Spo23893 (gene)

Overview
NameSpo23893
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionB-box zinc finger family protein
LocationSpoScf_25757 : 325 .. 789 (-)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTGAAGAGGAAATGTGAGTTATGTAGCAATATTGCTACAATATTTTGTGAATCGGATCAAGCAAATTTATGTTATGAATGTGATTCCAAAGTTCATGGTGCTAATTTTCTTGTTTCAAAACACTCTAGGACTCTTCTTTGTCATATTTGTCAATCTCCTACACTATGGTCCGGGTCCGGCCCGAAGTTCGGACCAACTCTCTCCGTTTGCCCGGGTTGCCTTATTGAAAGGCAGCGTAGAGATGTTGGTAACAATGGTAATGGTGGCCGTGAAGTGGCCGATGAAGATTACGATGATGATGATAATGATGATGACGATGACGATGACAATGACGACGATGGAGACAATGGTTATGAAGATGATGAGAGTGATGATGGTAATGATGATGTTGATGAGGATGAAGATGATGAAGAAAATCAAGTTGTTCCATGGTCATATTCAGTGTCACATCCAGGGTAA

mRNA sequence

ATGAGGGTGAAGAGGAAATGTGAGTTATGTAGCAATATTGCTACAATATTTTGTGAATCGGATCAAGCAAATTTATGTTATGAATGTGATTCCAAAGTTCATGGTGCTAATTTTCTTGTTTCAAAACACTCTAGGACTCTTCTTTGTCATATTTGTCAATCTCCTACACTATGGTCCGGGTCCGGCCCGAAGTTCGGACCAACTCTCTCCGTTTGCCCGGGTTGCCTTATTGAAAGGCAGCGTAGAGATGTTGGTAACAATGGTAATGGTGGCCGTGAAGTGGCCGATGAAGATTACGATGATGATGATAATGATGATGACGATGACGATGACAATGACGACGATGGAGACAATGGTTATGAAGATGATGAGAGTGATGATGGTAATGATGATGTTGATGAGGATGAAGATGATGAAGAAAATCAAGTTGTTCCATGGTCATATTCAGTGTCACATCCAGGGTAA

Coding sequence (CDS)

ATGAGGGTGAAGAGGAAATGTGAGTTATGTAGCAATATTGCTACAATATTTTGTGAATCGGATCAAGCAAATTTATGTTATGAATGTGATTCCAAAGTTCATGGTGCTAATTTTCTTGTTTCAAAACACTCTAGGACTCTTCTTTGTCATATTTGTCAATCTCCTACACTATGGTCCGGGTCCGGCCCGAAGTTCGGACCAACTCTCTCCGTTTGCCCGGGTTGCCTTATTGAAAGGCAGCGTAGAGATGTTGGTAACAATGGTAATGGTGGCCGTGAAGTGGCCGATGAAGATTACGATGATGATGATAATGATGATGACGATGACGATGACAATGACGACGATGGAGACAATGGTTATGAAGATGATGAGAGTGATGATGGTAATGATGATGTTGATGAGGATGAAGATGATGAAGAAAATCAAGTTGTTCCATGGTCATATTCAGTGTCACATCCAGGGTAA

Protein sequence

MRVKRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKFGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSHPG
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23893.1Spo23893.1mRNA


Homology
[Close]
BLAST of Spo23893.1 vs. NCBI nr
Match: gi|731377491|ref|XP_010667890.1| (PREDICTED: B-box zinc finger protein 32-like [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 196.4 bits (498), Expect = 3.600e-47
Identity = 111/156 (71.15%), Postives = 128/156 (82.05%), Query Frame = 1 

		  

Query: 1   MRVKRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSG 60
           M +KRKCELCSN+A I+CESDQANLCYECDSK+HGANFLV+KHSRTLLCH+CQSPTLW+G
Sbjct: 1   MVMKRKCELCSNLAKIYCESDQANLCYECDSKIHGANFLVAKHSRTLLCHVCQSPTLWTG 60

Query: 61  SGPKFGPTLSVCPGCLIER----QRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDG 120
           SGPKFGPTLSVCP CL       + RDV N  N   E  D+D DD    ++DDD+++DDG
Sbjct: 61  SGPKFGPTLSVCPACLSSNRAIARHRDVKNGDNHEDEDRDDDKDDGGGSNEDDDEDNDDG 120

Query: 121 DNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSH 153
           DNG E+D SD+G+DD DE EDDEENQVVPWSYSVSH
Sbjct: 121 DNGSEEDGSDNGDDD-DEHEDDEENQVVPWSYSVSH 155
[Close]
BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1000954520|ref|XP_015578162.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4 isoform X1 [Ricinus communis])

HSP 1 Score: 140.2 bits (352), Expect = 3.000e-30
Identity = 86/150 (57.33%), Postives = 110/150 (73.33%), Query Frame = 1 

		  

Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESDQA+LC++CD++VH ANFLV+KHSRTLLCH+CQS T W+ SGP+
Sbjct: 2   KKCELCNSLAKMYCESDQASLCWDCDARVHAANFLVAKHSRTLLCHLCQSFTPWTASGPR 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNG-YEDD 124
             PT+S+C  C+ +   R    N +      D ++DDDDNDDDDDDD D DGD G  EDD
Sbjct: 62  LRPTVSICDNCVKDSTCRPERRNKD------DRNHDDDDNDDDDDDD-DGDGDTGDSEDD 121

Query: 125 ESDDGNDDVDEDEDDEENQVVPWSYSVSHP 154
           ES DG      DEDDEENQVVPWS + + P
Sbjct: 122 ESGDGG-----DEDDEENQVVPWSSTSAPP 139
[Close]
BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1000954522|ref|XP_015578163.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4 isoform X2 [Ricinus communis])

HSP 1 Score: 140.2 bits (352), Expect = 3.000e-30
Identity = 86/150 (57.33%), Postives = 110/150 (73.33%), Query Frame = 1 

		  

Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESDQA+LC++CD++VH ANFLV+KHSRTLLCH+CQS T W+ SGP+
Sbjct: 2   KKCELCNSLAKMYCESDQASLCWDCDARVHAANFLVAKHSRTLLCHLCQSFTPWTASGPR 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNG-YEDD 124
             PT+S+C  C+ +   R    N +      D ++DDDDNDDDDDDD D DGD G  EDD
Sbjct: 62  LRPTVSICDNCVKDSTCRPERRNKD------DRNHDDDDNDDDDDDD-DGDGDTGDSEDD 121

Query: 125 ESDDGNDDVDEDEDDEENQVVPWSYSVSHP 154
           ES DG      DEDDEENQVVPWS + + P
Sbjct: 122 ESGDGG-----DEDDEENQVVPWSSTSAPP 139
[Close]
BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1009109030|ref|XP_015887897.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4-like isoform X2 [Ziziphus jujuba])

HSP 1 Score: 139.0 bits (349), Expect = 6.800e-30
Identity = 86/156 (55.13%), Postives = 112/156 (71.79%), Query Frame = 1 

		  

Query: 6   KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKF 65
           KCELC ++A ++CESDQA+LC++CD++VHGANFLV+KHSRTLLCH+CQS T W+G+G K 
Sbjct: 2   KCELCDSVAKMYCESDQASLCWDCDAQVHGANFLVAKHSRTLLCHVCQSLTPWNGTGRKL 61

Query: 66  GPTLSVCPGCLIERQRRDVGN---NGNGGREVADEDYDDDDNDD--DDDDDNDDDGDNGY 125
           GPT+SVC  C+   ++ +  N   N   G E  DED D+D  +D  +DDDD DDD  +G 
Sbjct: 62  GPTVSVCENCVNRLKQNEAINQARNQRNGEEDDDEDEDEDHVEDHLEDDDDEDDDNSDGD 121

Query: 126 EDDESD---DGNDDVDEDEDDEENQVVPWSYSVSHP 154
           +DD+ D   DG+ D D DE DEENQVVPWS +   P
Sbjct: 122 DDDDGDDDGDGDGDGDGDEGDEENQVVPWSSTPPPP 157
[Close]
BLAST of Spo23893.1 vs. NCBI nr
Match: gi|1009109028|ref|XP_015887891.1| (PREDICTED: zinc finger protein CONSTANS-LIKE 4-like isoform X1 [Ziziphus jujuba])

HSP 1 Score: 139.0 bits (349), Expect = 6.800e-30
Identity = 86/156 (55.13%), Postives = 112/156 (71.79%), Query Frame = 1 

		  

Query: 6   KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKF 65
           KCELC ++A ++CESDQA+LC++CD++VHGANFLV+KHSRTLLCH+CQS T W+G+G K 
Sbjct: 2   KCELCDSVAKMYCESDQASLCWDCDAQVHGANFLVAKHSRTLLCHVCQSLTPWNGTGRKL 61

Query: 66  GPTLSVCPGCLIERQRRDVGN---NGNGGREVADEDYDDDDNDD--DDDDDNDDDGDNGY 125
           GPT+SVC  C+   ++ +  N   N   G E  DED D+D  +D  +DDDD DDD  +G 
Sbjct: 62  GPTVSVCENCVNRLKQNEAINQARNQRNGEEDDDEDEDEDHVEDHLEDDDDEDDDNSDGD 121

Query: 126 EDDESD---DGNDDVDEDEDDEENQVVPWSYSVSHP 154
           +DD+ D   DG+ D D DE DEENQVVPWS +   P
Sbjct: 122 DDDDGDDDGDGDGDGDGDEGDEENQVVPWSSTPPPP 157
[Close]
BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: A0A0J8B260_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_012890 PE=4 SV=1)

HSP 1 Score: 196.4 bits (498), Expect = 2.500e-47
Identity = 111/156 (71.15%), Postives = 128/156 (82.05%), Query Frame = 1 

		  

Query: 1   MRVKRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSG 60
           M +KRKCELCSN+A I+CESDQANLCYECDSK+HGANFLV+KHSRTLLCH+CQSPTLW+G
Sbjct: 1   MVMKRKCELCSNLAKIYCESDQANLCYECDSKIHGANFLVAKHSRTLLCHVCQSPTLWTG 60

Query: 61  SGPKFGPTLSVCPGCLIER----QRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDG 120
           SGPKFGPTLSVCP CL       + RDV N  N   E  D+D DD    ++DDD+++DDG
Sbjct: 61  SGPKFGPTLSVCPACLSSNRAIARHRDVKNGDNHEDEDRDDDKDDGGGSNEDDDEDNDDG 120

Query: 121 DNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSH 153
           DNG E+D SD+G+DD DE EDDEENQVVPWSYSVSH
Sbjct: 121 DNGSEEDGSDNGDDD-DEHEDDEENQVVPWSYSVSH 155
[Close]
BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: A0A061GF15_THECC (B-box type zinc finger family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_030024 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.100e-30
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1 

		  

Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESD A LC++CDS+VHGANFLV+KH RTLLCH+CQSPT W+GSGPK
Sbjct: 2   KKCELCNSLAKMYCESDLAILCWDCDSRVHGANFLVAKHLRTLLCHLCQSPTPWNGSGPK 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+S C  C+     R+  NN     E   ED DDDD+ D +DD  DDDGDNG     
Sbjct: 62  LGPTVSACDNCVNRNACREESNNEETHDE---EDEDDDDDLDGEDDSEDDDGDNG----- 121

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                       DDEENQVVPWS
Sbjct: 122 ------------DDEENQVVPWS 124
[Close]
BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: A0A061GMY3_THECC (B-box type zinc finger family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_030024 PE=4 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 6.100e-30
Identity = 80/143 (55.94%), Postives = 97/143 (67.83%), Query Frame = 1 

		  

Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC+++A ++CESD A LC++CDS+VHGANFLV+KH RTLLCH+CQSPT W+GSGPK
Sbjct: 47  KKCELCNSLAKMYCESDLAILCWDCDSRVHGANFLVAKHLRTLLCHLCQSPTPWNGSGPK 106

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+S C  C+     R+  NN     E   ED DDDD+ D +DD  DDDGDNG     
Sbjct: 107 LGPTVSACDNCVNRNACREESNNEETHDE---EDEDDDDDLDGEDDSEDDDGDNG----- 166

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                       DDEENQVVPWS
Sbjct: 167 ------------DDEENQVVPWS 169
[Close]
BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: V4UE20_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016798mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-29
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1 

		  

Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC + A +FCESDQA+LC++CD+KVHGANFLV+KHSRTLLCH+CQS T W+GSGPK
Sbjct: 2   KKCELCGSPAKMFCESDQASLCWDCDTKVHGANFLVAKHSRTLLCHVCQSLTPWNGSGPK 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+SVC  C+ +          N G    D+DYDD + ++DDDDD  D          
Sbjct: 62  LGPTISVCNVCVGDGSGSTSREETNRGETYTDDDYDDANEEEDDDDDGGD---------- 121

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                   ++++DDEENQVVPWS
Sbjct: 122 --------EDEDDDEENQVVPWS 126
[Close]
BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Match: V4W880_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016798mg PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 1.000e-29
Identity = 76/143 (53.15%), Postives = 97/143 (67.83%), Query Frame = 1 

		  

Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KCELC + A +FCESDQA+LC++CD+KVHGANFLV+KHSRTLLCH+CQS T W+GSGPK
Sbjct: 2   KKCELCGSPAKMFCESDQASLCWDCDTKVHGANFLVAKHSRTLLCHVCQSLTPWNGSGPK 61

Query: 65  FGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDDE 124
            GPT+SVC  C+ +          N G    D+DYDD + ++DDDDD  D          
Sbjct: 62  LGPTISVCNVCVGDGSGSTSREETNRGETYTDDDYDDANEEEDDDDDGGD---------- 121

Query: 125 SDDGNDDVDEDEDDEENQVVPWS 148
                   ++++DDEENQVVPWS
Sbjct: 122 --------EDEDDDEENQVVPWS 126
[Close]
BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: MIP1B_ARATH (B-box domain protein 31 OS=Arabidopsis thaliana GN=MIP1B PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.500e-10
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 

		  

Query: 6  KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPT 57
          +CELC   A++FCE+D A LC +CD  VHGANFL  +H R +LC  CQ  T
Sbjct: 30 RCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80
[Close]
BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: MIP1A_ARATH (B-box domain protein 30 OS=Arabidopsis thaliana GN=MIP1A PE=1 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.900e-9
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1 

		  

Query: 7  CELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKFG 66
          CELC   AT++CE+D A LC +CD  VH ANFL  +H R ++C  C+  T     G  F 
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFN 91

Query: 67 PTL 70
            L
Sbjct: 92 VVL 94
[Close]
BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.300e-8
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 

		  

Query: 5  RKCELC-SNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQ 54
          R C+ C S  AT+FC +D A LC +CD K+H AN L S+H R  LC +C+
Sbjct: 6  RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55
[Close]
BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: BBX32_ARATH (B-box zinc finger protein 32 OS=Arabidopsis thaliana GN=BBX32 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.300e-8
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 1 

		  

Query: 7  CELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGP 64
          CELC   A + C +D A LC  CD+K H +NFL ++H R ++C  C+S T    SGP
Sbjct: 5  CELCGAEADLHCAADSAFLCRSCDAKFHASNFLFARHFRRVICPNCKSLTQNFVSGP 61
[Close]
BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Match: COLX_ARATH (Putative zinc finger protein At1g68190 OS=Arabidopsis thaliana GN=At1g68190 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 7.300e-8
Identity = 25/53 (47.17%), Postives = 35/53 (66.04%), Query Frame = 1 

		  

Query: 3  VKRKCELCSNI-ATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQS 55
          ++R CE C    A ++C +D ANLC  CD+KVH AN L  +H RT+LC  C++
Sbjct: 10 MERVCEFCKAYRAVVYCIADTANLCLTCDAKVHSANSLSGRHLRTVLCDSCKN 62
[Close]
BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT4G27310.1 (B-box type zinc finger family protein)

HSP 1 Score: 112.1 bits (279), Expect = 3.100e-25
Identity = 73/163 (44.79%), Postives = 101/163 (61.96%), Query Frame = 1 

		  

Query: 5   RKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPK 64
           +KC+LC+ +A ++CESDQA+LC++CD KVHGANFLV+KH+R LLC  CQS T W  +G +
Sbjct: 3   KKCDLCNGVARMYCESDQASLCWDCDGKVHGANFLVAKHTRCLLCSACQSLTPWKATGLR 62

Query: 65  FGPTLSVCPGC--------------LIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDD 124
            GPT SVC  C              L E + ++  N+     +   ED+ D D+ +  DD
Sbjct: 63  LGPTFSVCESCVALKNAGGGRGNRVLSENRGQEEVNSFESEEDRIREDHGDGDDAESYDD 122

Query: 125 DNDDDGDNGYEDDESDDGNDDVDEDEDDEENQVVPWSYSVSHP 154
           D ++D D  Y DDE +D  DD D D+++ ENQVVPWS +   P
Sbjct: 123 DEEEDEDEEYSDDEDED--DDEDGDDEEAENQVVPWSAAAQVP 163
[Close]
BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT5G54470.1 (B-box type zinc finger family protein)

HSP 1 Score: 94.7 bits (234), Expect = 5.200e-20
Identity = 66/142 (46.48%), Postives = 90/142 (63.38%), Query Frame = 1 

		  

Query: 4   KRKCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGP 63
           K+KCELC  +A ++CESDQA+LC++CD KVHGANFLV+KH R LLC  CQS T W  SG 
Sbjct: 3   KKKCELCCGVARMYCESDQASLCWDCDGKVHGANFLVAKHMRCLLCSACQSHTPWKASGL 62

Query: 64  KFGPTLSVCPGCLIERQRRDVGNNGNGGREVADEDYDDDDNDDDDDDDNDDDGDNGYEDD 123
             GPT+S+C  CL  ++     N+   GR        D + + +++    +DG   Y D+
Sbjct: 63  NLGPTVSICESCLARKKNN---NSSLAGR--------DQNLNQEEEIIGCNDGAESY-DE 122

Query: 124 ESDDGNDDVDEDEDDEENQVVP 146
           ESD+     DE+E++ ENQVVP
Sbjct: 123 ESDE-----DEEEEEVENQVVP 127
[Close]
BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT3G21890.1 (B-box type zinc finger family protein)

HSP 1 Score: 65.9 bits (159), Expect = 2.600e-11
Identity = 28/51 (54.90%), Postives = 35/51 (68.63%), Query Frame = 1 

		  

Query: 6  KCELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPT 57
          +CELC   A++FCE+D A LC +CD  VHGANFL  +H R +LC  CQ  T
Sbjct: 30 RCELCDGDASVFCEADSAFLCRKCDRWVHGANFLAWRHVRRVLCTSCQKLT 80
[Close]
BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT4G15248.1 (B-box type zinc finger family protein)

HSP 1 Score: 62.8 bits (151), Expect = 2.200e-10
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 1 

		  

Query: 7  CELCSNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQSPTLWSGSGPKFG 66
          CELC   AT++CE+D A LC +CD  VH ANFL  +H R ++C  C+  T     G  F 
Sbjct: 32 CELCGENATVYCEADAAFLCRKCDRWVHSANFLARRHLRRVICTTCRKLTRRCLVGDNFN 91

Query: 67 PTL 70
            L
Sbjct: 92 VVL 94
[Close]
BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Match: AT2G24790.1 (CONSTANS-like 3)

HSP 1 Score: 59.3 bits (142), Expect = 2.400e-9
Identity = 25/50 (50.00%), Postives = 33/50 (66.00%), Query Frame = 1 

		  

Query: 5  RKCELC-SNIATIFCESDQANLCYECDSKVHGANFLVSKHSRTLLCHICQ 54
          R C+ C S  AT+FC +D A LC +CD K+H AN L S+H R  LC +C+
Sbjct: 6  RLCDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWLCEVCE 55
The following BLAST results are available for this feature:
BLAST of Spo23893.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5
Match NameE-valueIdentityDescription
gi|731377491|ref|XP_010667890.1|3.6e-4771.1PREDICTED: B-box zinc finger p... [more]
gi|1000954520|ref|XP_015578162.1|3.0e-3057.3PREDICTED: zinc finger protein... [more]
gi|1000954522|ref|XP_015578163.1|3.0e-3057.3PREDICTED: zinc finger protein... [more]
gi|1009109030|ref|XP_015887897.1|6.8e-3055.1PREDICTED: zinc finger protein... [more]
gi|1009109028|ref|XP_015887891.1|6.8e-3055.1PREDICTED: zinc finger protein... [more]
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BLAST of Spo23893.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5
Match NameE-valueIdentityDescription
A0A0J8B260_BETVU2.5e-4771.1Uncharacterized protein OS=Bet... [more]
A0A061GF15_THECC6.1e-3055.9B-box type zinc finger family ... [more]
A0A061GMY3_THECC6.1e-3055.9B-box type zinc finger family ... [more]
V4UE20_9ROSI1.0e-2953.1Uncharacterized protein OS=Cit... [more]
V4W880_9ROSI1.0e-2953.1Uncharacterized protein OS=Cit... [more]
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BLAST of Spo23893.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MIP1B_ARATH4.5e-1054.9B-box domain protein 31 OS=Ara... [more]
MIP1A_ARATH3.9e-944.4B-box domain protein 30 OS=Ara... [more]
COL3_ARATH4.3e-850.0Zinc finger protein CONSTANS-L... [more]
BBX32_ARATH7.3e-845.6B-box zinc finger protein 32 O... [more]
COLX_ARATH7.3e-847.1Putative zinc finger protein A... [more]
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BLAST of Spo23893.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 5
Match NameE-valueIdentityDescription
AT4G27310.13.1e-2544.7B-box type zinc finger family ... [more]
AT5G54470.15.2e-2046.4B-box type zinc finger family ... [more]
AT3G21890.12.6e-1154.9B-box type zinc finger family ... [more]
AT4G15248.12.2e-1044.4B-box type zinc finger family ... [more]
AT2G24790.12.4e-950.0CONSTANS-like 3[more]
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000315B-box-type zinc fingerPFAMPF00643zf-B_boxcoord: 4..45
score: 2.
IPR000315B-box-type zinc fingerSMARTSM00336bboxneu5coord: 2..48
score: 3.4
IPR000315B-box-type zinc fingerPROFILEPS50119ZF_BBOXcoord: 2..48
score:
NoneNo IPR availablePANTHERPTHR31717FAMILY NOT NAMEDcoord: 1..153
score: 7.6
NoneNo IPR availablePANTHERPTHR31717:SF7B-BOX DOMAIN PROTEIN 26-RELATEDcoord: 1..153
score: 7.6

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006550 isoleucine catabolic process
biological_process GO:0009845 seed germination
biological_process GO:0016567 protein ubiquitination
biological_process GO:0009555 pollen development
biological_process GO:0048573 photoperiodism, flowering
biological_process GO:0042967 obsolete acyl-carrier-protein biosynthetic process
biological_process GO:0016573 histone acetylation
biological_process GO:0048439 flower morphogenesis
biological_process GO:0010227 floral organ abscission
biological_process GO:0009553 embryo sac development
biological_process GO:0071805 potassium ion transmembrane transport
biological_process GO:0006103 2-oxoglutarate metabolic process
biological_process GO:0010114 response to red light
biological_process GO:0043132 NAD transport
biological_process GO:0042538 hyperosmotic salinity response
biological_process GO:0009686 gibberellin biosynthetic process
biological_process GO:0009740 gibberellic acid mediated signaling pathway
biological_process GO:0009821 alkaloid biosynthetic process
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0009094 L-phenylalanine biosynthetic process
biological_process GO:0000162 tryptophan biosynthetic process
biological_process GO:0006571 tyrosine biosynthetic process
biological_process GO:0046345 abscisic acid catabolic process
biological_process GO:0048838 release of seed from dormancy
biological_process GO:0009954 proximal/distal pattern formation
biological_process GO:0009611 response to wounding
biological_process GO:0080065 4-alpha-methyl-delta7-sterol oxidation
biological_process GO:0006552 leucine catabolic process
biological_process GO:0006633 fatty acid biosynthetic process
biological_process GO:0006810 transport
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006913 nucleocytoplasmic transport
biological_process GO:0007264 small GTPase mediated signal transduction
biological_process GO:0046520 sphingoid biosynthetic process
biological_process GO:0009813 flavonoid biosynthetic process
biological_process GO:0015031 protein transport
biological_process GO:0016126 sterol biosynthetic process
biological_process GO:0006574 valine catabolic process
biological_process GO:0006629 lipid metabolic process
biological_process GO:0009753 response to jasmonic acid
biological_process GO:0046950 cellular ketone body metabolic process
biological_process GO:0006811 ion transport
biological_process GO:0019761 glucosinolate biosynthetic process
biological_process GO:0010048 vernalization response
biological_process GO:0008152 metabolic process
biological_process GO:0030003 cellular cation homeostasis
biological_process GO:0032259 methylation
biological_process GO:0070838 divalent metal ion transport
biological_process GO:0042128 nitrate assimilation
biological_process GO:0006855 drug transmembrane transport
biological_process GO:0006857 oligopeptide transport
biological_process GO:0006950 response to stress
biological_process GO:0046685 response to arsenic-containing substance
biological_process GO:0009637 response to blue light
biological_process GO:0050789 regulation of biological process
biological_process GO:0010182 sugar mediated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0006508 proteolysis
biological_process GO:0055085 transmembrane transport
biological_process GO:0006865 amino acid transport
biological_process GO:0006040 amino sugar metabolic process
biological_process GO:0009987 cellular process
biological_process GO:0007275 multicellular organism development
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0009639 response to red or far red light
biological_process GO:0009688 abscisic acid biosynthetic process
biological_process GO:0006744 ubiquinone biosynthetic process
biological_process GO:0006486 protein glycosylation
biological_process GO:0050896 response to stimulus
biological_process GO:0042545 cell wall modification
biological_process GO:0045490 pectin catabolic process
biological_process GO:0045893 positive regulation of transcription, DNA-templated
biological_process GO:0010264 myo-inositol hexakisphosphate biosynthetic process
biological_process GO:0009658 chloroplast organization
biological_process GO:0009411 response to UV
biological_process GO:0009812 flavonoid metabolic process
biological_process GO:0009408 response to heat
biological_process GO:0016123 xanthophyll biosynthetic process
biological_process GO:0000160 phosphorelay signal transduction system
biological_process GO:0010017 red or far-red light signaling pathway
biological_process GO:0010207 photosystem II assembly
biological_process GO:0006352 DNA-templated transcription, initiation
biological_process GO:0044260 cellular macromolecule metabolic process
biological_process GO:0009811 stilbene biosynthetic process
biological_process GO:0009809 lignin biosynthetic process
biological_process GO:0009805 coumarin biosynthetic process
biological_process GO:0009640 photomorphogenesis
biological_process GO:0005992 trehalose biosynthetic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0016311 dephosphorylation
biological_process GO:0044238 primary metabolic process
biological_process GO:0048608 reproductive structure development
biological_process GO:0009409 response to cold
biological_process GO:0009605 response to external stimulus
biological_process GO:0006598 polyamine catabolic process
biological_process GO:0009737 response to abscisic acid
biological_process GO:0006333 chromatin assembly or disassembly
biological_process GO:0009414 response to water deprivation
cellular_component GO:0009941 chloroplast envelope
cellular_component GO:0005576 extracellular region
cellular_component GO:0000151 ubiquitin ligase complex
cellular_component GO:0005789 endoplasmic reticulum membrane
cellular_component GO:0031969 chloroplast membrane
cellular_component GO:0005773 vacuole
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0005737 cytoplasm
cellular_component GO:0044428 nuclear part
cellular_component GO:0005783 endoplasmic reticulum
cellular_component GO:0005622 intracellular
cellular_component GO:0005667 transcription factor complex
cellular_component GO:0005777 peroxisome
cellular_component GO:0005829 cytosol
cellular_component GO:0005739 mitochondrion
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0000785 chromatin
cellular_component GO:0005618 cell wall
cellular_component GO:0005794 Golgi apparatus
cellular_component GO:0000123 histone acetyltransferase complex
cellular_component GO:0009706 chloroplast inner membrane
cellular_component GO:0005759 mitochondrial matrix
cellular_component GO:0009507 chloroplast
cellular_component GO:0005634 nucleus
cellular_component GO:0043231 intracellular membrane-bounded organelle
cellular_component GO:0016020 membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0046592 polyamine oxidase activity
molecular_function GO:0005506 iron ion binding
molecular_function GO:0020037 heme binding
molecular_function GO:0005515 protein binding
molecular_function GO:0003682 chromatin binding
molecular_function GO:0008131 primary amine oxidase activity
molecular_function GO:0004805 trehalose-phosphatase activity
molecular_function GO:0016207 4-coumarate-CoA ligase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0016711 flavonoid 3'-monooxygenase activity
molecular_function GO:0015293 symporter activity
molecular_function GO:0052663 antheraxanthin epoxidase activity
molecular_function GO:0052662 zeaxanthin epoxidase activity
molecular_function GO:0008762 UDP-N-acetylmuramate dehydrogenase activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016740 transferase activity
molecular_function GO:0032440 2-alkenal reductase [NAD(P)] activity
molecular_function GO:0008234 cysteine-type peptidase activity
molecular_function GO:0008233 peptidase activity
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups
molecular_function GO:0003677 DNA binding
molecular_function GO:0035251 UDP-glucosyltransferase activity
molecular_function GO:0045330 aspartyl esterase activity
molecular_function GO:0016829 lyase activity
molecular_function GO:0009540 zeaxanthin epoxidase [overall] activity
molecular_function GO:0016987 sigma factor activity
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0000254 C-4 methylsterol oxidase activity
molecular_function GO:0008081 phosphoric diester hydrolase activity
molecular_function GO:0016787 hydrolase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
molecular_function GO:0005525 GTP binding
molecular_function GO:0003924 GTPase activity
molecular_function GO:0004419 hydroxymethylglutaryl-CoA lyase activity
molecular_function GO:0008168 methyltransferase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0045430 chalcone isomerase activity
molecular_function GO:0080048 GDP-D-glucose phosphorylase activity
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0003779 actin binding
molecular_function GO:0005215 transporter activity
molecular_function GO:0016757 transferase activity, transferring glycosyl groups
molecular_function GO:0015238 drug transmembrane transporter activity
molecular_function GO:0010295 (+)-abscisic acid 8'-hydroxylase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0003700 DNA-binding transcription factor activity
molecular_function GO:0003824 catalytic activity
molecular_function GO:0030170 pyridoxal phosphate binding
molecular_function GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity
molecular_function GO:0080130 L-phenylalanine:2-oxoglutarate aminotransferase activity
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0015297 antiporter activity
molecular_function GO:0047077 Photinus-luciferin 4-monooxygenase (ATP-hydrolyzing) activity
molecular_function GO:0005267 potassium channel activity
molecular_function GO:0051724 NAD transmembrane transporter activity
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005516 calmodulin binding
molecular_function GO:0004402 histone acetyltransferase activity
molecular_function GO:0003712 transcription coregulator activity
molecular_function GO:0030599 pectinesterase activity
RNA-Seq Expression
   



Co-expression
Gener valueExpression
Spo126691.00Barchart | Table
Spo020440.78Barchart | Table
Spo113920.78Barchart | Table
Spo106770.77Barchart | Table
Spo230780.76Barchart | Table
Spo011480.76Barchart | Table
Spo122680.76Barchart | Table
Spo252520.75Barchart | Table
Spo163160.74Barchart | Table
Spo010870.74Barchart | Table
Spo213820.74Barchart | Table
Spo010930.74Barchart | Table
Spo252760.73Barchart | Table
Spo075790.73Barchart | Table
Spo206020.73Barchart | Table
Spo092170.72Barchart | Table
Spo081680.72Barchart | Table
Spo073010.72Barchart | Table
Spo071090.72Barchart | Table
Spo052580.71Barchart | Table
Spo143460.71Barchart | Table
Spo259190.71Barchart | Table
Spo263350.71Barchart | Table
Spo212470.71Barchart | Table
Spo132600.70Barchart | Table
Spo128890.70Barchart | Table
Spo015330.70Barchart | Table
Spo269810.70Barchart | Table
Spo197290.70Barchart | Table
Spo172380.70Barchart | Table
Spo157070.70Barchart | Table
Spo149480.70Barchart | Table
Spo141330.70Barchart | Table
Spo094120.70Barchart | Table
Spo136150.70Barchart | Table
Spo011170.70Barchart | Table
Spo005290.69Barchart | Table
Spo016930.69Barchart | Table
Spo028330.69Barchart | Table
Spo038990.69Barchart | Table
Spo055480.69Barchart | Table
Spo103380.69Barchart | Table
Spo131140.69Barchart | Table
Spo152930.69Barchart | Table
Spo159900.69Barchart | Table
Spo172030.69Barchart | Table
Spo194610.69Barchart | Table
Spo194870.69Barchart | Table
Spo222920.69Barchart | Table
Spo252510.69Barchart | Table
Spo254440.69Barchart | Table
Spo256890.69Barchart | Table
Spo243810.68Barchart | Table
Spo150740.68Barchart | Table
Spo010810.68Barchart | Table
Spo217110.68Barchart | Table
Spo252620.68Barchart | Table
Spo044240.68Barchart | Table
Spo112010.68Barchart | Table
Spo114160.68Barchart | Table
Spo114410.68Barchart | Table
Spo118780.68Barchart | Table
Spo244900.68Barchart | Table
Spo060120.68Barchart | Table
Spo280820.67Barchart | Table
Spo147180.67Barchart | Table
Spo154580.67Barchart | Table
Spo083410.67Barchart | Table
Spo280910.67Barchart | Table
Spo048810.67Barchart | Table
Spo210350.67Barchart | Table
Spo222770.67Barchart | Table
Spo005610.67Barchart | Table
Spo102190.67Barchart | Table
Spo099210.67Barchart | Table
Spo216690.66Barchart | Table
Spo058980.66Barchart | Table
Spo027750.66Barchart | Table
Spo017210.66Barchart | Table
Spo225450.66Barchart | Table
Spo239930.66Barchart | Table
Spo134630.66Barchart | Table
Spo067190.66Barchart | Table
Spo119410.66Barchart | Table
Spo090550.66Barchart | Table
Spo207910.66Barchart | Table
Spo216170.66Barchart | Table
Spo216720.66Barchart | Table
Spo039220.65Barchart | Table
Spo020170.65Barchart | Table
Spo185700.65Barchart | Table
Spo092030.65Barchart | Table
Spo246770.65Barchart | Table
Spo123850.65Barchart | Table
Spo084670.65Barchart | Table
Spo048040.65Barchart | Table