Spo24010 (gene) | SpinachBase

Overview


Name	Spo24010
Type	gene
Organism	Spinacia oleracea (Spinach)
Description	Zinc finger family protein
Location	SpoScf_00396 : 73307 .. 79738 (-)

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCCGCCCCATTAGGTGAATAAGATTAAAATGAAGCTCACTATCACCCAACTACCTAACCCACCGGTTTGAAATCTCCGATTGTATTTTCCCTAGCAATTTTGAGAAATTTGGTCCAAAAATCTCAATGACAACAACTGCCCTTCCCGCCATTTTCTCTCTCCTCTCTTCCTCCTCCTGCTACTATCCAACCAAATCCACACTCGTGTTGCCACCTTCTTTCATACCATTCAATTTCTCCCCCAAATCAAACCCTAGGTTAATTTAACTATGAGCTTAATTTTTCAATGAATTATTAATTAACTTCCTGAATTATTTAGAGTTTATTTTCCTCTTTTGTGCTGCAGGTTAAGAATTTCCCATAAAGTTGCAGTATCATTCAAGAATCAACGTCATTGGTTACCTTCTTGCTGCAGTGGTAATGCAGAAATCAACCCAGATACAATCGATGATTCTTCTAAGGTATTTCTCTCTCTCTCAATTATGCAAGTAAGATATGTTCGCGGTTGCAACTACTATTCTATGGTGCTGCTCCAGCCGCCACCGGCCGGGGCTAGCCAGAGTCGTTGCGAACGACAACGGTTTTTAGTTTCAGGGAACTAATTTTTTGTCATTCTCAACTACTAATCCCCCCCCCCCCCTCCACCTTTTATTATTTCAATAGCAGAATGATTTCCTCTTTTGTTGAATTTTACACTGATTACTCGATGCAGTTGGTAGTTCTGTTAATTGTTGTGCAAGGTTGAAAATTTGAATTGATTCTTGATTTTAAATTTCCATTTTTATTTGTTGTCCTTTGGTATACATGTACGTGTTTGGATAAGTAGTGTTTTGATGAGGTTAGCTATTAGTAGCGGCTTCGAAAAATAATGCCAAGCATAGCATAATACTGGTATGTCGGACGAATTAGTTTACATATTTTCAATTGATAGATAGGGTACTATAGTATATACCAATATGGTAGTTAGTAACTATAGCCTTAATACCTATAATCGTAGTTAATTTGGTCACTTAGATTTTTAAATTGTACTACTTGATCCTAGTCCATTACCCCTAATCCAAGCATGCCCTTAGGCTTAAGTGTTCTGTACATAGATAAAAAATGCGGTATCGGTCACGGTCGCGGGATCGGTCGCGGAGTCTCGGTAACGGAAATGATGCGTTAGTCGCGGACCGTGTCGCGGTTGTCGCGTAGGAATTTGAAATTTAAAAAGAAGCCCCATGTCAGCCCCATTCACTACCTACCCTAGTTCCCCTCCCCTAAACCATACACGTGACATAATTAAAATGAATTCCTTTGTCTACCTTCTCTCTCCTCTCTTGTTTTAGATTTGAAAATGGAGTTCTCTACTCTATTTCAATGGAGTTTCTCCATTTCTTTCCTTTTTCCCTTTCTTTTTGTCGAAAACATGGGGAATTCGGCTGAAAACCGAGTAGATGTGAGGTTTATAATGTTCAATGCGGACAAAATTCGTTCGGGTCGGTTGTACCGGCCGAGATCTCGCCGTTTTTAAAAACACCTTTACAACTCGGGATATCTCGTATCGCCAGCCTCCAAAACCTTGTTAACTCGGGCGATACGAGTTAACTCGGGCTAGTTTTTACACCATGGTTCTGTATGAGGGCAAAGGTATACGATTTTTCAAATCGAAGCAGGGCATGTAAGTATTCTTACGTGTTCCTCTTTTACCTCTCAATCTCTCATTATCATCCACACGGATCTTTGAATAGCATGCTGAAACGGGGAAGAGGTTTTTAGTGTAGCCATTGCACAATCCTCTTCTTGACCTGGATTTTGAAGAGGGTTTTGCTGGTTAAGCAGTTACTTTGGTCCGTGACATTGATCAACTCAGGTTCTTAACATTGTGGCTAGAGTAGGAATTTGGTGATGAATCTTGGAGATTACAAACCACTGTGTGGCTTTGGTATTGTAGCATGTTGATATTAGTGACCATATGATCCATGCTTTGTGCCCTACCCTGATTATGCGTTGTAGTTCTATGAGAAAGCTCTTTTTCTCCTGGATTTGGAGTAACCTTCAGAAAGGATTAAAGTTTATTACCAATATGGAAATTCGAAATGGGTACATCCCAAAGGTAGAATCTGCAATTGATTGGTACATGGAAATAGCTTTTGCATGCGTTTTTATATAGACCGTATATGACTTTTATCTAATCCCATAAAGCTGACTTAACGTATCATGGAGCTGACCTGACATGCGACTCGGATATGATAATCTATGGGGTTTTATGATTGAGAAATTAATCAGATCATAATTTCAATCCTTACCTCTCCTACTACTTGTATGGTGACAGGCAGCTCTGAAATTCCTATTTTCTTACTCGTTAAAGTATGGAGCGGGGCGTTGGCGCTTCGGCTAGCGAAATTCAAATTGAGTGAACTAAGCTTGTCTACCCGTCGAAGATTAGTAGTCGAATGCTGACGCAGCTCCCCTTCTTCTTAATCCGTTCATCTTAAGTGCTTTTTTATTGTACTTATTGACAATTTTTGCTTGATCATCTCTGAAATGTTCATAACAAGGTTTCTGTAGGGGGCGGCTGAATCCTTCATGCCTTCATTGATGACCAGCCCATTACCACACTTTGATAGGTGCCACATCCGTTCCAATTCGATTTCACAGTAGTAATTAGCTGATCAGAACTCGTAATTGTATTAGTACTTTTAGTAAAAGAAAATAATGAAATAGATGAGTGAAGATTAGAAAAAAACATTAGAAAGCAGGCTTACGCTATTATCTATAATCGTTACAGGAGAATGGACTTGGACTTGATTGGTTTCCAGCGAGCAACTAATTTTTCTGATCAAAGGCTGGTCACTCCGCCCCTTGGACAGCTGGAGATGATCCGGATGAGTAGACAGACGATTGATGTATCAGACTGGCTCATATAAGAGTTTTATCCTGTCTGGAAGCAATGAACTGAACTTGATTTGAAACATAGGAAGTATACCAACCAAAGGTTCTTAGCAATTGAATTATGAGTATTTGACTTACGGTTTTGCCAATGCTCGATGTTCACTAGTGGAAGAATAGATGATTTGGTACATGAGGGGCGGCAACTAAAGAGGTAGCGAGACTGACCGCAATTGCACTAGGAAAGCGAAGAGCTTTATTTCCCAAACCAGCCCCATGATAGGGTTAGCGGTGTTTTGCTTCGCACTTTACGCTCCGGGACCGATTAGAGAATGTGTCCACCGATCATAATAAGAACAGGCTTTCTTGTTCATCTGTCAAGGGTTGGTAACGTTTTGTGTGTTGTATGATTAAACCACAAGGTAATTTCCAAGGGAGATGGCCAGCACATTCGTTTTTTTAACTCAAGTTAGGGTCCAAAGGAAGTGAAGTCAATTCTCCCTTTGGAGACCCAGGTTAATGCCACTACCTCTTTGCTTCTGCGGGTTCTAGGCCCACTTCTGCACCATGCGTGCATGGTGGCGGGAAAGAATTCTATTAGTCGGTTTGAATCCGGCCGGTTCCTTCACTTAAGCGATTACATACCTCAAAACTTCCTCTCAAAATTTTAAGAAGAAAATAGAATATATATCCTACCACCTACCAATCTAGAGCTTTGCTTTTTGTTTTCCTCAACAGAAAACCCCTGCTGAAGATTTGATGAGCAGTGACTCATTCAATCTCTCCTTACCTTTTTGAGATGAGGCCTATTATTAGTTACTACTATCTTTGAGTCATATTGAGGAGTTAAGACAACAAATATTGCTGATAAAGTTTAAACCAGTCAACATATAAAGGCCTTAAGATGGTTGTTTCACAACTATACTTTGGGCTGTAAGTTGGAACCGGTCAAGGAGGAAACAGAGCACTTAATTCTATTGCAACATTAGTGTATAAAGTTTTACCATCTTGATCACTTGTGTCTTATACTCTTATTGAATGAGAATGATAACGGTGGTCGTGGTTCATCTTTTGGAAGATTGTTGTTTATTCACAATGATTACTGGATATTTATACTCTTATTGAATGAGAATGATAACGGTGGTCGTGGTTCATCTTTTGGAAGATTGTTGTTTATTCACAATGATTACTGGATATACTTTTTTTTCATATGATTAAGGTCGTCCGTTTGTTGTACATCTGCAGGAATCAAGTATTAACGTACAGCTTCCAAGGAGAAGCTTGCTAGTGCAATTTACTTGTAATGCTTGTGGCGAAAGAACAAAACGACTAATAAATAGATTAGCTTATGAACGAGGAACTGTGTTTGTCCAGGTATTTTTGAACGAATATCTTTTTGTAAGACATCTGCATATTTGTTGAAGATATTATGTCAACATAACTTATTATAAATATATCATATTTTATTTACTTCGTGGAAATGCAACGATAAAATGTAGGTTTTTTGTGCCTTCGGCTTTTAGTTTGTGTTTATGTGACATATTGTCTTTTAGTAACGATTGTATTGGGAATTGGAAAGATTCCTGTATTTATTACCAGCTTCTATTATTATGTTATCGAGGAAGCATTGTTGTTGAATATGTTGAAAGCAAAAGTAAAAATTAACTTCTAGGATGTTGTATTGTTCGATCTGTTTGTTTCTACAAATAGGAGTACTCACTTTTATTTAATTGATTTAAATAATGACATGCTATTTTTTATTTTTTTATTTATGATGTTTTATGTTTTTCTTACTTGTTGCTAAGTATTTGATGTTTCAAAATCTTCTGATTTGAAAGAGAAACTTCTGCAACATTTCTCATTTATTCCTTGTGAAGCGGCTAAGATAATTTTATTTGTTTTAGTTGTTAATTAGAGAAAGAAACTAACATAAGACTAAGACATCATAATAATAGAAAAATGAAATAAAAGATCAGAGTGAGTTTTTATTTTGATAAAAAAGAATTTGTCAATTAAGAGAATAGTTACCGCATATTGATGGTTAGGGGAATTCATCTTCTACTCTCTCCACTCAGAGAAATTAGACCACTATGTTGGGATGGGATGGCATCTGTTATTTTCACCTCGAATGGGTCTCTCTTGTGGATGATAGTGGCTACTGGCTAGTAAATCCTTCATTAGTATTTCTGTCTTGTCTGCATTTCAAACAGCCTCCTTTTCCTATGTGAAGATATTTTTCAGGTTTTGGCTATCCATAACTTTCAAATAATAGCATGAAGGTATGGTCCTCATTATTCTTTGTTTCATCCTTATATTCATTGCCGCTCAAGTTGATCAAAGTCTAAGCGCTGGCTGAAATTTGCATCCTTGATGTACCCCCTTTAATTATTGATGAGCAGCTAAATGCCCTGTTGGGTGTTTGACAGAAATTTTGACTTGATTGTTTAGCAGAAATTTATACTTCATTTCTGAAAAAACATTGTGTGCTTAAAATAAAAGTAGATATGCTGTCAGTTACCCTTTTGACCTTGATCAGCCTCGTAAGCTGTATGATTTCACATATTTCAGAAGTTTGATCGGCCTCGTAAGCTGCATGATTTCAAATTGTCATAAACTGTAACTATTACCCCTGTGTTTCATCAGTGTGCAGGGTGTCTCAAGCATCACAAACTAGTTGACAACCTGGGCCTTGTGGTTGAATATGACTTTCGGAATGATACTGATCAAGATTAGGATCAAGATGCAGAATAGTTATGCCCCTGTTTGATTATTTGGACGCTTCTGTACGTCTCAAACTACCATCAATAGGAAGATAACCTCTTTCTTGGCGAGTGTGTCCCTTACAGTCATACAGAAACAATCTTAAATGTATTTTGATTTTTGAGGCTAAAATAGTTATGTGTATACTTCAACCTTTACAGATTTGCTCATATTCTTGAAATTTTGCATAACTAGGAAGTAACTTCAACACCCAATGATCTTTGATCTGTAACTTGACATCTTTCGGTCATTAAGTAGAGAGGAAGATTTGAATGTCAAAAGACCAGAAGGTGATGTGTGGCTCGACCCCAACGAAGGCTCATGCTTTCGGGTAGATTGGGCCTCAGCTGATATTTACTTGTCGGCCAACCTCACAAACTCTGATTGGGTCAAATACTTTGTTGAATAGAATGTTTTCATATGTATTTGAAATACTTATTCAGTTACATTGCATTAATTGAAGCTTCCACCAAGGTTTAGATTGGAAAACAAAAAGCAGAGCAGATGCTACAGGTCCTGTAATCCATTTGCTCCAGAATTGCCAGAGATGAAGTTGGTGTTGTATCCTCTGAATTGTAAGAGACAACCGTTGGAGGTGCATGATGGTGGCTGGCGTTTGGTGCTGATGAGGGACCATTTTCTGGCGCCAGACTTGGTTTATCCACTTTTATCTTTAAACAACAAGGCAAATTTGTCAAAAACTACCTTATAAAATATGATTTTTGCGAAAAACTACCTTATAAAAAAAATGTTGTAATAAACTACCTTATAAAATTTTTATGTTGTAATATACTACCTTTGG

mRNA sequence

CCCGCCCCATTAGGTGAATAAGATTAAAATGAAGCTCACTATCACCCAACTACCTAACCCACCGGTTTGAAATCTCCGATTGTATTTTCCCTAGCAATTTTGAGAAATTTGGTCCAAAAATCTCAATGACAACAACTGCCCTTCCCGCCATTTTCTCTCTCCTCTCTTCCTCCTCCTGCTACTATCCAACCAAATCCACACTCGTGTTGCCACCTTCTTTCATACCATTCAATTTCTCCCCCAAATCAAACCCTAGGTTAAGAATTTCCCATAAAGTTGCAGTATCATTCAAGAATCAACGTCATTGGTTACCTTCTTGCTGCAGTGGTAATGCAGAAATCAACCCAGATACAATCGATGATTCTTCTAAGGAATCAAGTATTAACGTACAGCTTCCAAGGAGAAGCTTGCTAGTGCAATTTACTTGTAATGCTTGTGGCGAAAGAACAAAACGACTAATAAATAGATTAGCTTATGAACGAGGAACTGTGTTTGTCCAGTGTGCAGGGTGTCTCAAGCATCACAAACTAGTTGACAACCTGGGCCTTGTGGTTGAATATGACTTTCGGAATGATACTGATCAAGATTAGGATCAAGATGCAGAATAGTTATGCCCCTGTTTGATTATTTGGACGCTTCTGTACGTCTCAAACTACCATCAATAGGAAGATAACCTCTTTCTTGGCGAGTGTGTCCCTTACAGTCATACAGAAACAATCTTAAATGTATTTTGATTTTTGAGGCTAAAATAGTTATGTGTATACTTCAACCTTTACAGATTTGCTCATATTCTTGAAATTTTGCATAACTAGGAAGTAACTTCAACACCCAATGATCTTTGATCTGTAACTTGACATCTTTCGGTCATTAAGTAGAGAGGAAGATTTGAATGTCAAAAGACCAGAAGGTGATGTGTGGCTCGACCCCAACGAAGGCTCATGCTTTCGGGTAGATTGGGCCTCAGCTGATATTTACTTGTCGGCCAACCTCACAAACTCTGATTGGGTCAAATACTTTGTTGAATAGAATGTTTTCATATGTATTTGAAATACTTATTCAGTTACATTGCATTAATTGAAGCTTCCACCAAGGTTTAGATTGGAAAACAAAAAGCAGAGCAGATGCTACAGGTCCTGTAATCCATTTGCTCCAGAATTGCCAGAGATGAAGTTGGTGTTGTATCCTCTGAATTGTAAGAGACAACCGTTGGAGGTGCATGATGGTGGCTGGCGTTTGGTGCTGATGAGGGACCATTTTCTGGCGCCAGACTTGGTTTATCCACTTTTATCTTTAAACAACAAGGCAAATTTGTCAAAAACTACCTTATAAAATATGATTTTTGCGAAAAACTACCTTATAAAAAAAATGTTGTAATAAACTACCTTATAAAATTTTTATGTTGTAATATACTACCTTTGG

Coding sequence (CDS)

ATGACAACAACTGCCCTTCCCGCCATTTTCTCTCTCCTCTCTTCCTCCTCCTGCTACTATCCAACCAAATCCACACTCGTGTTGCCACCTTCTTTCATACCATTCAATTTCTCCCCCAAATCAAACCCTAGGTTAAGAATTTCCCATAAAGTTGCAGTATCATTCAAGAATCAACGTCATTGGTTACCTTCTTGCTGCAGTGGTAATGCAGAAATCAACCCAGATACAATCGATGATTCTTCTAAGGAATCAAGTATTAACGTACAGCTTCCAAGGAGAAGCTTGCTAGTGCAATTTACTTGTAATGCTTGTGGCGAAAGAACAAAACGACTAATAAATAGATTAGCTTATGAACGAGGAACTGTGTTTGTCCAGTGTGCAGGGTGTCTCAAGCATCACAAACTAGTTGACAACCTGGGCCTTGTGGTTGAATATGACTTTCGGAATGATACTGATCAAGATTAG

Protein sequence

MTTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRHWLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERGTVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Spo24010.1	Spo24010.1	mRNA

Homology

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BLAST of Spo24010.1 vs. NCBI nr
Match: gi|902155022|gb|KNA05863.1| (hypothetical protein SOVF_186200 [Spinacia oleracea])

HSP 1 Score: 316.6 bits (810), Expect = 2.400e-83
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


		  
Query: 1   MTTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRH 60
           MTTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRH
Sbjct: 1   MTTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRH 60

Query: 61  WLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERG 120
           WLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERG
Sbjct: 61  WLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERG 120

Query: 121 TVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 155
           TVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD
Sbjct: 121 TVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 154

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BLAST of Spo24010.1 vs. NCBI nr
Match: gi|731340402|ref|XP_010681378.1| (PREDICTED: DNL-type zinc finger protein isoform X1 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 216.9 bits (551), Expect = 2.500e-53
Identity = 114/156 (73.08%), Postives = 125/156 (80.13%), Query Frame = 1


		  
Query: 1   MTTTALPAIFSLLSSSSCYYPTKSTL-VLPPSFIP-FNFSPKSNPRLRISHKVAVSFKNQ 60
           MT T +PAIFSLLSSSS Y P  ST    P +F P  NF+PK NPRLRISHK       Q
Sbjct: 1   MTATVIPAIFSLLSSSS-YRPITSTFHKYPLNFHPSLNFTPKLNPRLRISHKA-----KQ 60

Query: 61  RHWLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYE 120
            +W+PSCC GNA +N D  +DSSKE +IN QLPRRSLLVQFTC+ACGERTKRLINRLAYE
Sbjct: 61  YYWVPSCCGGNAGLNSDITNDSSKEPNINTQLPRRSLLVQFTCDACGERTKRLINRLAYE 120

Query: 121 RGTVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 155
           RGTVFVQCAGCL+HHKLVDNLGLVVEYDFRND D+D
Sbjct: 121 RGTVFVQCAGCLQHHKLVDNLGLVVEYDFRNDADED 150

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BLAST of Spo24010.1 vs. NCBI nr
Match: gi|731340404|ref|XP_010681379.1| (PREDICTED: uncharacterized protein LOC104896335 isoform X2 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 158.3 bits (399), Expect = 1.100e-35
Identity = 88/127 (69.29%), Postives = 97/127 (76.38%), Query Frame = 1


		  
Query: 1   MTTTALPAIFSLLSSSSCYYPTKSTL-VLPPSFIP-FNFSPKSNPRLRISHKVAVSFKNQ 60
           MT T +PAIFSLLSSSS Y P  ST    P +F P  NF+PK NPRLRISHK       Q
Sbjct: 1   MTATVIPAIFSLLSSSS-YRPITSTFHKYPLNFHPSLNFTPKLNPRLRISHKA-----KQ 60

Query: 61  RHWLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYE 120
            +W+PSCC GNA +N D  +DSSKE +IN QLPRRSLLVQFTC+ACGERTKRLINRLAYE
Sbjct: 61  YYWVPSCCGGNAGLNSDITNDSSKEPNINTQLPRRSLLVQFTCDACGERTKRLINRLAYE 120

Query: 121 RGTVFVQ 126
           RGTVFVQ
Sbjct: 121 RGTVFVQ 121

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BLAST of Spo24010.1 vs. NCBI nr
Match: gi|743797737|ref|XP_011008859.1| (PREDICTED: mitochondrial protein import protein ZIM17 [Populus euphratica])

HSP 1 Score: 141.0 bits (354), Expect = 1.800e-30
Identity = 78/149 (52.35%), Postives = 98/149 (65.77%), Query Frame = 1


		  
Query: 11  SLLSSSSCYYPTK-----STLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRHW--LP 70
           S L S +C  P       + L+ P S+ P +FS  +NPRLRISH  A+  K  R    + 
Sbjct: 14  SFLPSITCMKPNPKRKPINPLLFPNSYQPISFST-TNPRLRISHTEAILPKRSRRLFVVS 73

Query: 71  SCCSGNAEINPDTIDDSSKESS--INVQLPRRSLLVQFTCNACGERTKRLINRLAYERGT 130
               GN+E  P+   +   E S  I+++LPRRSLLVQFTCN CGER++RLINRLAYERG 
Sbjct: 74  GLVDGNSETYPEVESNDLNEESATIDIKLPRRSLLVQFTCNECGERSQRLINRLAYERGL 133

Query: 131 VFVQCAGCLKHHKLVDNLGLVVEYDFRND 151
           VFVQCAGC ++HKL DNLGL+VEYD R +
Sbjct: 134 VFVQCAGCERYHKLADNLGLIVEYDLREE 161

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BLAST of Spo24010.1 vs. NCBI nr
Match: gi|703099647|ref|XP_010096705.1| (DNL-type zinc finger protein [Morus notabilis])

HSP 1 Score: 140.6 bits (353), Expect = 2.300e-30
Identity = 74/145 (51.03%), Postives = 104/145 (71.72%), Query Frame = 1


		  
Query: 11  SLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRHWLPSCCSGNA 70
           SL SS++  +   ++L+   SF PF+ S K  P + +S  +    K +R       SGN+
Sbjct: 24  SLSSSTADLHRPTNSLLSFNSFKPFS-SSKPQPTINLSRLILSHRKTKRGPKILVISGNS 83

Query: 71  EINPDTI-DDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERGTVFVQCAGC 130
           E  P++  +DS+ E++++++LPRRSLLVQFTC+ CGERT+RL+NRLAYERG ++VQCAGC
Sbjct: 84  ETCPESEPNDSNSEATVDIKLPRRSLLVQFTCDLCGERTQRLVNRLAYERGLIYVQCAGC 143

Query: 131 LKHHKLVDNLGLVVEYDFRNDTDQD 155
           L+HHKLVDNLGLVVEYD R + + D
Sbjct: 144 LQHHKLVDNLGLVVEYDLREEINAD 167

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BLAST of Spo24010.1 vs. UniProtKB/TrEMBL
Match: A0A0K9QGN6_SPIOL (Uncharacterized protein OS=Spinacia oleracea GN=SOVF_186200 PE=4 SV=1)

HSP 1 Score: 316.6 bits (810), Expect = 1.600e-83
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 1


		  
Query: 1   MTTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRH 60
           MTTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRH
Sbjct: 1   MTTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRH 60

Query: 61  WLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERG 120
           WLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERG
Sbjct: 61  WLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERG 120

Query: 121 TVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 155
           TVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD
Sbjct: 121 TVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 154

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BLAST of Spo24010.1 vs. UniProtKB/TrEMBL
Match: A0A0J8C3Q5_BETVU (Uncharacterized protein OS=Beta vulgaris subsp. vulgaris GN=BVRB_6g140960 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 1.800e-53
Identity = 114/156 (73.08%), Postives = 125/156 (80.13%), Query Frame = 1


		  
Query: 1   MTTTALPAIFSLLSSSSCYYPTKSTL-VLPPSFIP-FNFSPKSNPRLRISHKVAVSFKNQ 60
           MT T +PAIFSLLSSSS Y P  ST    P +F P  NF+PK NPRLRISHK       Q
Sbjct: 1   MTATVIPAIFSLLSSSS-YRPITSTFHKYPLNFHPSLNFTPKLNPRLRISHKA-----KQ 60

Query: 61  RHWLPSCCSGNAEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYE 120
            +W+PSCC GNA +N D  +DSSKE +IN QLPRRSLLVQFTC+ACGERTKRLINRLAYE
Sbjct: 61  YYWVPSCCGGNAGLNSDITNDSSKEPNINTQLPRRSLLVQFTCDACGERTKRLINRLAYE 120

Query: 121 RGTVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 155
           RGTVFVQCAGCL+HHKLVDNLGLVVEYDFRND D+D
Sbjct: 121 RGTVFVQCAGCLQHHKLVDNLGLVVEYDFRNDADED 150

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BLAST of Spo24010.1 vs. UniProtKB/TrEMBL
Match: W9R2L6_9ROSA (DNL-type zinc finger protein OS=Morus notabilis GN=L484_025823 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.600e-30
Identity = 74/145 (51.03%), Postives = 104/145 (71.72%), Query Frame = 1


		  
Query: 11  SLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRHWLPSCCSGNA 70
           SL SS++  +   ++L+   SF PF+ S K  P + +S  +    K +R       SGN+
Sbjct: 24  SLSSSTADLHRPTNSLLSFNSFKPFS-SSKPQPTINLSRLILSHRKTKRGPKILVISGNS 83

Query: 71  EINPDTI-DDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERGTVFVQCAGC 130
           E  P++  +DS+ E++++++LPRRSLLVQFTC+ CGERT+RL+NRLAYERG ++VQCAGC
Sbjct: 84  ETCPESEPNDSNSEATVDIKLPRRSLLVQFTCDLCGERTQRLVNRLAYERGLIYVQCAGC 143

Query: 131 LKHHKLVDNLGLVVEYDFRNDTDQD 155
           L+HHKLVDNLGLVVEYD R + + D
Sbjct: 144 LQHHKLVDNLGLVVEYDLREEINAD 167

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BLAST of Spo24010.1 vs. UniProtKB/TrEMBL
Match: D7T9D5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0011g02510 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.600e-30
Identity = 89/169 (52.66%), Postives = 106/169 (62.72%), Query Frame = 1


		  
Query: 2   TTTALPAIFSLLSSSSCYYPTKSTLVLPPSFIPFNFSPKSN-PRLRISHKVAVSFKNQRH 61
           T  ALP I SL SS      T +TL LP     F F PK+   RLR+S    V+ K    
Sbjct: 5   TCRALPTISSLHSSF-----TTTTLELPAPSTVF-FRPKTRFSRLRVSPTTTVAPKYGFR 64

Query: 62  WLPSCC--SGNAEINPD-------------TIDDSSKESSINVQLPRRSLLVQFTCNACG 121
            L +     GN+E N +               DDS  E+SI+++LPRRSL+VQFTC+ACG
Sbjct: 65  VLAASGFRDGNSEANLELGPSVSSSSHSNSVSDDSCSEASIDIKLPRRSLIVQFTCDACG 124

Query: 122 ERTKRLINRLAYERGTVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 155
           ERT+RLINRLA+ERGTVFVQCAGCL+HHKLVDNLGLVVEYD R +   D
Sbjct: 125 ERTERLINRLAFERGTVFVQCAGCLQHHKLVDNLGLVVEYDLRENISAD 167

[Close]

BLAST of Spo24010.1 vs. UniProtKB/TrEMBL
Match: B9HWP4_POPTR (Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0010s14240g PE=4 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 6.100e-30
Identity = 77/149 (51.68%), Postives = 97/149 (65.10%), Query Frame = 1


		  
Query: 11  SLLSSSSCYYPTKST-----LVLPPSFIPFNFSPKSNPRLRISHKVAVSFKNQRHW--LP 70
           S L + +C  P         L+ P S+ P +FS  +NPRLRISH  A+  K  R    + 
Sbjct: 12  SFLPTLTCMKPNPKRKPIYPLLFPNSYKPISFST-TNPRLRISHTEAILPKRSRGLFVVS 71

Query: 71  SCCSGNAEINPDTIDDSSKESS--INVQLPRRSLLVQFTCNACGERTKRLINRLAYERGT 130
               GN+E  P+   +   E S  I+++LPRRSLLVQFTCN CGER++RLINRLAYERG 
Sbjct: 72  GLVDGNSETYPEVESNDLNEESATIDIKLPRRSLLVQFTCNECGERSQRLINRLAYERGL 131

Query: 131 VFVQCAGCLKHHKLVDNLGLVVEYDFRND 151
           VFVQCAGC ++HKL DNLGL+VEYD R +
Sbjct: 132 VFVQCAGCERYHKLADNLGLIVEYDLREE 159

[Close]

BLAST of Spo24010.1 vs. ExPASy Swiss-Prot
Match: DNLZ_HUMAN (DNL-type zinc finger protein OS=Homo sapiens GN=DNLZ PE=1 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.800e-7
Identity = 21/42 (50.00%), Postives = 28/42 (66.67%), Query Frame = 1


		  
Query: 99  FTCNACGERTKRLINRLAYERGTVFVQCAGCLKHHKLVDNLG 141
           +TC  CG R+ + I++LAY +G V V C GC  HH + DNLG
Sbjct: 73  YTCKVCGTRSSKRISKLAYHQGVVIVTCPGCQNHHIIADNLG 114

[Close]

BLAST of Spo24010.1 vs. ExPASy Swiss-Prot
Match: DNLZ_XENLA (DNL-type zinc finger protein OS=Xenopus laevis GN=dnlz PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.700e-7
Identity = 20/55 (36.36%), Postives = 34/55 (61.82%), Query Frame = 1


		  
Query: 99  FTCNACGERTKRLINRLAYERGTVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQ 154
           +TC  C  R+ + I+++AY +G V V+C GC  HH + DNLG   + + R + ++
Sbjct: 86  YTCKVCATRSSKTISKVAYHKGVVIVRCPGCENHHIIADNLGWFSDLEGRRNIEE 140

[Close]

BLAST of Spo24010.1 vs. TAIR (Arabidopsis)
Match: AT1G68730.1 (Zim17-type zinc finger protein)

HSP 1 Score: 131.0 bits (328), Expect = 6.500e-31
Identity = 64/110 (58.18%), Postives = 86/110 (78.18%), Query Frame = 1


		  
Query: 46  RISHKVAVSFKNQRHWLPSCCSGNAEINPDT-IDDSSKESSINVQLPRRSLLVQFTCNAC 105
           R+   V    +N+   +    + ++++NPD   +DS++ +SI+++LPRRSL V+FTCN+C
Sbjct: 56  RVIEVVTPKQRNRSFSVFGSLADDSKLNPDEESNDSAEVASIDIKLPRRSLQVEFTCNSC 115

Query: 106 GERTKRLINRLAYERGTVFVQCAGCLKHHKLVDNLGLVVEYDFRNDTDQD 155
           GERTKRLINR AYE+G VFVQCAGCLKHHKLVDNLGL+VEYDFR +T +D
Sbjct: 116 GERTKRLINRHAYEKGLVFVQCAGCLKHHKLVDNLGLIVEYDFR-ETSKD 164

[Close]

BLAST of Spo24010.1 vs. TAIR (Arabidopsis)
Match: AT5G27280.1 (Zim17-type zinc finger protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.100e-14
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1


		  
Query: 70  AEINPDTIDDSSKESSINVQLPRRSLLVQFTCNACGERTKRLINRLAYERGTVFVQCAGC 129
           A+ + DT+  S+   S+  + PRR + V FTCN CG+RT R IN  AY  GTVFVQC GC
Sbjct: 98  AKTDTDTV--STFPWSLFTKSPRRRMRVAFTCNVCGQRTTRAINPHAYTDGTVFVQCCGC 157

Query: 130 LKHHKLVDNLGLVVEYDF 148
              HKLVDNL L  E  +
Sbjct: 158 NVFHKLVDNLNLFHEVKY 173

[Close]

BLAST of Spo24010.1 vs. TAIR (Arabidopsis)
Match: AT3G54826.1 (Zim17-type zinc finger protein)

HSP 1 Score: 49.7 bits (117), Expect = 1.900e-6
Identity = 19/50 (38.00%), Postives = 28/50 (56.00%), Query Frame = 1


		  
Query: 91  PRRSLLVQFTCNACGERTKRLINRLAYERGTVFVQCAGCLKHHKLVDNLG 141
           PR   ++ FTC  C  R+ ++ +R +YE G V V+C GC   H + D  G
Sbjct: 132 PRHDFMMVFTCKVCDTRSMKMASRESYENGVVVVRCGGCDNLHLIADRRG 181

The following BLAST results are available for this feature:

BLAST of Spo24010.1 vs. NCBI nr
BLAST of Spo24010.1 vs. UniProtKB/TrEMBL
BLAST of Spo24010.1 vs. ExPASy Swiss-Prot
BLAST of Spo24010.1 vs. TAIR (Arabidopsis)

BLAST of Spo24010.1 vs. NCBI nr
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. NCBI nr)
Total hits: 5


Match Name	E-value	Identity	Description
gi\|902155022\|gb\|KNA05863.1\|	2.4e-83	100.	hypothetical protein SOVF_1862...	[more]
gi\|731340402\|ref\|XP_010681378.1\|	2.5e-53	73.0	PREDICTED: DNL-type zinc finge...	[more]
gi\|731340404\|ref\|XP_010681379.1\|	1.1e-35	69.2	PREDICTED: uncharacterized pro...	[more]
gi\|743797737\|ref\|XP_011008859.1\|	1.8e-30	52.3	PREDICTED: mitochondrial prote...	[more]
gi\|703099647\|ref\|XP_010096705.1\|	2.3e-30	51.0	DNL-type zinc finger protein [...	[more]

BLAST of Spo24010.1 vs. UniProtKB/TrEMBL
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. UniprotKB/TrEMBL)
Total hits: 5


Match Name	E-value	Identity	Description
A0A0K9QGN6_SPIOL	1.6e-83	100.	Uncharacterized protein OS=Spi...	[more]
A0A0J8C3Q5_BETVU	1.8e-53	73.0	Uncharacterized protein OS=Bet...	[more]
W9R2L6_9ROSA	1.6e-30	51.0	DNL-type zinc finger protein O...	[more]
D7T9D5_VITVI	3.6e-30	52.6	Putative uncharacterized prote...	[more]
B9HWP4_POPTR	6.1e-30	51.6	Zinc finger family protein OS=...	[more]

BLAST of Spo24010.1 vs. ExPASy Swiss-Prot
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. ExPASy SwissProt)
Total hits: 2


Match Name	E-value	Identity	Description
DNLZ_HUMAN	2.8e-7	50.0	DNL-type zinc finger protein O...	[more]
DNLZ_XENLA	4.7e-7	36.3	DNL-type zinc finger protein O...	[more]

BLAST of Spo24010.1 vs. TAIR (Arabidopsis)
Analysis Date: 2018-06-29 (blastp Spinacia oleracea peptides vs. TAIR)
Total hits: 3


Match Name	E-value	Identity	Description
AT1G68730.1	6.5e-31	58.1	Zim17-type zinc finger protein	[more]
AT5G27280.1	1.1e-14	51.2	Zim17-type zinc finger protein	[more]
AT3G54826.1	1.9e-6	38.0	Zim17-type zinc finger protein	[more]

InterPro

Analysis Name: InterPro Annotations of S. oleracea
Date Performed: 2018-06-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007853	Zinc finger, DNL-type	PFAM	PF05180	zf-DNL	coord: 97..143 score: 1.0
IPR007853	Zinc finger, DNL-type	PROFILE	PS51501	ZF_DNL	coord: 90..154 score: 1
IPR024158	Mitochondrial import protein TIM15	PANTHER	PTHR20922	UNCHARACTERIZED	coord: 30..148 score: 5.0
None	No IPR available	PANTHER	PTHR20922:SF17	F24J5.3	coord: 30..148 score: 5.0

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0006457	protein folding
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009941	chloroplast envelope
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003756	protein disulfide isomerase activity
molecular_function	GO:0043621	protein self-association

RNA-Seq Expression

Co-expression


Gene	r value	Expression
Spo01252	0.70	Barchart \| Table
Spo25985	0.68	Barchart \| Table
Spo11688	0.67	Barchart \| Table