Postives = 114/243 (46.91%), Query Frame = 1
BLAST of Spo23835.1 vs. TAIR (Arabidopsis)
Match: AT4G05470.1 (RNI-like superfamily protein) HSP 1 Score: 82.0 bits (201), Expect = 7.000e-16 Identity = 69/242 (28.51%), Postives = 110/242 (45.45%), Query Frame = 1
The following BLAST results are available for this feature:
BLAST of Spo23835.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr) Total hits: 5
BLAST of Spo23835.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL) Total hits: 5
BLAST of Spo23835.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt) Total hits: 5
BLAST of Spo23835.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR) Total hits: 5
InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
RNA-Seq Expression
Co-expression
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