Spo23919 (gene)

Overview
NameSpo23919
Typegene
OrganismSpinacia oleracea (Spinach)
DescriptionUnknown protein
LocationSuper_scaffold_96 : 307848 .. 310005 (+)
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCGCTGTTTGGTTATGGTTAGTCCGTTATTAACTGATATGTAGATATTTTTTATGGACGATAATGATTCTGATTGAAATTTTGTAAAAAAGAACCGGAAGAAGTTATAATCTGATGAGAACTAGGGTTAAGGTGGGTTTGAATCTAAATTTTGAGGCTGAATAAGGGATTCGTGTTACCAGTTGAGTTTCTCACTTGCTTATTTTCGGTAATTATGGGTTCAATTTCGTGTTATATGTTGGGATTTTTTGCATAGAGTTATGAGGTGAATTTTGGATTTTTGGTAAATTTGTTTTTATTGGAAATTGTTGCTGTGATTTTATGGTTTTTTGTCTAGAATTATGATTAACTTGGCCTGGGTTTTTTAGCATTACATTAGATTACTGAAGAAACTTACTGAATTGCTTGGTGTGTCTTAGTAACATCACTCACAATATATCCAGGTGTGCCTTAAGAAGTATTCTTTTGGAAATTCTAGTTTTTCGGGGGTCTTTAACAAACTTTATCTCACCCGTAAATGCTAATCTAATATCAGGTATAGGTGTGAGGAAATCAAAATCCAAGCGTGGGAGAGCCCACAAAAAGTGAAATTGGAGGAAGAGTTGAGGAGATTAGAGGTATATCTGAGTCTATAACAATTGTAGCTTTTTGCTCAAATCAAATCCCAACCTGCTTAATTCTGAATTCAATCTAAATATCTGAAGCTTAAAATATATAGTGAATCGTGATGTATTAAGATGATTGCATTGATATTAAATGTTGTGCTGGAATGTAAAAATTGTACTCCCTCCGTCCCAAAATTATTGTCCTGTTTTCTAAATTGGGCGTCCCAAAATTATAGTCCTGTTTCTAATTTTGGCTACTAAGGTTCCCACTTTCTCATGTACTATATTAATTAAAAAATAAATTGAAAACCCCACCCATGTACTATATTCCACTTTCCTATGTACTATATTATCTTTCACATGTACTTTATTCCACTTTTCCATACAACTCAATCATCATTTGTACTTTATTCCACTTATTCATTTACTATATTCCACTTTTCTTAAAATCCGTGTTTTTGGTCAAACAGGACAATAATTATGGGACGGAGGGAGTAGATCATTAGTTTAAACATGTTTTTCTGAAGTGCTTGCAGAGTTGTAGTAGGAGATAATCCTTTGATTCCAAGTTAATGCTTAGTTGCTTACCTTTTCTGCGGTTACAGAAAATGTCATGTGTTATGAATTTTGTTATGGAAATAATGAATACTAGTAAGACATTTACATTTTACAGAAAATATAGCCTTTGTTCTTTTACTTCAGGTGTACTCTAACTCATCTATCTGCCAGGTGTCCATCAAAACAATCAAGTAATTATAAAGGCCATAAAACCACAAAGTCCACAATCAATCATGTCGTATCCTAGCTAGTGGTAACGATTGAGGGCTCGTGTCACGGATTTGAAACCCGCCTCCCCCATTTATATTTTTTAATGCCCTTATGTCTCATTCGTCAAAAAAAAAAGAGCCATAAAAATTGTATGACCATTTTAAACCTAAGAAATTCAGTTTTGGATGAAAGAACTTGGTGATAATTAATTTTAGTAGTAGATAGCAAGGTAGTTAACGACTTAGACTACCTTTCTGCTTAGGCTAATAATCTAGGAGTAAATTTTTCATTGAAGAAATGACTGTAATTTTTTCGATGTACAAACGAATTGCGGAAAAAACAATAAAAAAGAGCAGAAAATTAGAGTAACAAGGAACACCATACTGAACTTTATTAGAGTCATTAATATATGTAATGTTACACAACTGAATTTCTAAAAACAGAACAGTACACTTTTGACAGAACTGGACTTTACGAAACAAACTGGACTGAACTTTATGAAATAGAACTATACAGAACTGAACAGAATACTGTAGGAGTGCAGGGTTAGGGGCTGATGGGTCCGAAGGCAGGAGTTGCAGGGGCTGGTGGGTCAGATATGGGCTGCAGGGTAAGGTCCAAGCTTGGATTGTAGGATCAGGTTCAGGTTTGAGCTGCTGTCAGGTCTGAAGTCTTGGTTACATATGCTATACAACCTCTCTAAGAACAAAAACCCACTACACAACACATATAAGCATACTAGCATTCAATATCTTTATATTTCCTATGCTCTTAATAAATAG

mRNA sequence

ATGTTCGCTGTTTGGTTATGGTATAGGTGTGAGGAAATCAAAATCCAAGCGTGGGAGAGCCCACAAAAAGTGAAATTGGAGGAAGAGTTGAGGAGATTAGAGGTATATCTGAGTGTCCATCAAAACAATCAAGTAATTATAAAGGCCATAAAACCACAAAGTCCACAATCAATCATGTCGTATCCTAGCTAGATCAGGTTCAGGTTTGAGCTGCTGTCAGGTCTGAAGTCTTGGTTACATATGCTATACAACCTCTCTAAGAACAAAAACCCACTACACAACACATATAAGCATACTAGCATTCAATATCTTTATATTTCCTATGCTCTTAATAAATAG

Coding sequence (CDS)

ATGTTCGCTGTTTGGTTATGGTATAGGTGTGAGGAAATCAAAATCCAAGCGTGGGAGAGCCCACAAAAAGTGAAATTGGAGGAAGAGTTGAGGAGATTAGAGGTATATCTGAGTGTCCATCAAAACAATCAAGTAATTATAAAGGCCATAAAACCACAAAGTCCACAATCAATCATGTCGTATCCTAGCTAG

Protein sequence

MFAVWLWYRCEEIKIQAWESPQKVKLEEELRRLEVYLSVHQNNQVIIKAIKPQSPQSIMSYPS
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Spo23919.1Spo23919.1mRNA


Homology
The following BLAST results are available for this feature:
BLAST of Spo23919.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23919.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23919.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 0
Match NameE-valueIdentityDescription
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BLAST of Spo23919.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 23..43
scor

GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006260 DNA replication
biological_process GO:0016192 vesicle-mediated transport
biological_process GO:0006807 nitrogen compound metabolic process
biological_process GO:0071704 organic substance metabolic process
biological_process GO:0008380 RNA splicing
biological_process GO:0006886 intracellular protein transport
biological_process GO:0006468 protein phosphorylation
biological_process GO:0009069 serine family amino acid metabolic process
cellular_component GO:0005840 ribosome
cellular_component GO:0005829 cytosol
cellular_component GO:0005730 nucleolus
cellular_component GO:0030126 COPI vesicle coat
cellular_component GO:0005634 nucleus
molecular_function GO:0004712 protein serine/threonine/tyrosine kinase activity
molecular_function GO:0005488 binding
molecular_function GO:0004674 protein serine/threonine kinase activity
molecular_function GO:0005524 ATP binding
molecular_function GO:0016779 nucleotidyltransferase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0005198 structural molecule activity
RNA-Seq Expression